Phylogenomics and protein signatures elucidating the evolutionary relationships among the Gammaproteobacteria, by B. Gao, R. Mohan and R. S. Gupta
International Journal of Systematic and Evolutionary Microbiology vol. 59, part 2, pp. 234 - 247
Supplementary Table S1. List of proteins used in the phylogenetic analysis. [PDF] 111 KB
Supplementary Table S2. Bacterial strains used to produce the set I and set II concatenated alignments. [PDF] 129 KB
Supplementary Figure S1. Concatenated sequence alignment of 36 proteins, after processing with the Gblock
0.91b program. [PDF] 433 KB
Supplementary Figure S2. A neighbour-joining
distance tree for gammaproteobacteria based on concatenated sequences for 36 proteins. [PDF] 237 KB
Supplementary Figure S3. Branching pattern of gammaproteobacteria in ML/MP trees based on concatenated sequences for 13 proteins. [PDF] 136 KB
Supplementary Figure S4. Partial sequence alignments of the ribosomal protein L16 showing a 1 aa deletion that is uniquely found in various species from the orders Enterobacteriales, Pasteurellales, Vibrionales and also many Alteromonadales, but absent in all other Gammaproteobacteria or other bacteria. [PDF] 27 KB
