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Int J Syst Bacteriol 46 (1996), 234-239; DOI 10.1099/00207713-46-1-234
© 1996 Society for General Microbiology
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Agrococcus jenensis gen. nov., sp. nov., a New Genus of Actinomycetes with Diaminobutyric Acid in the Cell Wall

INGRID GROTH1,*, P. SCHUMANN2, N. WEISS3, KARIN MARTIN1 and F. A. RAINEY3

1 Hans-Knöll-Institut für Naturstoff-Forschung e. V., Germany
2 DSM-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Aussenstelle Jena, Germany
3 D-07745 Jena, and DSM-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, D-38124 Braunschweig, Germany

* Corresponding author. Mailing address: Hans-Knöll-Institut für Naturstoff-Forschung, Beutenbergstrasse 11, D-07745 Jena, Germany. Phone: 049-3641-656666. Fax: 049-3641-656600. Electronic mail address: igroth{at}leutra.imb-jena.de.

ABSTRACT

Two strains of a new gram-positive coryneform bacterium isolated from soil and from a sandstone surface are described. Strain 2002-39/1T (T = type strain) is a coccoid, nonmotile, non-acid-fast, microaerophilic organism. The menaquinones of this strain are MK-12 and MK-11, and the main components of the whole-cell sugars are glucose and rhamnose. No mycolic acids are present. The G+C content of the DNA is 74 mol%. Comparative 16S ribosomal DNA studies and a cell wall analysis revealed that this strain represents a new genus belonging to the group of actinomycetes that have diaminobutyric acid in their peptidoglycans. The second strain, strain ST54, which was isolated from a sandstone surface, had the same characteristic features as strain 2002-39/1T. The name Agrococcus jenensis gen. nov., sp. nov., is proposed for these organisms. The type strain is strain 2002-39/1, which has been deposited in the German Collection of Microorganisms and Cell Cultures as strain DSM 9580.




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B.-Y. Kim, S.-H. Yoo, H.-Y. Weon, Y.-A. Jeon, S.-B. Hong, S.-J. Go, E. Stackebrandt, and S.-W. Kwon
Jannaschia pohangensis sp. nov., isolated from seashore sand in Korea
Int J Syst Evol Microbiol, February 1, 2008; 58(2): 496 - 499.
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E. M. Toth, Z. Keki, Z. G. Homonnay, A. K. Borsodi, K. Marialigeti, and P. Schumann
Nocardioides daphniae sp. nov., isolated from Daphnia cucullata (Crustacea: Cladocera)
Int J Syst Evol Microbiol, January 1, 2008; 58(1): 78 - 83.
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Int. J. Syst. Evol. Microbiol.Home page
H.-Y. Weon, B.-Y. Kim, S.-H. Yoo, S.-W. Kwon, S.-J. Go, and E. Stackebrandt
Uliginosibacterium gangwonense gen. nov., sp. nov., isolated from a wetland, Yongneup, in Korea
Int J Syst Evol Microbiol, January 1, 2008; 58(1): 131 - 135.
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Int. J. Syst. Evol. Microbiol.Home page
M. A. Amoozegar, P. Schumann, M. Hajighasemi, M. Ashengroph, and M. R. Razavi
Salinicoccus iranensis sp. nov., a novel moderate halophile
Int J Syst Evol Microbiol, January 1, 2008; 58(1): 178 - 183.
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Int. J. Syst. Evol. Microbiol.Home page
S.-W. Kwon, B.-Y. Kim, W.-G. Kim, K.-H. Yoo, S.-H. Yoo, J.-A Son, and H.-Y. Weon
Paludibacterium yongneupense gen. nov., sp. nov., isolated from a wetland, Yongneup, in Korea
Int J Syst Evol Microbiol, January 1, 2008; 58(1): 190 - 194.
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Int. J. Syst. Evol. Microbiol.Home page
R. A. Albert, J. Archambault, M. Lempa, B. Hurst, C. Richardson, S. Gruenloh, M. Duran, H. L. Worliczek, B. E. Huber, R. Rossello-Mora, et al.
Proposal of Viridibacillus gen. nov. and reclassification of Bacillus arvi, Bacillus arenosi and Bacillus neidei as Viridibacillus arvi gen. nov., comb. nov., Viridibacillus arenosi comb. nov. and Viridibacillus neidei comb. nov.
Int J Syst Evol Microbiol, December 1, 2007; 57(12): 2729 - 2737.
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Int. J. Syst. Evol. Microbiol.Home page
Y.-G. Chen, X.-L. Cui, R. Pukall, H.-M. Li, Y.-L. Yang, L.-H. Xu, M.-L. Wen, Q. Peng, and C.-L. Jiang
Salinicoccus kunmingensis sp. nov., a moderately halophilic bacterium isolated from a salt mine in Yunnan, south-west China
Int J Syst Evol Microbiol, October 1, 2007; 57(10): 2327 - 2332.
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Int. J. Syst. Evol. Microbiol.Home page
M. R. Carlsohn, I. Groth, C. Sproer, B. Schutze, H.-P. Saluz, T. Munder, and E. Stackebrandt
Kribbella aluminosa sp. nov., isolated from a medieval alum slate mine
Int J Syst Evol Microbiol, September 1, 2007; 57(9): 1943 - 1947.
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Int. J. Syst. Evol. Microbiol.Home page
H.-Y. Weon, B.-Y. Kim, P. Schumann, J.-A Son, J. Jang, S.-J. Go, and S.-W. Kwon
Deinococcus cellulosilyticus sp. nov., isolated from air
Int J Syst Evol Microbiol, August 1, 2007; 57(8): 1685 - 1688.
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Int. J. Syst. Evol. Microbiol.Home page
S.-W. Kwon, B.-Y. Kim, J. Song, H.-Y. Weon, P. Schumann, B. J. Tindall, E. Stackebrandt, and D. Fritze
Sporosarcina koreensis sp. nov. and Sporosarcina soli sp. nov., isolated from soil in Korea
Int J Syst Evol Microbiol, August 1, 2007; 57(8): 1694 - 1698.
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Int. J. Syst. Evol. Microbiol.Home page
H.-Y. Weon, B.-Y. Kim, S.-H. Yoo, J.-H. Joa, K. H. Lee, Y.-S. Zhang, S.-W. Kwon, and B.-S. Koo
Aurantimonas ureilytica sp. nov., isolated from an air sample
Int J Syst Evol Microbiol, August 1, 2007; 57(8): 1717 - 1720.
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Int. J. Syst. Evol. Microbiol.Home page
S.-W. Kwon, S.-Y. Lee, B.-Y. Kim, H.-Y. Weon, J.-B. Kim, S.-J. Go, and G.-B. Lee
Bacillus niabensis sp. nov., isolated from cotton-waste composts for mushroom cultivation
Int J Syst Evol Microbiol, August 1, 2007; 57(8): 1909 - 1913.
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Int. J. Syst. Evol. Microbiol.Home page
H.-Y. Weon, B.-Y. Kim, S.-B. Hong, J.-H. Joa, S.-S. Nam, K. H. Lee, and S.-W. Kwon
Skermanella aerolata sp. nov., isolated from air, and emended description of the genus Skermanella
Int J Syst Evol Microbiol, July 1, 2007; 57(7): 1539 - 1542.
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Int. J. Syst. Evol. Microbiol.Home page
H.-Y. Weon, B.-Y. Kim, S.-H. Yoo, J.-H. Joa, S.-W. Kwon, and W.-G. Kim
Andreprevotia chitinilytica gen. nov., sp. nov., isolated from forest soil from Halla Mountain, Jeju Island, Korea
Int J Syst Evol Microbiol, July 1, 2007; 57(7): 1572 - 1575.
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Int. J. Syst. Evol. Microbiol.Home page
H.-Y. Weon, M.-H. Song, J.-A Son, B.-Y. Kim, S.-W. Kwon, S.-J. Go, and E. Stackebrandt
Flavobacterium terrae sp. nov. and Flavobacterium cucumis sp. nov., isolated from greenhouse soil
Int J Syst Evol Microbiol, July 1, 2007; 57(7): 1594 - 1598.
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Int. J. Syst. Evol. Microbiol.Home page
M. R. Carlsohn, I. Groth, G. Y. A. Tan, B. Schutze, H.-P. Saluz, T. Munder, J. Yang, J. Wink, and M. Goodfellow
Amycolatopsis saalfeldensis sp. nov., a novel actinomycete isolated from a medieval alum slate mine
Int J Syst Evol Microbiol, July 1, 2007; 57(7): 1640 - 1646.
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Int. J. Syst. Evol. Microbiol.Home page
S.-W. Kwon, B.-Y. Kim, H.-Y. Weon, Y.-K. Baek, and S.-J. Go
Arenimonas donghaensis gen. nov., sp. nov., isolated from seashore sand
Int J Syst Evol Microbiol, May 1, 2007; 57(5): 954 - 958.
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Int. J. Syst. Evol. Microbiol.Home page
A. H. Kaksonen, S. Spring, P. Schumann, R. M. Kroppenstedt, and J. A. Puhakka
Desulfurispora thermophila gen. nov., sp. nov., a thermophilic, spore-forming sulfate-reducer isolated from a sulfidogenic fluidized-bed reactor
Int J Syst Evol Microbiol, May 1, 2007; 57(5): 1089 - 1094.
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Int. J. Syst. Evol. Microbiol.Home page
I. Ahmed, A. Yokota, A. Yamazoe, and T. Fujiwara
Proposal of Lysinibacillus boronitolerans gen. nov. sp. nov., and transfer of Bacillus fusiformis to Lysinibacillus fusiformis comb. nov. and Bacillus sphaericus to Lysinibacillus sphaericus comb. nov.
Int J Syst Evol Microbiol, May 1, 2007; 57(5): 1117 - 1125.
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Int. J. Syst. Evol. Microbiol.Home page
V. S. Somvanshi, E. Lang, P. Schumann, R. Pukall, R. M. Kroppenstedt, S. Ganguly, and E. Stackebrandt
Leucobacter iarius sp. nov., in the family Microbacteriaceae
Int J Syst Evol Microbiol, April 1, 2007; 57(4): 682 - 686.
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Int. J. Syst. Evol. Microbiol.Home page
I. Ahmed, A. Yokota, and T. Fujiwara
Gracilibacillus boraciitolerans sp. nov., a highly boron-tolerant and moderately halotolerant bacterium isolated from soil
Int J Syst Evol Microbiol, April 1, 2007; 57(4): 796 - 802.
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Int. J. Syst. Evol. Microbiol.Home page
S.-W. Kwon, B.-Y. Kim, K.-H. Lee, K.-Y. Jang, S.-J. Seok, J.-S. Kwon, W.-G. Kim, and H.-Y. Weon
Pedobacter suwonensis sp. nov., isolated from the rhizosphere of Chinese cabbage (Brassica campestris)
Int J Syst Evol Microbiol, March 1, 2007; 57(3): 480 - 484.
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Int. J. Syst. Evol. Microbiol.Home page
S. Yuan, P. Ren, J. Liu, Y. Xue, Y. Ma, and P. Zhou
Lentibacillus halodurans sp. nov., a moderately halophilic bacterium isolated from a salt lake in Xin-Jiang, China
Int J Syst Evol Microbiol, March 1, 2007; 57(3): 485 - 488.
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Int. J. Syst. Evol. Microbiol.Home page
B.-Y. Kim, H.-Y. Weon, S.-H. Yoo, S.-B. Hong, S.-W. Kwon, E. Stackebrandt, and S.-J. Go
Niabella aurantiaca gen. nov., sp. nov., isolated from a greenhouse soil in Korea
Int J Syst Evol Microbiol, March 1, 2007; 57(3): 538 - 541.
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Int. J. Syst. Evol. Microbiol.Home page
H.-Y. Weon, B.-Y. Kim, M.-K. Kim, S.-H. Yoo, S.-W. Kwon, S.-J. Go, and E. Stackebrandt
Lysobacter niabensis sp. nov. and Lysobacter niastensis sp. nov., isolated from greenhouse soils in Korea
Int J Syst Evol Microbiol, March 1, 2007; 57(3): 548 - 551.
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Int. J. Syst. Evol. Microbiol.Home page
S.-Y. Jung, S.-Y. Lee, T.-K. Oh, and J.-H. Yoon
Agromyces allii sp. nov., isolated from the rhizosphere of Allium victorialis var. platyphyllum
Int J Syst Evol Microbiol, March 1, 2007; 57(3): 588 - 593.
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Int. J. Syst. Evol. Microbiol.Home page
S.-H. Yoo, H.-Y. Weon, B.-Y. Kim, J.-H. Kim, Y.-K. Baek, S.-W. Kwon, S.-J. Go, and E. Stackebrandt
Pseudoxanthomonas yeongjuensis sp. nov., isolated from soil cultivated with Korean ginseng
Int J Syst Evol Microbiol, March 1, 2007; 57(3): 646 - 649.
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Int. J. Syst. Evol. Microbiol.Home page
S. Crapart, M.-L. Fardeau, J.-L. Cayol, P. Thomas, C. Sery, B. Ollivier, and Y. Combet-Blanc
Exiguobacterium profundum sp. nov., a moderately thermophilic, lactic acid-producing bacterium isolated from a deep-sea hydrothermal vent
Int J Syst Evol Microbiol, February 1, 2007; 57(2): 287 - 292.
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Int. J. Syst. Evol. Microbiol.Home page
N. Bora, M. Vancanneyt, R. Gelsomino, J. Swings, N. Brennan, T. M. Cogan, S. Larpin, N. Desmasures, F. E. Lechner, R. M. Kroppenstedt, et al.
Agrococcus casei sp. nov., isolated from the surfaces of smear-ripened cheeses
Int J Syst Evol Microbiol, January 1, 2007; 57(1): 92 - 97.
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Int. J. Syst. Evol. Microbiol.Home page
A. H. Kaksonen, S. Spring, P. Schumann, R. M. Kroppenstedt, and J. A. Puhakka
Desulfovirgula thermocuniculi gen. nov., sp. nov., a thermophilic sulfate-reducer isolated from a geothermal underground mine in Japan
Int J Syst Evol Microbiol, January 1, 2007; 57(1): 98 - 102.
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Int. J. Syst. Evol. Microbiol.Home page
H. Yi, P. Schumann, and J. Chun
Demequina aestuarii gen. nov., sp. nov., a novel actinomycete of the suborder Micrococcineae, and reclassification of Cellulomonas fermentans Bagnara et al. 1985 as Actinotalea fermentans gen. nov., comb. nov.
Int J Syst Evol Microbiol, January 1, 2007; 57(1): 151 - 156.
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Int. J. Syst. Evol. Microbiol.Home page
S. Ramamoorthy, H. Sass, H. Langner, P. Schumann, R. M. Kroppenstedt, S. Spring, J. Overmann, and R. F. Rosenzweig
Desulfosporosinus lacus sp. nov., a sulfate-reducing bacterium isolated from pristine freshwater lake sediments
Int J Syst Evol Microbiol, December 1, 2006; 56(12): 2729 - 2736.
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Int. J. Syst. Evol. Microbiol.Home page
B.-Y. Kim, H.-Y. Weon, S.-H. Yoo, S.-Y. Lee, S.-W. Kwon, S.-J. Go, and E. Stackebrandt
Variovorax soli sp. nov., isolated from greenhouse soil
Int J Syst Evol Microbiol, December 1, 2006; 56(12): 2899 - 2901.
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Int. J. Syst. Evol. Microbiol.Home page
A. H. Kaksonen, S. Spring, P. Schumann, R. M. Kroppenstedt, and J. A. Puhakka
Desulfotomaculum thermosubterraneum sp. nov., a thermophilic sulfate-reducer isolated from an underground mine located in a geothermally active area.
Int J Syst Evol Microbiol, November 1, 2006; 56(Pt 11): 2603 - 2608.
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Int. J. Syst. Evol. Microbiol.Home page
B.-Y. Kim, H.-Y. Weon, S.-H. Yoo, J.-S. Kim, S.-W. Kwon, E. Stackebrandt, and S.-J. Go
Marinobacter koreensis sp. nov., isolated from sea sand in Korea.
Int J Syst Evol Microbiol, November 1, 2006; 56(Pt 11): 2653 - 2656.
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Int. J. Syst. Evol. Microbiol.Home page
S.-H. Yoo, H.-Y. Weon, B.-Y. Kim, S.-B. Hong, S.-W. Kwon, Y.-H. Cho, S.-J. Go, and E. Stackebrandt
Devosia soli sp. nov., isolated from greenhouse soil in Korea.
Int J Syst Evol Microbiol, November 1, 2006; 56(Pt 11): 2689 - 2692.
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Int. J. Syst. Evol. Microbiol.Home page
B.-Y. Kim, H.-Y. Weon, S.-H. Yoo, S.-W. Kwon, Y.-H. Cho, E. Stackebrandt, and S.-J. Go
Paracoccus homiensis sp. nov., isolated from a sea-sand sample.
Int J Syst Evol Microbiol, October 1, 2006; 56(Pt 10): 2387 - 2390.
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Int. J. Syst. Evol. Microbiol.Home page
J.-H. Yoon, S.-J. Kang, P. Schumann, and T.-K. Oh
Yonghaparkia alkaliphila gen. nov., sp. nov., a novel member of the family Microbacteriaceae isolated from an alkaline soil.
Int J Syst Evol Microbiol, October 1, 2006; 56(Pt 10): 2415 - 2420.
[Abstract] [Full Text] [PDF]


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Int. J. Syst. Evol. Microbiol.Home page
B.-Y. Kim, H.-Y. Weon, K.-H. Lee, S.-J. Seok, S.-W. Kwon, S.-J. Go, and E. Stackebrandt
Dyella yeojuensis sp. nov., isolated from greenhouse soil in Korea.
Int J Syst Evol Microbiol, September 1, 2006; 56(Pt 9): 2079 - 2082.
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Int. J. Syst. Evol. Microbiol.Home page
H.-Y. Weon, B.-Y. Kim, S.-H. Yoo, Y.-K. Baek, S.-Y. Lee, S.-W. Kwon, S.-J. Go, and E. Stackebrandt
Pseudomonas pohangensis sp. nov., isolated from seashore sand in Korea.
Int J Syst Evol Microbiol, September 1, 2006; 56(Pt 9): 2153 - 2156.
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Int. J. Syst. Evol. Microbiol.Home page
H.-Y. Weon, B.-Y. Kim, S.-H. Yoo, J.-S. Kim, S.-W. Kwon, S.-J. Go, and E. Stackebrandt
Loktanella koreensis sp. nov., isolated from sea sand in Korea.
Int J Syst Evol Microbiol, September 1, 2006; 56(Pt 9): 2199 - 2202.
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Int. J. Syst. Evol. Microbiol.Home page
S.-W. Kwon, B.-Y. Kim, H.-Y. Weon, Y.-K. Baek, B.-S. Koo, and S.-J. Go
Idiomarina homiensis sp. nov., isolated from seashore sand in Korea.
Int J Syst Evol Microbiol, September 1, 2006; 56(Pt 9): 2229 - 2233.
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Int. J. Syst. Evol. Microbiol.Home page
B.-Y. Kim, H.-Y. Weon, S.-H. Yoo, W.-M. Chen, S.-W. Kwon, S.-J. Go, and E. Stackebrandt
Chitinimonas koreensis sp. nov., isolated from greenhouse soil in Korea.
Int J Syst Evol Microbiol, August 1, 2006; 56(Pt 8): 1761 - 1764.
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Int. J. Syst. Evol. Microbiol.Home page
H.-Y. Weon, B.-Y. Kim, S.-H. Yoo, S.-Y. Lee, S.-W. Kwon, S.-J. Go, and E. Stackebrandt
Niastella koreensis gen. nov., sp. nov. and Niastella yeongjuensis sp. nov., novel members of the phylum Bacteroidetes, isolated from soil cultivated with Korean ginseng.
Int J Syst Evol Microbiol, August 1, 2006; 56(Pt 8): 1777 - 1782.
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S. Mayilraj, K. Suresh, P. Schumann, R. M. Kroppenstedt, and H. S. Saini
Agrococcus lahaulensis sp. nov., isolated from a cold desert of the Indian Himalayas.
Int J Syst Evol Microbiol, August 1, 2006; 56(Pt 8): 1807 - 1810.
[Abstract] [Full Text] [PDF]




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