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1 Unité de Virologie et Immunologie Moléculaires, Institut National de la Recherche Agronomique, 78352 Jouy-en-Josas Cedex, France
2 Laboratorium voor Microbiologie, Faculteit Wetenschappen, University of Ghent, B-9000 Ghent, Belgium
* Corresponding author. Phone: (33) 1 34-65-25-87. Fax: (33) 1 34-65-25-91.
ABSTRACT
The phylogenetic positions and G+C contents of most species belonging to the genera Flavobacterium, Cytophaga, and Flexibacter and several related taxa were determined. Most of the strains included in this study belong to rRNA superfamily V, as shown by DNA-rRNA hybridization data, but the three main genera are highly polyphyletic. Several so-called Cytophaga and Flexibacter species isolated from soil and freshwater cluster with the type species of the genus Flavobacterium, Flavobacterium aquatile, and with Flavobacterium branchiophilum. The fatty acid and protein profiles of members of this group of organisms were determined. We provide an emended description of the genus Flavobacterium and propose new combinations for the following 7 of the 10 validly described species included in this genus: Flavobacterium columnare, Flavobacterium flevense, Flavobacterium johnsoniae (we also correct the specific epithet of this taxon), Flavobacterium pectinovarum, Flavobacterium psychrophilum, Flavobacterium saccharophilum, and Flavobacterium succinicans. A new name, Flavobacterium hydatis, is proposed for [Cytophaga] aquatilis Strohl and Tait 1978. The emended genus Flavobacterium contains bacteria that have the following main characteristics: gram-negative rods that are motile by gliding, produce yellow colonies on agar, are chemoorganotrophs and aerobes, decompose several polysaccharides but not cellulose, and are widely distributed in soil and freshwater habitats. Three Flavobacterium species are pathogenic for fish. The G+C contents of Flavobacterium DNAs range from 32 to 37 mol%. An emended description of the family Flavobacteriaceae is also provided.
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S. T. Khan, Y. Nakagawa, and S. Harayama Krokinobacter gen. nov., with three novel species, in the family Flavobacteriaceae Int J Syst Evol Microbiol, February 1, 2006; 56(2): 323 - 328. [Abstract] [Full Text] [PDF]
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Z.-W. Wang, Y.-H. Liu, X. Dai, B.-J. Wang, C.-Y. Jiang, and S.-J. Liu Flavobacterium saliperosum sp. nov., isolated from freshwater lake sediment Int J Syst Evol Microbiol, February 1, 2006; 56(2): 439 - 442. [Abstract] [Full Text] [PDF]
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L. A. O'Sullivan, J. Rinna, G. Humphreys, A. J. Weightman, and J. C. Fry Culturable phylogenetic diversity of the phylum 'Bacteroidetes' from river epilithon and coastal water and description of novel members of the family Flavobacteriaceae: Epilithonimonas tenax gen. nov., sp. nov. and Persicivirga xylanidelens gen. nov., sp. nov. Int J Syst Evol Microbiol, January 1, 2006; 56(1): 169 - 180. [Abstract] [Full Text] [PDF]
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S. C. K. Lau, M. M. Y. Tsoi, X. Li, I. Plakhotnikova, S. Dobretsov, M. Wu, P.-K. Wong, J. R. Pawlik, and P.-Y. Qian Stenothermobacter spongiae gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from a marine sponge in the Bahamas, and emended description of Nonlabens tegetincola Int J Syst Evol Microbiol, January 1, 2006; 56(1): 181 - 185. [Abstract] [Full Text] [PDF]
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S. C. K. Lau, M. M. Y. Tsoi, X. Li, I. Plakhotnikova, S. Dobretsov, P.-K. Wong, J. R. Pawlik, and P.-Y. Qian Nonlabens tegetincola gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from a microbial mat in a subtropical estuary Int J Syst Evol Microbiol, November 1, 2005; 55(6): 2279 - 2283. [Abstract] [Full Text] [PDF]
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S. C. K. Lau, M. M. Y. Tsoi, X. Li, I. Plakhotnikova, S. Dobretsov, P.-K. Wong, and P.-Y. Qian Gramella portivictoriae sp. nov., a novel member of the family Flavobacteriaceae isolated from marine sediment Int J Syst Evol Microbiol, November 1, 2005; 55(6): 2497 - 2500. [Abstract] [Full Text] [PDF]
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O. I. Nedashkovskaya, S. B. Kim, A. M. Lysenko, M. S. Park, V. V. Mikhailov, K. S. Bae, and H. Y. Park Roseivirga echinicomitans sp. nov., a novel marine bacterium isolated from the sea urchin Strongylocentrotus intermedius, and emended description of the genus Roseivirga Int J Syst Evol Microbiol, September 1, 2005; 55(5): 1797 - 1800. [Abstract] [Full Text] [PDF]
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S.-Y. Jung, S.-J. Kang, M.-H. Lee, S.-Y. Lee, T.-K. Oh, and J.-H. Yoon Gaetbulibacter saemankumensis gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from a tidal flat sediment in Korea Int J Syst Evol Microbiol, September 1, 2005; 55(5): 1845 - 1849. [Abstract] [Full Text] [PDF]
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H. de Beer, C. J. Hugo, P. J. Jooste, A. Willems, M. Vancanneyt, T. Coenye, and P. A. R. Vandamme Chryseobacterium vrystaatense sp. nov., isolated from raw chicken in a chicken-processing plant Int J Syst Evol Microbiol, September 1, 2005; 55(5): 2149 - 2153. [Abstract] [Full Text] [PDF]
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L. A. O'Sullivan, J. Rinna, G. Humphreys, A. J. Weightman, and J. C. Fry Fluviicola taffensis gen. nov., sp. nov., a novel freshwater bacterium of the family Cryomorphaceae in the phylum 'Bacteroidetes' Int J Syst Evol Microbiol, September 1, 2005; 55(5): 2189 - 2194. [Abstract] [Full Text] [PDF]
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J. P. Bowman and D. S. Nichols Novel members of the family Flavobacteriaceae from Antarctic maritime habitats including Subsaximicrobium wynnwilliamsii gen. nov., sp. nov., Subsaximicrobium saxinquilinus sp. nov., Subsaxibacter broadyi gen. nov., sp. nov., Lacinutrix copepodicola gen. nov., sp. nov., and novel species of the genera Bizionia, Gelidibacter and Gillisia Int J Syst Evol Microbiol, July 1, 2005; 55(4): 1471 - 1486. [Abstract] [Full Text] [PDF]
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 M. Soule, K. Cain, S. LaFrentz, and D. R. Call Combining Suppression Subtractive Hybridization and Microarrays To Map the Intraspecies Phylogeny of Flavobacterium psychrophilum Infect. Immun., June 1, 2005; 73(6): 3799 - 3802. [Abstract] [Full Text] [PDF]
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M. A. Horn, J. Ihssen, C. Matthies, A. Schramm, G. Acker, and H. L. Drake Dechloromonas denitrificans sp. nov., Flavobacterium denitrificans sp. nov., Paenibacillus anaericanus sp. nov. and Paenibacillus terrae strain MH72, N2O-producing bacteria isolated from the gut of the earthworm Aporrectodea caliginosa Int J Syst Evol Microbiol, May 1, 2005; 55(3): 1255 - 1265. [Abstract] [Full Text] [PDF]
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K. K. Kim, M. K. Kim, J. H. Lim, H. Y. Park, and S.-T. Lee Transfer of Chryseobacterium meningosepticum and Chryseobacterium miricola to Elizabethkingia gen. nov. as Elizabethkingia meningoseptica comb. nov. and Elizabethkingia miricola comb. nov. Int J Syst Evol Microbiol, May 1, 2005; 55(3): 1287 - 1293. [Abstract] [Full Text] [PDF]
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H. Yi, H.-M. Oh, J.-H. Lee, S.-J. Kim, and J. Chun Flavobacterium antarcticum sp. nov., a novel psychrotolerant bacterium isolated from the Antarctic Int J Syst Evol Microbiol, March 1, 2005; 55(2): 637 - 641. [Abstract] [Full Text] [PDF]
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Z. Aslam, W.-T. Im, M. K. Kim, and S.-T. Lee Flavobacterium granuli sp. nov., isolated from granules used in a wastewater treatment plant Int J Syst Evol Microbiol, March 1, 2005; 55(2): 747 - 751. [Abstract] [Full Text] [PDF]
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S. Van Trappen, I. Vandecandelaere, J. Mergaert, and J. Swings Flavobacterium fryxellicola sp. nov. and Flavobacterium psychrolimnae sp. nov., novel psychrophilic bacteria isolated from microbial mats in Antarctic lakes Int J Syst Evol Microbiol, March 1, 2005; 55(2): 769 - 772. [Abstract] [Full Text] [PDF]
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J.-H. Yoon, S.-J. Kang, and T.-K. Oh Tenacibaculum lutimaris sp. nov., isolated from a tidal flat in the Yellow Sea, Korea Int J Syst Evol Microbiol, March 1, 2005; 55(2): 793 - 798. [Abstract] [Full Text] [PDF]
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J.-H. Yoon, S.-J. Kang, C.-H. Lee, and T.-K. Oh Marinicola seohaensis gen. nov., sp. nov., isolated from sea water of the Yellow Sea, Korea Int J Syst Evol Microbiol, March 1, 2005; 55(2): 859 - 863. [Abstract] [Full Text] [PDF]
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O. I. Nedashkovskaya, S. B. Kim, K. H. Lee, K. S. Bae, G. M. Frolova, V. V. Mikhailov, and I. S. Kim Pibocella ponti gen. nov., sp. nov., a novel marine bacterium of the family Flavobacteriaceae isolated from the green alga Acrosiphonia sonderi Int J Syst Evol Microbiol, January 1, 2005; 55(1): 177 - 181. [Abstract] [Full Text] [PDF]
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