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Supplementary figures

A multilocus phylogeny of the Streptomyces griseus 16S rRNA gene clade: use of multilocus sequence analysis for streptomycete systematics, by Yinping Guo, Wen Zheng, Xiaoying Rong and Ying Huang

International Journal of Systematic and Evolutionary Microbiology vol. 58, part 1, pp. 149-159

Fig. S1. Chromosomal locations of the genes used. The positions of the six genes are shown on a map of the genome sequence of S. coelicolor A3(2). The 8,667,507 bp genome is divided into 10 segments, with each segment representing 866,751 bp.

All the following trees were constructed using the neighbour-joing method. Mycobacterium tuberculosis H37Rv was used as the outgroup. Numbers at nodes represent levels (%) of bootstrap support from 1000 resampled datasets. L and P indicate branches that were also recovered using maximum-likelihood and maximum-parsimony methods, respectively. The bar indicates 2 % estimated sequence divergence. Strains of clusters I, II, III and IV are highlighted with blue, yellow, green and red backgrounds, respectively. Figs S2-S9 are available in a single PDF file.

Fig. S2. Phylogenetic relationships among 55 Streptomyces strains based on partial atpD gene sequences.

Fig. S3. Phylogenetic relationships among 53 Streptomyces strains based on partial gyrB gene sequences.

Fig. S4. Phylogenetic relationships among 55 Streptomyces strains based on partial recA gene sequences.

Fig. S5. Phylogenetic relationships among 55 Streptomyces strains based on partial rpoB gene sequences.

Fig. S6. Phylogenetic relationships among 55 Streptomyces strains based on partial trpB gene sequences.

Fig. S7. Phylogenetic relationships among 53 Streptomyces strains based on recA-rpoB-trpB concatenated sequences.

Fig. S8. Phylogenetic relationships among 53 Streptomyces strains based on gyrB-recA-rpoB-trpB concatenated sequences.

Fig. S9. Phylogenetic relationships among 53 Streptomyces strains based on five-gene (atpD-gyrB-recA-rpoB-trpB) concatenated sequences.

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