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1GBF - Gesellschaft für Biotechnologische Forschung, AG Mikrobielle ökologie, Mascheroder Weg 1, D-38124 Braunschweig, Germany
2Institut Mediterrani d'Estudis Avancats and Departament de Biologia Ambiental, Universitat de les Illes Balears (CSIC-UIB), Crtra. Valldemossa Km 7.5, 07071 Palma de Mallorca, Spain
Author for correspondence: Frank Ziemke. Tel: +49 8856 603876. Fax: +49 8856 602003. e-mail: frank_ziemke{at}bmg.boehringer-mannheim.com
ABSTRACT
The taxonomic relationship between several Shewanella putrefaciens isolates from the Baltic Sea and reference strains of this species is presented in this study. Results from DNA-DNA hybridization using a newly developed nonradioactive detection system and from 165 rRNA gene sequencing demonstrated that S. putrefaciens is a heterogeneous species containing more than a single genomic group. The genomic group II was phylogenetically, genotypically and phenotypically distant enough from the species type strain to be classified as a single species within the genus Shewanella. Therefore, we propose to reclassify Owen's genomic group II as Shewanella baltica sp. nov. with the type strain NCTC 10735.
Key Words: Shewanella putrefaciens • Shewanella baltica • DNA-DNA hybridization • 16S rRNA gene sequencing
The EMBL accession numbers for the sequences reported in this paper are AJ000213-AJ000216 and AJ001277-AJ001288.
Present address: Boehringer Mannheim GmbH, Mikro- und Zellbiologische Analytik IPK, TE-A3, Nonnenwald 2, D-82377 Penzberg, Germany.
Present address: Max-Planck-Institut für Marine Mikrobiologie, Celsiusstrasse 1, D-28359 Bremen, Germany.
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H. C. Scholz, Z. Hubalek, I. Sedlacek, G. Vergnaud, H. Tomaso, S. Al Dahouk, F. Melzer, P. Kampfer, H. Neubauer, A. Cloeckaert, et al. Brucella microti sp. nov., isolated from the common vole Microtus arvalis Int J Syst Evol Microbiol, February 1, 2008; 58(2): 375 - 382. [Abstract] [Full Text] [PDF]
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R. A. Albert, J. Archambault, M. Lempa, B. Hurst, C. Richardson, S. Gruenloh, M. Duran, H. L. Worliczek, B. E. Huber, R. Rossello-Mora, et al. Proposal of Viridibacillus gen. nov. and reclassification of Bacillus arvi, Bacillus arenosi and Bacillus neidei as Viridibacillus arvi gen. nov., comb. nov., Viridibacillus arenosi comb. nov. and Viridibacillus neidei comb. nov. Int J Syst Evol Microbiol, December 1, 2007; 57(12): 2729 - 2737. [Abstract] [Full Text] [PDF]
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C.-C. Young, P. Kampfer, M.-J. Ho, H.-J. Busse, B. E. Huber, A. B. Arun, F.-T. Shen, W.-A. Lai, and P. D. Rekha Arenimonas malthae sp. nov., a gammaproteobacterium isolated from an oil-contaminated site Int J Syst Evol Microbiol, December 1, 2007; 57(12): 2790 - 2793. [Abstract] [Full Text] [PDF]
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P. Kampfer, H. C. Scholz, B. Huber, E. Falsen, and H.-J. Busse Ochrobactrum haematophilum sp. nov. and Ochrobactrum pseudogrignonense sp. nov., isolated from human clinical specimens Int J Syst Evol Microbiol, November 1, 2007; 57(11): 2513 - 2518. [Abstract] [Full Text] [PDF]
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M. Vaneechoutte, P. Kampfer, T. De Baere, V. Avesani, M. Janssens, and G. Wauters Chryseobacterium hominis sp. nov., to accommodate clinical isolates biochemically similar to CDC groups II-h and II-c Int J Syst Evol Microbiol, November 1, 2007; 57(11): 2623 - 2628. [Abstract] [Full Text] [PDF]
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M. Gomila, B. Bowien, E. Falsen, E. R. B. Moore, and J. Lalucat Description of Pelomonas aquatica sp. nov. and Pelomonas puraquae sp. nov., isolated from industrial and haemodialysis water Int J Syst Evol Microbiol, November 1, 2007; 57(11): 2629 - 2635. [Abstract] [Full Text] [PDF]
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 P. Kampfer, D. M. Citron, E. J. C. Goldstein, and H. C. Scholz Difficulty in the identification and differentiation of clinically relevant Ochrobactrum species J. Med. Microbiol., November 1, 2007; 56(11): 1571 - 1573. [Full Text] [PDF]
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R. J. Murray, M. Aravena-Roman, and P. Kampfer Endophthalmitis due to Williamsia muralis J. Med. Microbiol., October 1, 2007; 56(10): 1410 - 1412. [Abstract] [Full Text] [PDF]
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P. Kampfer, R. Rossello-Mora, M. Hermansson, F. Persson, B. Huber, E. Falsen, and H.-J. Busse Undibacterium pigrum gen. nov., sp. nov., isolated from drinking water Int J Syst Evol Microbiol, July 1, 2007; 57(7): 1510 - 1515. [Abstract] [Full Text] [PDF]
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P. Kampfer, B. Huber, S. Buczolits, K. Thummes, I. Grun-Wollny, and H.-J. Busse Nocardia acidivorans sp. nov., isolated from soil of the island of Stromboli Int J Syst Evol Microbiol, June 1, 2007; 57(6): 1183 - 1187. [Abstract] [Full Text] [PDF]
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M. Aguilera, A. Cabrera, C. Incerti, S. Fuentes, N. J. Russell, A. Ramos-Cormenzana, and M. Monteoliva-Sanchez Chromohalobacter salarius sp. nov., a moderately halophilic bacterium isolated from a solar saltern in Cabo de Gata, Almeria, southern Spain Int J Syst Evol Microbiol, June 1, 2007; 57(6): 1238 - 1242. [Abstract] [Full Text] [PDF]
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P. Kampfer, U. Meurer, M. Esser, T. Hirsch, and H.-J. Busse Sphingomonas pseudosanguinis sp. nov., isolated from the water reservoir of an air humidifier Int J Syst Evol Microbiol, June 1, 2007; 57(6): 1342 - 1345. [Abstract] [Full Text] [PDF]
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T. Quesada, M. Aguilera, J. A. Morillo, A. Ramos-Cormenzana, and M. Monteoliva-Sanchez Virgibacillus olivae sp. nov., isolated from waste wash-water from processing of Spanish-style green olives Int J Syst Evol Microbiol, May 1, 2007; 57(5): 906 - 910. [Abstract] [Full Text] [PDF]
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P. Kampfer, B. Huber, K. Thummes, I. Grun-Wollny, and H.-J. Busse Actinoplanes couchii sp. nov. Int J Syst Evol Microbiol, April 1, 2007; 57(4): 721 - 724. [Abstract] [Full Text] [PDF]
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P. Kampfer, H. Scholz, B. Huber, K. Thummes, H.-J. Busse, E. W. Maas, and E. Falsen Description of Pseudochrobactrum kiredjianiae sp. nov. Int J Syst Evol Microbiol, April 1, 2007; 57(4): 755 - 760. [Abstract] [Full Text] [PDF]
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M. Satomi, B. F. Vogel, K. Venkateswaran, and L. Gram Description of Shewanella glacialipiscicola sp. nov. and Shewanella algidipiscicola sp. nov., isolated from marine fish of the Danish Baltic Sea, and proposal that Shewanella affinis is a later heterotypic synonym of Shewanella colwelliana Int J Syst Evol Microbiol, February 1, 2007; 57(2): 347 - 352. [Abstract] [Full Text] [PDF]
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A. Cabrera, M. Aguilera, S. Fuentes, C. Incerti, N. J. Russell, A. Ramos-Cormenzana, and M. Monteoliva-Sanchez Halomonas indalinina sp. nov., a moderately halophilic bacterium isolated from a solar saltern in Cabo de Gata, Almeria, southern Spain Int J Syst Evol Microbiol, February 1, 2007; 57(2): 376 - 380. [Abstract] [Full Text] [PDF]
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B. Geueke, H.-J. Busse, T. Fleischmann, P. Kampfer, and H.-P. E. Kohler Description of Sphingosinicella xenopeptidilytica sp. nov., a beta-peptide-degrading species, and emended descriptions of the genus Sphingosinicella and the species Sphingosinicella microcystinivorans Int J Syst Evol Microbiol, January 1, 2007; 57(1): 107 - 113. [Abstract] [Full Text] [PDF]
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V. Jurado, J. M. Gonzalez, L. Laiz, and C. Saiz-Jimenez Aurantimonas altamirensis sp. nov., a member of the order Rhizobiales isolated from Altamira Cave. Int J Syst Evol Microbiol, November 1, 2006; 56(Pt 11): 2583 - 2585. [Abstract] [Full Text] [PDF]
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K. Kharroub, M. Aguilera, T. Quesada, J. A. Morillo, A. Ramos-Cormenzana, A. Boulharouf, and M. Monteoliva-Sanchez Salicola salis sp. nov., an extremely halophilic bacterium isolated from Ezzemoul sabkha in Algeria. Int J Syst Evol Microbiol, November 1, 2006; 56(Pt 11): 2647 - 2652. [Abstract] [Full Text] [PDF]
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P. Kampfer, V. Avesani, M. Janssens, J. Charlier, T. De Baere, and M. Vaneechoutte Description of Wautersiella falsenii gen. nov., sp. nov., to accommodate clinical isolates phenotypically resembling members of the genera Chryseobacterium and Empedobacter. Int J Syst Evol Microbiol, October 1, 2006; 56(Pt 10): 2323 - 2329. [Abstract] [Full Text] [PDF]
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P. Kampfer, R. Rossello-Mora, H. C. Scholz, C. Welinder-Olsson, E. Falsen, and H.-J. Busse Description of Pseudochrobactrum gen. nov., with the two species Pseudochrobactrum asaccharolyticum sp. nov. and Pseudochrobactrum saccharolyticum sp. nov. Int J Syst Evol Microbiol, August 1, 2006; 56(Pt 8): 1823 - 1829. [Abstract] [Full Text] [PDF]
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H. Gao, A. Obraztova, N. Stewart, R. Popa, J. K. Fredrickson, J. M. Tiedje, K. H. Nealson, and J. Zhou Shewanella loihica sp. nov., isolated from iron-rich microbial mats in the Pacific Ocean. Int J Syst Evol Microbiol, August 1, 2006; 56(Pt 8): 1911 - 1916. [Abstract] [Full Text] [PDF]
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P. Kampfer, U. Kohlweyer, B. Thiemer, and J. R. Andreesen Pseudonocardia tetrahydrofuranoxydans sp. nov. Int J Syst Evol Microbiol, July 1, 2006; 56(Pt 7): 1535 - 1538. [Abstract] [Full Text] [PDF]
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K. Kharroub, T. Quesada, R. Ferrer, S. Fuentes, M. Aguilera, A. Boulahrouf, A. Ramos-Cormenzana, and M. Monteoliva-Sanchez Halorubrum ezzemoulense sp. nov., a halophilic archaeon isolated from Ezzemoul sabkha, Algeria. Int J Syst Evol Microbiol, July 1, 2006; 56(Pt 7): 1583 - 1588. [Abstract] [Full Text] [PDF]
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A. K. Tripathi, S. C. Verma, S. P. Chowdhury, M. Lebuhn, A. Gattinger, and M. Schloter Ochrobactrum oryzae sp. nov., an endophytic bacterial species isolated from deep-water rice in India. Int J Syst Evol Microbiol, July 1, 2006; 56(Pt 7): 1677 - 1680. [Abstract] [Full Text] [PDF]
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L. Maturrano, M. Valens-Vadell, R. Rossello-Mora, and J. Anton Salicola marasensis gen. nov., sp. nov., an extremely halophilic bacterium isolated from the Maras solar salterns in Peru. Int J Syst Evol Microbiol, July 1, 2006; 56(Pt 7): 1685 - 1691. [Abstract] [Full Text] [PDF]
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 J. Lalucat, A. Bennasar, R. Bosch, E. Garcia-Valdes, and N. J. Palleroni Biology of Pseudomonas stutzeri Microbiol. Mol. Biol. Rev., June 1, 2006; 70(2): 510 - 547. [Abstract] [Full Text] [PDF]
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A. J. Auman, J. L. Breezee, J. J. Gosink, P. Kampfer, and J. T. Staley Psychromonas ingrahamii sp. nov., a novel gas vacuolate, psychrophilic bacterium isolated from Arctic polar sea ice. Int J Syst Evol Microbiol, May 1, 2006; 56(Pt 5): 1001 - 1007. [Abstract] [Full Text] [PDF]
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W.-A. Lai, P. Kampfer, A. B. Arun, F.-T. Shen, B. Huber, P. D. Rekha, and C.-C. Young Deinococcus ficus sp. nov., isolated from the rhizosphere of Ficus religiosa L. Int J Syst Evol Microbiol, April 1, 2006; 56(Pt 4): 787 - 791. [Abstract] [Full Text] [PDF]
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P. Kampfer, K. Denger, A. M. Cook, S.-T. Lee, U. Jackel, E. B. M. Denner, and H.-J. Busse Castellaniella gen. nov., to accommodate the phylogenetic lineage of Alcaligenes defragrans, and proposal of Castellaniella defragrans gen. nov., comb. nov. and Castellaniella denitrificans sp. nov. Int J Syst Evol Microbiol, April 1, 2006; 56(Pt 4): 815 - 819. [Abstract] [Full Text] [PDF]
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A. Lehnen, H.-J. Busse, K. Frolich, M. Krasinska, P. Kampfer, and S. Speck Arcanobacterium bialowiezense sp. nov. and Arcanobacterium bonasi sp. nov., isolated from the prepuce of European bison bulls (Bison bonasus) suffering from balanoposthitis, and emended description of the genus Arcanobacterium Collins et al. 1983. Int J Syst Evol Microbiol, April 1, 2006; 56(Pt 4): 861 - 866. [Abstract] [Full Text] [PDF]
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A. M. Rodas, E. Chenoll, M. C. Macian, S. Ferrer, I. Pardo, and R. Aznar Lactobacillus vini sp. nov., a wine lactic acid bacterium homofermentative for pentoses. Int J Syst Evol Microbiol, March 1, 2006; 56(Pt 3): 513 - 517. [Abstract] [Full Text] [PDF]
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P. Kampfer, H.-J. Busse, and E. Falsen Polaromonas aquatica sp. nov., isolated from tap water. Int J Syst Evol Microbiol, March 1, 2006; 56(Pt 3): 605 - 608. [Abstract] [Full Text] [PDF]
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B. Prado, C. Lizama, M. Aguilera, A. Ramos-Cormenzana, S. Fuentes, V. Campos, and M. Monteoliva-Sanchez Chromohalobacter nigrandesensis sp. nov., a moderately halophilic, Gram-negative bacterium isolated from Lake Tebenquiche on the Atacama Saltern, Chile. Int J Syst Evol Microbiol, March 1, 2006; 56(Pt 3): 647 - 651. [Abstract] [Full Text] [PDF]
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P. Kampfer, O. Terenius, J. M. Lindh, and I. Faye Janibacter anophelis sp. nov., isolated from the midgut of Anopheles arabiensis Int J Syst Evol Microbiol, February 1, 2006; 56(2): 389 - 392. [Abstract] [Full Text] [PDF]
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E. Chenoll, M. C. Macian, and R. Aznar Lactobacillus rennini sp. nov., isolated from rennin and associated with cheese spoilage Int J Syst Evol Microbiol, February 1, 2006; 56(2): 449 - 452. [Abstract] [Full Text] [PDF]
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M. Satomi, B. F. Vogel, L. Gram, and K. Venkateswaran Shewanella hafniensis sp. nov. and Shewanella morhuae sp. nov., isolated from marine fish of the Baltic Sea Int J Syst Evol Microbiol, January 1, 2006; 56(1): 243 - 249. [Abstract] [Full Text] [PDF]
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D. R. Arahal, M. C. Macian, E. Garay, and M. J. Pujalte Thalassobius mediterraneus gen. nov., sp. nov., and reclassification of Ruegeria gelatinovorans as Thalassobius gelatinovorus comb. nov. Int J Syst Evol Microbiol, November 1, 2005; 55(6): 2371 - 2376. [Abstract] [Full Text] [PDF]
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F. Martinez-Checa, E. Quesada, M. J. Martinez-Canovas, I. Llamas, and V. Bejar Palleronia marisminoris gen. nov., sp. nov., a moderately halophilic, exopolysaccharide-producing bacterium belonging to the 'Alphaproteobacteria', isolated from a saline soil Int J Syst Evol Microbiol, November 1, 2005; 55(6): 2525 - 2530. [Abstract] [Full Text] [PDF]
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H.-J. Busse, E. Hauser, and P. Kampfer Description of two novel species, Sphingomonas abaci sp. nov. and Sphingomonas panni sp. nov. Int J Syst Evol Microbiol, November 1, 2005; 55(6): 2565 - 2569. [Abstract] [Full Text] [PDF]
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B. F. Vogel, K. Venkateswaran, M. Satomi, and L. Gram Identification of Shewanella baltica as the Most Important H2S-Producing Species during Iced Storage of Danish Marine Fish Appl. Envir. Microbiol., November 1, 2005; 71(11): 6689 - 6697. [Abstract] [Full Text] [PDF]
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J. Sikorski, J. Lalucat, and W. Wackernagel Genomovars 11 to 18 of Pseudomonas stutzeri, identified among isolates from soil and marine sediment Int J Syst Evol Microbiol, September 1, 2005; 55(5): 1767 - 1770. [Abstract] [Full Text] [PDF]
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V. Jurado, I. Groth, J. M. Gonzalez, L. Laiz, and C. Saiz-Jimenez Agromyces subbeticus sp. nov., isolated from a cave in southern Spain Int J Syst Evol Microbiol, September 1, 2005; 55(5): 1897 - 1901. [Abstract] [Full Text] [PDF]
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M. J. Pujalte, M. C. Macian, D. R. Arahal, and E. Garay Thalassobacter stenotrophicus Macian et al. 2005 is a later synonym of Jannaschia cystaugens Adachi et al. 2004, with emended description of the genus Thalassobacter Int J Syst Evol Microbiol, September 1, 2005; 55(5): 1959 - 1963. [Abstract] [Full Text] [PDF]
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F. Martinez-Checa, V. Bejar, M. J. Martinez-Canovas, I. Llamas, and E. Quesada Halomonas almeriensis sp. nov., a moderately halophilic, exopolysaccharide-producing bacterium from Cabo de Gata, Almeria, south-east Spain Int J Syst Evol Microbiol, September 1, 2005; 55(5): 2007 - 2011. [Abstract] [Full Text] [PDF]
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R. A. Albert, J. Archambault, R. Rossello-Mora, B. J. Tindall, and M. Matheny Bacillus acidicola sp. nov., a novel mesophilic, acidophilic species isolated from acidic Sphagnum peat bogs in Wisconsin Int J Syst Evol Microbiol, September 1, 2005; 55(5): 2125 - 2130. [Abstract] [Full Text] [PDF]
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 P. Kampfer, S. Engelhart, M. Rolke, and J. Sennekamp Extrinsic Allergic Alveolitis (Hypersensitivity Pneumonitis) Caused by Sphingobacterium spiritivorum from the Water Reservoir of a Steam Iron J. Clin. Microbiol., September 1, 2005; 43(9): 4908 - 4910. [Abstract] [Full Text] [PDF]
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V. Jurado, L. Laiz, J. M. Gonzalez, M. Hernandez-Marine, M. Valens, and C. Saiz-Jimenez Phyllobacterium catacumbae sp. nov., a member of the order 'Rhizobiales' isolated from Roman catacombs Int J Syst Evol Microbiol, July 1, 2005; 55(4): 1487 - 1490. [Abstract] [Full Text] [PDF]
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J.-S. Zhao, D. Manno, C. Beaulieu, L. Paquet, and J. Hawari Shewanella sediminis sp. nov., a novel Na+-requiring and hexahydro-1,3,5-trinitro-1,3,5-triazine-degrading bacterium from marine sediment Int J Syst Evol Microbiol, July 1, 2005; 55(4): 1511 - 1520. [Abstract] [Full Text] [PDF]
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C. Ruiz-Garcia, E. Quesada, F. Martinez-Checa, I. Llamas, M. C. Urdaci, and V. Bejar Bacillus axarquiensis sp. nov. and Bacillus malacitensis sp. nov., isolated from river-mouth sediments in southern Spain Int J Syst Evol Microbiol, May 1, 2005; 55(3): 1279 - 1285. [Abstract] [Full Text] [PDF]
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F.-T. Shen, P. Kampfer, C.-C. Young, W.-A. Lai, and A. B. Arun Chryseobacterium taichungense sp. nov., isolated from contaminated soil Int J Syst Evol Microbiol, May 1, 2005; 55(3): 1301 - 1304. [Abstract] [Full Text] [PDF]
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M. C. Macian, D. R. Arahal, E. Garay, W. Ludwig, K. H. Schleifer, and M. J. Pujalte Jannaschia rubra sp. nov., a red-pigmented bacterium isolated from sea water Int J Syst Evol Microbiol, March 1, 2005; 55(2): 649 - 653. [Abstract] [Full Text] [PDF]
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P. Kampfer, R. M. Kroppenstedt, and I. Grun-Wollny Nonomuraea kuesteri sp. nov. Int J Syst Evol Microbiol, March 1, 2005; 55(2): 847 - 851. [Abstract] [Full Text] [PDF]
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C. Ruiz-Garcia, V. Bejar, F. Martinez-Checa, I. Llamas, and E. Quesada Bacillus velezensis sp. nov., a surfactant-producing bacterium isolated from the river Velez in Malaga, southern Spain Int J Syst Evol Microbiol, January 1, 2005; 55(1): 191 - 195. [Abstract] [Full Text] [PDF]
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P. Kampfer, R. Schulze, U. Jackel, K. A. Malik, R. Amann, and S. Spring Hydrogenophaga defluvii sp. nov. and Hydrogenophaga atypica sp. nov., isolated from activated sludge Int J Syst Evol Microbiol, January 1, 2005; 55(1): 341 - 344. [Abstract] [Full Text] [PDF]
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M. Xu, J. Guo, Y. Cen, X. Zhong, W. Cao, and G. Sun Shewanella decolorationis sp. nov., a dye-decolorizing bacterium isolated from activated sludge of a waste-water treatment plant Int J Syst Evol Microbiol, January 1, 2005; 55(1): 363 - 368. [Abstract] [Full Text] [PDF]
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C.-C. Young, P. Kampfer, F.-T. Shen, W.-A. Lai, and A. B. Arun Chryseobacterium formosense sp. nov., isolated from the rhizosphere of Lactuca sativa L. (garden lettuce) Int J Syst Evol Microbiol, January 1, 2005; 55(1): 423 - 426. [Abstract] [Full Text] [PDF]
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L. Toffin, A. Bidault, P. Pignet, B. J. Tindall, A. Slobodkin, C. Kato, and D. Prieur Shewanella profunda sp. nov., isolated from deep marine sediment of the Nankai Trough Int J Syst Evol Microbiol, November 1, 2004; 54(6): 1943 - 1949. [Abstract] [Full Text] [PDF]
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X. Li, D. Zhang, F. Chen, J. Ma, Y. Dong, and L. Zhang Klebsiella singaporensis sp. nov., a novel isomaltulose-producing bacterium Int J Syst Evol Microbiol, November 1, 2004; 54(6): 2131 - 2136. [Abstract] [Full Text] [PDF]
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D. Schleheck, B. J. Tindall, R. Rossello-Mora, and A. M. Cook Parvibaculum lavamentivorans gen. nov., sp. nov., a novel heterotroph that initiates catabolism of linear alkylbenzenesulfonate Int J Syst Evol Microbiol, September 1, 2004; 54(5): 1489 - 1497. [Abstract] [Full Text] [PDF]
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E. Hauser, P. Kampfer, and H.-J. Busse Pseudomonas psychrotolerans sp. nov. Int J Syst Evol Microbiol, September 1, 2004; 54(5): 1633 - 1637. [Abstract] [Full Text] [PDF]
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