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1 Biology Department Box 9012, University of Puerto Rico, Mayagüez 00681, Puerto Rico
2 Department of Microbiology and Parasitology, Faculty of Pharmacy, University of Sevilla, 41012 Sevilla, Spain
Correspondence
Rafael Montalvo-Rodríguez
titomontal{at}yahoo.com
| ABSTRACT |
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8c, C18 : 1
7c and C12 : 0 3-OH. Overall, the phenotypic, genotypic and phylogenetic results presented in this study demonstrate that strain MW2aT represents a novel species within the genus Halomonas. The name Halomonas avicenniae sp. nov. is proposed, with strain MW2aT (=CECT 7193T=CCM 7396T) as the type strain.
| MAIN TEXT |
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Strain MW2aT was isolated from the surface of leaves of A. germinans. For isolation, a total of 40 leaves were collected randomly from four trees growing near the solar salterns of Cabo Rojo, Puerto Rico. The leaves were placed in sterile bags (Whirl Pak) containing 1 % phosphate buffer at pH 7 with 15 % (w/v) NaCl and mixed. This procedure allowed suspension of the micro-organisms present in the salt crystals on the surface of the leaves. Ten millilitres of the suspension was then used to generate serial dilutions. The dilutions were poured into agar plates containing SeghalGibbons (SG) medium at 15 % NaCl (Seghal & Gibbons, 1960
). The inoculated plates were incubated at 30 °C. After 3 days of incubation, colonies were selected and purified by using the quadrant streak plate method. Pure cultures were transferred to SG medium for further analysis.
The morphology of the cells was examined by using the Nomarsky technique and scanning electron microscopy with cells at the exponential phase of growth under optimal conditions. Electron microscopy was performed as described previously (Díaz-Muñoz & Montalvo-Rodríguez, 2005
). Gram stain was performed using both heat-fixed smears and smears fixed in 5 % acetic acid (Dussault, 1955
). Macroscopic properties were determined using the classical characterization of colony appearance. Optimal conditions for growth were determined by growing strain MW2aT in SG broth supplemented with 0, 5, 10, 15, 20, 25 and 30 % (w/v) NaCl at temperatures of 20, 25, 30, 35 and 40 °C. The pH range for growth was tested using SG medium containing 5 % NaCl and adjusted to pH 4.0, 5.0, 6.0, 7.0, 8.0, 9.0 and 10.0, with the addition of the appropriate buffering capacity to each medium as described previously (Montalvo-Rodríguez et al., 2000
). The cells were cultivated with constant agitation (150 r.p.m.) and growth was monitored by measuring the absorbance at 600 nm. Cells of strain MW2aT are Gram-negative, non-spore-forming, motile short rods or ovals. At the exponential phase of growth in SG medium with 5 % NaCl at 30 °C, cells were 22.6 µm long and 12 µm wide. On SG medium with 5 % NaCl, colonies were orange, smooth, circular/slightly irregular and convex, with an entire margin. Strain MW2aT grew at NaCl concentrations in the range 025 % (w/v) in SG medium. Growth did not occur at concentrations of NaCl greater than 25 % (w/v). The temperature range for growth was 1240 °C and the pH range was 5.09.0. Optimal growth occurred in SG medium with 5 % (w/v) NaCl at 3035 °C and pH 7.08.0. This combination of conditions produced the shortest generation time (1.42 h).
All of the biochemical tests were carried out with 5 % NaCl and at 30 °C, unless stated otherwise. Catalase activity was determined by addition of a 1 % (w/v) H2O2 solution to colonies on SG agar medium. Oxidase activity was tested using the Dry Slide (Difco) biochemical test (Montalvo-Rodríguez et al., 1998
). Hydrolysis of starch, Tween 80 and aesculin was determined as described by Cowan & Steel (1965)
, with the addition of basal salts [5 % NaCl, 2 % MgSO4.7H2O and 0.2 % KCl (w/v)] to the medium. Hydrolysis of gelatin and production of urease were determined according to Cowan & Steel (1965)
. Citrate utilization was determined on Simmons' citrate medium (Simmons, 1926
) supplemented with basal salts. Acid production from carbohydrates was determined using a phenol red base supplemented with 0.7 % of the carbohydrate tested and basal salts. Motility was determined using SIM medium, supplemented with basal salts. Production of H2S was determined using the API 20E system, as described previously (Yoon et al., 2001
). Growth under anaerobic conditions was determined by incubating strain MW2aT in an anaerobic chamber in SG medium with 5 % NaCl. Tests for sugar fermentation and enzymes (qualitative) were carried out using API 20 NE and API ID 32E (bioMérieux), according to the manufacturer's instructions, with the inoculated fluid at 5 % NaCl and incubation at 30 °C. Nutritional features were determined using Koser medium (Koser, 1923
), as modified by Ventosa et al. (1982)
, which contains the basal salts described above and (%, w/v): KNO3, 0.1; (NH4)2HPO4, 0.1; and KH2PO4, 0.05. The filter-sterilized substrate was added to this medium at a final concentration of 0.1 % (w/v), with the exception of carbohydrates, which were used at a final concentration of 0.2 % (w/v). Strain MW2aT was able to use L-arabinose, D-cellobiose, D-fructose, D-galactose, D-glucose, maltose, D-mannose and glycerol as carbon and energy sources. Antibiotic susceptibility was determined according to the conventional KirbyBauer method (Bauer et al., 1966
). The phenotypic characteristics of strain MW2aT are summarized and compared with those of the type strains of related Halomonas species in Table 1
and in the species description.
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In silico analysis of strain MW2aT using the BLAST program (National Center for Biotechnology) with an almost complete 16S rRNA gene sequence (1433 bp) revealed that this strain was related to the genus Halomonas, with the closest sequence similarity to H. marisflavi KCCM 80003T (98.6 %), a species that represents one of the various groups of this genus. 16S rRNA gene sequence similarities between strain MW2aT and Halomonas elongata ATCC 33173T, Halomonas salina DSM 5928T and Halomonas halodurans DSM 5160T were 92.8, 92.8 and 91.7 %, respectively. Strain MW2aT also showed low sequence similarity to Chromohalobacter salexigens DSM 3043T (93.7 %). Phylogenetic analysis using the neighbour-joining algorithm revealed that strain MW2aT was closely related to H. marisflavi, forming a branch in this cluster with a boostrap value of 100 % (Fig. 1
). The phylogenetic position of strain MW2aT was also confirmed in a tree generated using the maximum-parsimony algorithm.
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8c, C18 : 1
7c and C12 : 0 3-OH. This composition is very similar to those described for other Halomonas species (Table 2
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DNADNA hybridization studies were performed by using the competition procedure of the membrane method (Johnson, 1994
), as described in detail by Mormile et al. (1999)
. The hybridization temperature used was 57.3 °C, which is within the limit of validity for the filter method (De Ley & Tijtgat, 1970
) and the percentage DNADNA relatedness was calculated according to Johnson (1994)
. The experiments were carried out in triplicate. The DNADNA relatedness between strain MW2aT and H. marisflavi KCCM 80003T was 42 %, whereas the relatedness with H. elongata ATCC 33173T and H. salina DSM 5928T was 23 and 13 %, respectively. These levels of DNADNA relatedness are low enough to classify strain MW2aT as representing a genotypically distinct species within the genus Halomonas (Wayne et al., 1987
; Stackebrandt & Goebel, 1994
).
Overall, the phenotypic, phylogenetic, chemotaxonomic and genotypic results presented in this study demonstrate that strain MW2aT represents a novel species within the genus Halomonas, for which the name Halomonas avicenniae sp. nov. is proposed.
Description of Halomonas avicenniae sp. nov.
Halomonas avicenniae [a.vi.cen.ni'ae. N.L. n. Avicennia scientific name of a botanical genus which encompasses Avicennia germinans (the black mangrove); N.L. gen. n. avicenniae of Avicennia, isolated from leaves of Avicennia germinans].
Cells are Gram-negative, motile, non-spore-forming short rods or oval-shaped, 22.6 µm long and 12 µm wide. Colonies are orange, smooth, circular/slightly irregular and convex, with an entire margin. Moderately halophilic, growing at NaCl concentrations in the range 025 % (w/v) with optimum growth at 5 % (w/v) NaCl. Growth occurs at 1240 °C (optimum, 3035 °C) and pH 5.09.0 (optimum, pH 7.08.0). Strictly aerobic. Catalase-positive and gelatin and aesculin are hydrolysed. Production of indole and H2S, hydrolysis of starch, DNA and Tween 80, and urease and oxidase are negative. Nitrate is not reduced. Acid is produced from D-glucose, sucrose, xylose, D-fructose and L-arabinose and weakly produced from maltose. Negative for arginine dihydrolase, ornithine decarboxylase and lysine decarboxylase.
-Galactosidase,
-glucosidase and
-glucosidase activities are present. Negative for
-glucuronidase, N-acetyl-
-glucosaminidase,
-galactosidase,
-maltosidase and L-aspartic acid arylamidase. L-Arabinose, D-cellobiose, D-fructose, D-galactose, D-glucose, maltose, D-mannose and glycerol are used as carbon and energy sources. Shows intermediate resistance to erythromycin (15 µg). Resistant to penicillin (10 units), bacitracin (10 units), cephalothin (30 µg), tetracycline (30 µg), rifampicin (5 µg), streptomycin (10 µg), neomycin (30 µg), kanamycin (30 µg), vancomycin (30 µg), nalidixic acid (30 µg), novobiocin (30 µg) and chloramphenicol (30 µg). Major fatty acids are C16 : 0, C19 : 0 cyclo
8c, C18 : 1
7c and C12 : 0 3-OH. The DNA G+C content of the type strain is 61.5 mol%.
The type strain is MW2aT (=CECT 7193T=CCM 7396T), which was isolated from the leaf surface of Avicennia germinans (black mangrove).
| ACKNOWLEDGEMENTS |
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