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Department of Microbiology. School of Medicine, Gifu University, 40 Tsukasa-machi, Gifu, 500 Japan
* Corresponding author.
ABSTRACT
Fluorometric hybridization in microdilution wells was developed to determine genetic relatedness among microorganisms. Total chromosomal deoxyribonucleic acid (DNA) for hybridization reactions was labeled with photoreactive biotin (photobiotin). The biotinylated DNA was hybridized with single-stranded unlabeled DNAs which had been immobilized on the surfaces of microdilution wells. After hybridization, biotinylated DNA was quantitatively detected with beta-D-galactosidase and a fluorogenic substrate, 4-methylumbelliferyl-beta-D-galactopyranoside. Homology values obtained with this fluorometric direct binding method were compared with values obtained with two membrane filter methods, one in which photobiotin labeling was used and one in which radioisotope labeling was used. The results showed that the fluorometric direct binding method in which microdilution wells are used could be an alternative to radioisotope and membrane filter hybridization methods.
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L. A. Romanenko, N. Tanaka, G. M. Frolova, and V. V. Mikhailov Psychrobacter fulvigenes sp. nov., isolated from a marine crustacean from the Sea of Japan Int J Syst Evol Microbiol, June 1, 2009; 59(6): 1480 - 1486. [Abstract] [Full Text] [PDF]
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M. Otoguro, T. Tamura, K.-i. Suzuki, and M. Hayakawa Saccharothrix violaceirubra sp. nov., isolated from soil and plant litter Int J Syst Evol Microbiol, June 1, 2009; 59(6): 1504 - 1507. [Abstract] [Full Text] [PDF]
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K. Watanabe, H. Makino, M. Sasamoto, Y. Kudo, J. Fujimoto, and S. Demberel Bifidobacterium mongoliense sp. nov., from airag, a traditional fermented mare's milk product from Mongolia Int J Syst Evol Microbiol, June 1, 2009; 59(6): 1535 - 1540. [Abstract] [Full Text] [PDF]
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C. Suriyachadkun, S. Chunhametha, C. Thawai, T. Tamura, W. Potacharoen, K. Kirtikara, and J.-J. Sanglier Planotetraspora thailandica sp. nov., isolated from soil in Thailand Int J Syst Evol Microbiol, May 1, 2009; 59(5): 992 - 997. [Abstract] [Full Text] [PDF]
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K. Doi, Y. Nishizaki, Y. Fujino, T. Ohshima, S. Ohmomo, and S. Ogata Pediococcus lolii sp. nov., isolated from ryegrass silage Int J Syst Evol Microbiol, May 1, 2009; 59(5): 1007 - 1010. [Abstract] [Full Text] [PDF]
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S. Qin, H.-H. Chen, H.-P. Klenk, G.-Z. Zhao, J. Li, L.-H. Xu, and W.-J. Li Glycomyces scopariae sp. nov. and Glycomyces mayteni sp. nov., isolated from medicinal plants in China Int J Syst Evol Microbiol, May 1, 2009; 59(5): 1023 - 1027. [Abstract] [Full Text] [PDF]
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H.-H. Chen, G.-Z. Zhao, D.-J. Park, Y.-Q. Zhang, L.-H. Xu, J.-C. Lee, C.-J. Kim, and W.-J. Li Micrococcus endophyticus sp. nov., isolated from surface-sterilized Aquilaria sinensis roots Int J Syst Evol Microbiol, May 1, 2009; 59(5): 1070 - 1075. [Abstract] [Full Text] [PDF]
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P. Vaishampayan, M. Miyashita, A. Ohnishi, M. Satomi, A. Rooney, M. T. La Duc, and K. Venkateswaran Description of Rummeliibacillus stabekisii gen. nov., sp. nov. and reclassification of Bacillus pycnus Nakamura et al. 2002 as Rummeliibacillus pycnus comb. nov. Int J Syst Evol Microbiol, May 1, 2009; 59(5): 1094 - 1099. [Abstract] [Full Text] [PDF]
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L. Debruyne, S. L. W. On, E. De Brandt, and P. Vandamme Novel Campylobacter lari-like bacteria from humans and molluscs: description of Campylobacter peloridis sp. nov., Campylobacter lari subsp. concheus subsp. nov. and Campylobacter lari subsp. lari subsp. nov. Int J Syst Evol Microbiol, May 1, 2009; 59(5): 1126 - 1132. [Abstract] [Full Text] [PDF]
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I. Vandecandelaere, E. Segaert, A. Mollica, M. Faimali, and P. Vandamme Phaeobacter caeruleus sp. nov., a blue-coloured, colony-forming bacterium isolated from a marine electroactive biofilm Int J Syst Evol Microbiol, May 1, 2009; 59(5): 1209 - 1214. [Abstract] [Full Text] [PDF]
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M. K. Kim, S. Sathiyaraj, R. K. Pulla, and D.-C. Yang Brevibacillus panacihumi sp. nov., a {beta}-glucosidase-producing bacterium Int J Syst Evol Microbiol, May 1, 2009; 59(5): 1227 - 1231. [Abstract] [Full Text] [PDF]
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 J. L. Zurdo-Pineiro, P. Garcia-Fraile, R. Rivas, A. Peix, M. Leon-Barrios, A. Willems, P. F. Mateos, E. Martinez-Molina, E. Velazquez, and P. van Berkum Rhizobia from Lanzarote, the Canary Islands, That Nodulate Phaseolus vulgaris Have Characteristics in Common with Sinorhizobium meliloti Isolates from Mainland Spain Appl. Envir. Microbiol., April 15, 2009; 75(8): 2354 - 2359. [Abstract] [Full Text] [PDF]
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H.-Y. Kahng, B. S. Chung, D.-H. Lee, J. S. Jung, J. H. Park, and C. O. Jeon Cellulophaga tyrosinoxydans sp. nov., a tyrosinase-producing bacterium isolated from seawater Int J Syst Evol Microbiol, April 1, 2009; 59(4): 654 - 657. [Abstract] [Full Text] [PDF]
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Z. Aslam, M. Yasir, C. O. Jeon, and Y. R. Chung Lysobacter oryzae sp. nov., isolated from the rhizosphere of rice (Oryza sativa L.) Int J Syst Evol Microbiol, April 1, 2009; 59(4): 675 - 680. [Abstract] [Full Text] [PDF]
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M.-C. Lin, S.-R. Jiang, J.-H. Chou, A. B. Arun, C.-C. Young, and W.-M. Chen Aquabacterium fontiphilum sp. nov., isolated from spring water Int J Syst Evol Microbiol, April 1, 2009; 59(4): 681 - 685. [Abstract] [Full Text] [PDF]
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S. Hosoya, K. Adachi, and H. Kasai Thalassomonas actiniarum sp. nov. and Thalassomonas haliotis sp. nov., isolated from marine animals Int J Syst Evol Microbiol, April 1, 2009; 59(4): 686 - 690. [Abstract] [Full Text] [PDF]
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D.-S. An, H.-G. Lee, S.-T. Lee, and W.-T. Im Rhodanobacter ginsenosidimutans sp. nov., isolated from soil of a ginseng field in South Korea Int J Syst Evol Microbiol, April 1, 2009; 59(4): 691 - 694. [Abstract] [Full Text] [PDF]
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K. Watanabe, J. Fujimoto, Y. Tomii, M. Sasamoto, H. Makino, Y. Kudo, and S. Okada Lactobacillus kisonensis sp. nov., Lactobacillus otakiensis sp. nov., Lactobacillus rapi sp. nov. and Lactobacillus sunkii sp. nov., heterofermentative species isolated from sunki, a traditional Japanese pickle Int J Syst Evol Microbiol, April 1, 2009; 59(4): 754 - 760. [Abstract] [Full Text] [PDF]
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S. W. Roh, Y.-D. Nam, H.-W. Chang, K.-H. Kim, M.-S. Kim, K.-S. Shin, J.-H. Yoon, H.-M. Oh, and J.-W. Bae Paracoccus aestuarii sp. nov., isolated from tidal flat sediment Int J Syst Evol Microbiol, April 1, 2009; 59(4): 790 - 794. [Abstract] [Full Text] [PDF]
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I. Vandecandelaere, O. Nercessian, E. Segaert, W. Achouak, A. Mollica, M. Faimali, and P. Vandamme Nautella italica gen. nov., sp. nov., isolated from a marine electroactive biofilm Int J Syst Evol Microbiol, April 1, 2009; 59(4): 811 - 817. [Abstract] [Full Text] [PDF]
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C. Vidal, C. Chantreuil, O. Berge, L. Maure, J. Escarre, G. Bena, B. Brunel, and J.-C. Cleyet-Marel Mesorhizobium metallidurans sp. nov., a metal-resistant symbiont of Anthyllis vulneraria growing on metallicolous soil in Languedoc, France Int J Syst Evol Microbiol, April 1, 2009; 59(4): 850 - 855. [Abstract] [Full Text] [PDF]
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L. Ding, T. Hirose, and A. Yokota Four novel Arthrobacter species isolated from filtration substrate Int J Syst Evol Microbiol, April 1, 2009; 59(4): 856 - 862. [Abstract] [Full Text] [PDF]
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N. Chamroensaksri, S. Tanasupawat, A. Akaracharanya, W. Visessanguan, T. Kudo, and T. Itoh Salinivibrio siamensis sp. nov., from fermented fish (pla-ra) in Thailand Int J Syst Evol Microbiol, April 1, 2009; 59(4): 880 - 885. [Abstract] [Full Text] [PDF]
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H.-M. Jung, L. N. Ten, K.-H. Kim, D. S. An, W.-T. Im, and S.-T. Lee Dyella ginsengisoli sp. nov., isolated from soil of a ginseng field in South Korea Int J Syst Evol Microbiol, March 1, 2009; 59(3): 460 - 465. [Abstract] [Full Text] [PDF]
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T. Malimas, P. Yukphan, M. Takahashi, Y. Muramatsu, M. Kaneyasu, W. Potacharoen, S. Tanasupawat, Y. Nakagawa, M. Tanticharoen, and Y. Yamada Gluconobacter japonicus sp. nov., an acetic acid bacterium in the Alphaproteobacteria Int J Syst Evol Microbiol, March 1, 2009; 59(3): 466 - 471. [Abstract] [Full Text] [PDF]
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M. Tseng, S.-F. Yang, K.-C. Hoang, H.-C. Liao, G.-F. Yuan, and C.-C. Liao Actinomadura miaoliensis sp. nov., a thermotolerant polyester-degrading actinomycete Int J Syst Evol Microbiol, March 1, 2009; 59(3): 517 - 520. [Abstract] [Full Text] [PDF]
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Y.-G. Chen, Y.-Q. Zhang, K. Huang, S.-K. Tang, Y. Cao, J.-X. Shi, H.-D. Xiao, X.-L. Cui, and W.-J. Li Pigmentiphaga litoralis sp. nov., a facultatively anaerobic bacterium isolated from a tidal flat sediment Int J Syst Evol Microbiol, March 1, 2009; 59(3): 521 - 525. [Abstract] [Full Text] [PDF]
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Y. Shao, B. S. Chung, S. S. Lee, W. Park, S.-S. Lee, and C. O. Jeon Zoogloea caeni sp. nov., a floc-forming bacterium isolated from activated sludge Int J Syst Evol Microbiol, March 1, 2009; 59(3): 526 - 530. [Abstract] [Full Text] [PDF]
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Y. Sakiyama, N. K. N. Thao, N. M. Giang, S. Miyadoh, D. V. Hop, and K. Ando Kineosporia babensis sp. nov., isolated from plant litter in Vietnam Int J Syst Evol Microbiol, March 1, 2009; 59(3): 550 - 554. [Abstract] [Full Text] [PDF]
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H.-H. Chen, S. Qin, J. Li, Y.-Q. Zhang, L.-H. Xu, C.-L. Jiang, C.-J. Kim, and W.-J. Li Pseudonocardia endophytica sp. nov., isolated from the pharmaceutical plant Lobelia clavata Int J Syst Evol Microbiol, March 1, 2009; 59(3): 559 - 563. [Abstract] [Full Text] [PDF]
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S. Khianngam, A. Akaracharanya, S. Tanasupawat, K. C. Lee, and J.-S. Lee Paenibacillus thailandensis sp. nov. and Paenibacillus nanensis sp. nov., xylanase-producing bacteria isolated from soil Int J Syst Evol Microbiol, March 1, 2009; 59(3): 564 - 568. [Abstract] [Full Text] [PDF]
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Y.-G. Chen, X.-L. Cui, Y.-X. Wang, S.-K. Tang, Y.-Q. Zhang, W.-J. Li, J.-H. Liu, Q. Peng, and L.-H. Xu Psychroflexus sediminis sp. nov., a mesophilic bacterium isolated from salt lake sediment in China Int J Syst Evol Microbiol, March 1, 2009; 59(3): 569 - 573. [Abstract] [Full Text] [PDF]
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S. Mitra, Y. Matsuo, T. Haga, M. Yasumoto-Hirose, J. Yoon, H. Kasai, and A. Yokota Leptobacterium flavescens gen. nov., sp. nov., a marine member of the family Flavobacteriaceae, isolated from marine sponge and seawater Int J Syst Evol Microbiol, February 1, 2009; 59(2): 207 - 212. [Abstract] [Full Text] [PDF]
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V. H. Pham, S.-J. Park, Y. Roh, D.-H. Roh, and S.-K. Rhee Diaphorobacter oryzae sp. nov., isolated from a thiosulfate-oxidizing enrichment culture Int J Syst Evol Microbiol, February 1, 2009; 59(2): 218 - 221. [Abstract] [Full Text] [PDF]
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M. Sakamoto, H. Kumada, N. Hamada, Y. Takahashi, M. Okamoto, M. A. Bakir, and Y. Benno Prevotella falsenii sp. nov., a Prevotella intermedia-like organism isolated from monkey dental plaque Int J Syst Evol Microbiol, February 1, 2009; 59(2): 319 - 322. [Abstract] [Full Text] [PDF]
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