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1Departments of Biochemical and Biophysical Sciences, University of Houston, Houston, Texas 77204-5934
2Departments of Biochemical and Biology, University of Houston, Houston, Texas 77204-5934
* Corresponding author.
ABSTRACT
16S rRNA (genes coding for rRNA) sequence comparisons were conducted with the following three psychrophilic strains: Bacillus globisporus W25T (T = type strain) and Bacillus psychrophilus W16AT, and W5. These strains exhibited more than 99.5% sequence identity and within experimental uncertainty could be regarded as identical. Their close taxonomic relationship was further documented by phenotypic similarities. In contrast, previously published DNA-DNA hybridization results have convincingly established that these strains do not belong to the same species if current standards are used. These results emphasize the important point that effective identity of 16S rRNA sequences is not necessarily a sufficient criterion to guarantee species identity. Thus, although 16S rRNA sequences can be used routinely to distinguish and establish relationships between genera and well-resolved species, very recently diverged species may not be recognizable.
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S. G. Acinas, L. A. Marcelino, V. Klepac-Ceraj, and M. F. Polz Divergence and Redundancy of 16S rRNA Sequences in Genomes with Multiple rrn Operons J. Bacteriol., May 1, 2004; 186(9): 2629 - 2635. [Abstract] [Full Text] [PDF]
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K. S. Blackwood, C. Y. Turenne, D. Harmsen, and A. M. Kabani Reassessment of Sequence-Based Targets for Identification of Bacillus Species J. Clin. Microbiol., April 1, 2004; 42(4): 1626 - 1630. [Abstract] [Full Text] [PDF]
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R. Harasawa, D. G. Pitcher, A. S. Ramirez, and J. M. Bradbury A putative transposase gene in the 16S-23S rRNA intergenic spacer region of Mycoplasma imitans Microbiology, April 1, 2004; 150(4): 1023 - 1029. [Abstract] [Full Text] [PDF]
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I.-M. Lee, M. Martini, C. Marcone, and S. F. Zhu Classification of phytoplasma strains in the elm yellows group (16SrV) and proposal of 'Candidatus Phytoplasma ulmi' for the phytoplasma associated with elm yellows Int J Syst Evol Microbiol, March 1, 2004; 54(2): 337 - 347. [Abstract] [Full Text] [PDF]
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T. Adekambi, P. Colson, and M. Drancourt rpoB-Based Identification of Nonpigmented and Late-Pigmenting Rapidly Growing Mycobacteria J. Clin. Microbiol., December 1, 2003; 41(12): 5699 - 5708. [Abstract] [Full Text] [PDF]
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J. Tapp, M. Thollesson, and B. Herrmann Phylogenetic relationships and genotyping of the genus Streptococcus by sequence determination of the RNase P RNA gene, rnpB Int J Syst Evol Microbiol, November 1, 2003; 53(6): 1861 - 1871. [Abstract] [Full Text] [PDF]
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D. R. Zeigler Gene sequences useful for predicting relatedness of whole genomes in bacteria Int J Syst Evol Microbiol, November 1, 2003; 53(6): 1893 - 1900. [Abstract] [Full Text] [PDF]
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K. Kawata, T. Minakami, Y. Mori, M. Katsumi, Y. Kataoka, A. Ezawa, N. Kikuchi, and T. Takahashi rDNA sequence analyses of Streptococcus dysgalactiae subsp. equisimilis isolates from pigs Int J Syst Evol Microbiol, November 1, 2003; 53(6): 1941 - 1946. [Abstract] [Full Text] [PDF]
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A. Khamis, P. Colson, D. Raoult, and B. L. Scola Usefulness of rpoB Gene Sequencing for Identification of Afipia and Bosea Species, Including a Strategy for Choosing Discriminative Partial Sequences Appl. Envir. Microbiol., November 1, 2003; 69(11): 6740 - 6749. [Abstract] [Full Text] [PDF]
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M. Ventura, C. Canchaya, V. Meylan, T. R. Klaenhammer, and R. Zink Analysis, Characterization, and Loci of the tuf Genes in Lactobacillus and Bifidobacterium Species and Their Direct Application for Species Identification Appl. Envir. Microbiol., November 1, 2003; 69(11): 6908 - 6922. [Abstract] [Full Text] [PDF]
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P. P. Bosshard, S. Abels, R. Zbinden, E. C. Bottger, and M. Altwegg Ribosomal DNA Sequencing for Identification of Aerobic Gram-Positive Rods in the Clinical Laboratory (an 18-Month Evaluation) J. Clin. Microbiol., September 1, 2003; 41(9): 4134 - 4140. [Abstract] [Full Text] [PDF]
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N. Ladron, M. Fernandez, J. Aguero, B. G. Zorn, J. A. Vazquez-Boland, and J. Navas Rapid Identification of Rhodococcus equi by a PCR Assay Targeting the choE Gene J. Clin. Microbiol., July 1, 2003; 41(7): 3241 - 3245. [Abstract] [Full Text] [PDF]
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C. Streten and K. S. Gibb Identification of genes in the tomato big bud phytoplasma and comparison to those in sweet potato little leaf-V4 phytoplasma Microbiology, July 1, 2003; 149(7): 1797 - 1805. [Abstract] [Full Text] [PDF]
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G. Gorkiewicz, G. Feierl, C. Schober, F. Dieber, J. Kofer, R. Zechner, and E. L. Zechner Species-Specific Identification of Campylobacters by Partial 16S rRNA Gene Sequencing J. Clin. Microbiol., June 1, 2003; 41(6): 2537 - 2546. [Abstract] [Full Text] [PDF]
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P. S. Conville, J. M. Brown, A. G. Steigerwalt, J. W. Lee, D. E. Byrer, V. L. Anderson, S. E. Dorman, S. M. Holland, B. Cahill, K. C. Carroll, et al. Nocardia veterana as a Pathogen in North American Patients J. Clin. Microbiol., June 1, 2003; 41(6): 2560 - 2568. [Abstract] [Full Text] [PDF]
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D. Xu and J.-C. Cote Phylogenetic relationships between Bacillus species and related genera inferred from comparison of 3' end 16S rDNA and 5' end 16S-23S ITS nucleotide sequences Int J Syst Evol Microbiol, May 1, 2003; 53(3): 695 - 704. [Abstract] [Full Text] [PDF]
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E. Tortoli Impact of Genotypic Studies on Mycobacterial Taxonomy: the New Mycobacteria of the 1990s Clin. Microbiol. Rev., April 1, 2003; 16(2): 319 - 354. [Abstract] [Full Text] [PDF]
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Y. Song, C. Liu, M. McTeague, and S. M. Finegold 16S Ribosomal DNA Sequence-Based Analysis of Clinically Significant Gram-Positive Anaerobic Cocci J. Clin. Microbiol., April 1, 2003; 41(4): 1363 - 1369. [Abstract] [Full Text] [PDF]
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M. Satomi, H. Oikawa, and Y. Yano Shewanella marinintestina sp. nov., Shewanella schlegeliana sp. nov. and Shewanella sairae sp. nov., novel eicosapentaenoic-acid-producing marine bacteria isolated from sea-animal intestines Int J Syst Evol Microbiol, March 1, 2003; 53(2): 491 - 499. [Abstract] [Full Text] [PDF]
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B. La Scola, M.-N. Mallet, P. A. D. Grimont, and D. Raoult Bosea eneae sp. nov., Bosea massiliensis sp. nov. and Bosea vestrisii sp. nov., isolated from hospital water supplies, and emendation of the genus Bosea (Das et al. 1996) Int J Syst Evol Microbiol, January 1, 2003; 53(1): 15 - 20. [Abstract] [Full Text] [PDF]
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K. Venkateswaran, M. Kempf, F. Chen, M. Satomi, W. Nicholson, and R. Kern Bacillus nealsonii sp. nov., isolated from a spacecraft-assembly facility, whose spores are {gamma}-radiation resistant Int J Syst Evol Microbiol, January 1, 2003; 53(1): 165 - 172. [Abstract] [Full Text] [PDF]
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A. Ernst, S. Becker, U. I. A. Wollenzien, and C. Postius Ecosystem-dependent adaptive radiations of picocyanobacteria inferred from 16S rRNA and ITS-1 sequence analysis Microbiology, January 1, 2003; 149(1): 217 - 228. [Abstract] [Full Text] [PDF]
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J.-E. Germond, L. Lapierre, M. Delley, B. Mollet, G. E. Felis, and F. Dellaglio Evolution of the Bacterial Species Lactobacillus delbrueckii: A Partial Genomic Study with Reflections on Prokaryotic Species Concept Mol. Biol. Evol., January 1, 2003; 20(1): 93 - 104. [Abstract] [Full Text] [PDF]
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D. L. Distel, D. J. Beaudoin, and W. Morrill Coexistence of Multiple Proteobacterial Endosymbionts in the Gills of the Wood-Boring Bivalve Lyrodus pedicellatus (Bivalvia: Teredinidae) Appl. Envir. Microbiol., December 1, 2002; 68(12): 6292 - 6299. [Abstract] [Full Text] [PDF]
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M. Ucko, A. Colorni, H. Kvitt, A. Diamant, A. Zlotkin, and W. R. Knibb Strain Variation in Mycobacteriummarinum Fish Isolates Appl. Envir. Microbiol., November 1, 2002; 68(11): 5281 - 5287. [Abstract] [Full Text] [PDF]
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Z. Zeaiter, Z. Liang, and D. Raoult Genetic Classification and Differentiation of Bartonella Species Based on Comparison of Partial ftsZ Gene Sequences J. Clin. Microbiol., October 1, 2002; 40(10): 3641 - 3647. [Abstract] [Full Text] [PDF]
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V. Obregon, P. Garcia, E. Garcia, A. Fenoll, R. Lopez, and J. L. Garcia Molecular Peculiarities of the lytA Gene Isolated from Clinical Pneumococcal Strains That Are Bile Insoluble J. Clin. Microbiol., July 1, 2002; 40(7): 2545 - 2554. [Abstract] [Full Text] [PDF]
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S. K. P. Lau, P. C. Y. Woo, G. K. S. Woo, and K.-Y. Yuen Catheter-Related Microbacterium Bacteremia Identified by 16S rRNA Gene Sequencing J. Clin. Microbiol., July 1, 2002; 40(7): 2681 - 2685. [Abstract] [Full Text] [PDF]
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H. Oberreuter, J. Charzinski, and S. Scherer Intraspecific diversity of Brevibacterium linens, Corynebacterium glutamicum and Rhodococcus erythropolis based on partial 16S rDNA sequence analysis and Fourier-transform infrared (FT-IR) spectroscopy Microbiology, May 1, 2002; 148(5): 1523 - 1532. [Abstract] [Full Text] [PDF]
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