IJSEM Track the topics, authors and articles important to you
HOME HELP FEEDBACK SUBSCRIPTIONS ARCHIVE SEARCH TABLE OF CONTENTS
 QUICK SEARCH:   [advanced]


     


This Article
Right arrow Abstract Freely available
Right arrow Full Text (PDF)
Right arrow Supplementary Table
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Right arrow Citation Map
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Download to citation manager
Right arrow reprints & permissions
Citing Articles
Right arrow Citing Articles via HighWire
Right arrow Citing Articles via CrossRef
Right arrow Citing Articles via Google Scholar
Google Scholar
Right arrow Articles by Reddy, G. S. N.
Right arrow Articles by Garcia-Pichel, F.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Reddy, G. S. N.
Right arrow Articles by Garcia-Pichel, F.
Agricola
Right arrow Articles by Reddy, G. S. N.
Right arrow Articles by Garcia-Pichel, F.
Int J Syst Evol Microbiol 57 (2007), 1028-1034; DOI  10.1099/ijs.0.64331-0
© 2007 International Union of Microbiological Societies

Sphingomonas mucosissima sp. nov. and Sphingomonas desiccabilis sp. nov., from biological soil crusts in the Colorado Plateau, USA

G. S. N. Reddy and Ferran Garcia-Pichel

School of Life Sciences, Arizona State University, Main Campus, Tempe, AZ 85287-4501, USA

Correspondence
Ferran Garcia-Pichel
ferran{at}asu.edu


    ABSTRACT
 TOP
 ABSTRACT
 MAIN TEXT
 REFERENCES
 
Two bacterial strains, CP173-2T and CP1DT, were isolated from biological soil crusts (BSCs) collected in the Colorado Plateau, USA. Both strains were pigmented, Gram-negative, non-motile rods and produced abundant mucus. They contained C16 : 0, C18 : 1{omega}7c and C14 : 0 2-OH as the predominant cellular fatty acids, ubiquinone-10 as the isoprenoid quinone and sphingoglycolipid. Based on the above characteristics, the isolates were assigned to the family Sphingomonadaceae; 16 rRNA gene signature nucleotides placed them within the genus Sphingomonas. Strains CP173-2T and CP1DT had a 16S rRNA gene sequence similarity of 96.7 % with each other and 91.6–98.9 % sequence similarity with other species in the genus, indicating that they represent two separate, and possibly novel, species. The closest species to strains CP173-2T and CP1DT were, respectively, Sphingomonas dokdonensis (98.9 % gene sequence similarity) and Sphingomonas panni (97.9 %). However, strain CP173-2T exhibited a DNA–DNA relatedness of only 32.5 % with the type strain of S. dokdonensis. Similarly, the DNA–DNA relatedness between strain CP1DT and the type strain of S. panni was only 18 %. Phenotypic characterization supported this low relatedness. On the basis of this evidence, we propose that the new strains represent two novel species, for which the names Sphingomonas mucosissima sp. nov. (with type strain CP173-2T=ATCC BAA-1239T=DSM 17494T) and Sphingomonas desiccabilis sp. nov. (with type strain CP1DT=ATCC BAA-1041T=DSM 16792T) are proposed.


Abbreviations: BSCs, biological soil crusts

The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequences of strains CP173-2T and CP1DT are AM229669 and AJ871435, respectively.

A supplementary table detailing 16S rRNA gene sequence similarities between strains CP173-2T and CP1DT and other species of the genus Sphingomonas is available in IJSEM Online.


    MAIN TEXT
 TOP
 ABSTRACT
 MAIN TEXT
 REFERENCES
 
Biological soil crusts (BSCs) are formed on the topmost layers of the soil by the entanglement and gluing of mineral particles with micro-organisms and their extracellular polysaccharides (Belnap & Lange, 2001Go). Most BSCs are dominated by cyanobacteria, with Microcoleus vaginatus and Microcoleus steenstrupii being the most common phototrophs in the Western arid lands of North America (Bowker et al., 2002Go; Garcia-Pichel, 2002Go; Gundlapally & Garcia-Pichel, 2006Go; Nagy et al., 2005Go; Yeager et al., 2004Go). The heterotrophic microbial community of BSCs has only begun to be probed in recent years. Culture-dependent and independent studies on BSCs from the Colorado Plateau (Gundlapally & Garcia-Pichel, 2006Go) and the Sonoran desert (Nagy et al., 2005Go) have clearly established the dominance of members of the genera Actinobacteria, Proteobacteria and Bacteriodetes among the bacterial chemoorganoheterotrophs and the widespread dominance of members of the genus Nitrosospira among bacterial ammonia-oxidizing chemoorganoautotrophs (Johnson et al., 2005Go). However, to date, only two descriptions of heterotrophic isolates from BSCs have been published, namely Dyadobacter crusticola (Reddy & Garcia-Pichel, 2005Go) and Belnapia moabensis (Reddy et al., 2006Go). As a contribution to the study of biodiversity in these communities, we describe two additional isolates belonging to the genus Sphingomonas of the class Alphaproteobacteria.

The original genus Sphingomonas, as proposed by Yabuuchi et al. (1990)Go and emended by Takeuchi et al. (1993)Go, was re-evaluated based on phylogenetic analysis, polyamine patterns, fatty acid profiling and nucleotide signature sequences (Pal et al., 2005Go, 2006Go; Takeuchi et al., 2001Go) and is now subdivided into four separate genera: Sphingomonas sensu stricto, Sphingobium, Novosphingobium and Sphingopyxis. Members of the genus Sphingomonas are yellow-pigmented, non-fermentative, Gram-negative, non-motile or motile rods with a single polar flagellum and are characterized by the presence of a unique sphingoglycolipid with the long-chain base dihydrosphingosin, ubiquinone 10 (Q-10), 2-hydroxymyristic acid (2-OH C14 : 0) and the absence of 3-hydroxy fatty acids. Species of the genus Sphingomonas have great potential for biotechnological applications (Denner et al., 2001Go; Pollock, 1993Go).

Strains CP1DT and CP173-2T were isolated from biological soil crust samples collected from sandy arid soils in the Colorado Plateau, USA (38° 38' 557'' N 109° 38' 910'' W and 38° 09' 905'' N 109° 44' 509'' W), as described earlier (Reddy & Garcia-Pichel, 2005Go). Orange (CP173-2T) and yellow (CP1DT) colonies of pigmented bacteria were picked up from BG11-PGY agar-solidified plates, purified by restreaking and maintained on 10x BG11-PGY plates. Morphological, biochemical characteristics and fatty acid methyl esters were analysed according to previously described methods (Reddy & Garcia-Pichel, 2005Go; Reddy et al., 2006Go). Lipids were extracted and analysed as described by Suresh et al. (2004)Go. Quinones were extracted according to the method of Collins et al. (1977)Go and separated by HPLC using the isocratic solvent system methanol/iso-propylether (3 : 1) (Tamaoka et al., 1983Go; Tamaoka, 1986Go). Sphingomonas asaccharolytica ATCC 51839T, Sphingomonas panni DSM 15761T and Sphingomonas dokdonensis DS-4T were used as standards for identifying the lipids and quinones. These strains were also used for DNA–DNA hybridization with the two novel strains using the filter hybridization method described by Pandey et al. (2002)Go. 16S rRNA gene sequencing and phylogenetic analysis were performed as described previously (Kimura, 1980Go; Kumar et al., 2001Go; Reddy & Garcia-Pichel, 2005Go; Thompson et al., 1994Go).

Cells of strains CP173-2T and CP1DT are Gram-negative, rod-shaped (Fig. 1Go), non-motile, mucoid and pigmented and contain C16 : 0, C18 : 1{omega}7c and C14 : 0 2-OH as the major cellular fatty acids, as well as ubiquinone-10 as the isoprenoid quinone. A comparison of the lipid profiles of strains CP1DT and CP173-2T with those of S. asaccharolytica ATCC 51839T indicated that they contain, among other lipids, abundant sphingoglycolipid. These traits would place both novel isolates within the family Sphingomonadaceae. BLAST similarity analysis based on 16S rRNA gene sequences placed both novel strains clearly within the genus Sphingomonas. In addition, their gene sequences contained the signature sequences C-G, G, G, G-C, U-G, U, U, U, U, A, C, G and C at positions 52–359 (based on the Escherichia coli numbering system), 134, 593, 987–1218, 990–1215, 412, 562, 748, 823, 877, 841, 1438 and 1463, respectively, which are characteristic of the genus (Maruyama et al., 2006Go; Takeuchi et al., 2001Go). The two novel strains shared a 16S rRNA gene sequence similarity of 96.7 % (see Supplementary Table S1 in IJSEM Online), confirming that they represent separate species belonging to the genus Sphingomonas (Stackebrandt & Goebel, 1994Go). In addition, strain CP1DT is conspicuously different from strain CP173-2T in that it is yellow-pigmented, whereas strain CP173-2T is orange-pigmented; other differentiating characteristics are listed in Table 1Go.


Figure 1
View larger version (81K):
[in this window]
[in a new window]

 
Fig. 1. Transmission electron micrograph of negatively stained cells of (a) Sphingomonas mucosissima CP173-2T and (b) Sphingomonas desiccabilis CP1DT. Note the extracellular mucus as tenuous shadowing around cells. Bars, 1 µm.

 

View this table:
[in this window]
[in a new window]

 
Table 1. Phenotypic characteristics that differentiate strains CP1DT and CP173-2T from related species of the genus Sphingomonas

Taxa: 1, Sphingomonas desiccabilis sp. nov. CP1DT; 2, S. panni DSM 15761T (data from Busse et al., 2005Go); 3, Sphingomonas mucosissima sp.nov. CP173-2T; 4, S. dokdonensis DS-4T (Yoon et al., 2006Go); 5, S. asaccharolytica Y-345T (Takeuchi et al., 1995Go); 6, Sphingomonas pruni Y-250T (Takeuchi et al., 1995Go); 7, Sphingomonas mali Y-351T (Takeuchi et al., 1995Go); 8, Sphingomonas melonis DSM 14444T (Buonaurio etal., 2002Go); 9, Sphingomonas aquatilis JSS7T (Lee et al., 2001Go); 10, Sphingomonas koreensis JSS26T (Lee et al., 2001Go); 11, Sphingomonas abaci DSM 15867T (Busse et al., 2005Go); 12, Sphingomonas faeni DSM 14747T (Busse et al., 2003Go); 13, Sphingomonas aerolata DSM 14746T (Busse et al., 2003Go); 14, Sphingomonas aurantiaca DSM 14748T (Busse et al., 2003Go); 15, Sphingomonas oligophenolica CIP 107926T (Ohta et al., 2004Go); 16, Sphingomonas echinoides DSM 1805T (Denner et al., 1999Go). Y, Yellow; LY, light yellow; O, orange; V, variable; NG, not grown; ND, not determined; NR, not reported; +, positive; –, negative; (+), weakly positive.

 
Strain CP1DT shared a sequence similarity of 92–97.9 % with other members of the genus Sphingomonas (Supplementary Table S1); its closest relative was S. panni (97.9 % gene sequence similarity). In addition, the topologies of the 16S rRNA gene sequence phylogenetic trees, constructed using the unweighted pair group method with arithmetic mean (UPGMA), neighbour-joining (NJ), maximum-evolution (ME) and DNA parsimony methods, all strongly supported the affiliation of strain CP1DT with S. panni (Busse et al., 2005Go) (Fig. 2Go). However, DNA–DNA hybridization between strain CP1DT and S. panni was only 18 % indicating a clear species separation. This was further confirmed by the phenotypic differences that strain CP1DT exhibited when compared with S. panni (Tables 1 and 2GoGo). The differences between these strains were particularly marked with respect to the fatty acid profiles as strain CP1DT contained higher amounts of C17 : 1{omega}6c and C18 : 1{omega}5c and significantly lower amounts of the major fatty acid C18 : 1{omega}7c. Therefore, based on the above characteristics, strain CP1DT was assigned as the type strain of a novel species, Sphingomonas desiccabilis sp. nov.


Figure 2
View larger version (48K):
[in this window]
[in a new window]

 
Fig. 2. Neighbour-joining tree based on 16S rRNA gene sequences showing the phylogenetic relationship between Sphingomonas mucosissima sp. nov. CP173-2T, Sphingomonas desiccabilis sp. nov. CP1DT and other related micro-organisms.Bootstrap values (expressed as a percentage of 1000 replications) >50 % are given at the nodes. Bar, 0.02 substitutions per nucleotide position.

 

View this table:
[in this window]
[in a new window]

 
Table 2. Comparison of fatty acid contents (%) of strains CP173-2T and CP1DT with other related species of the genus Sphingomonas

Taxa: 1, Sphingomonas mucosissima CP173-2T; 2, S. dokdonensis DS-4T (Yoon et al., 2006Go); 3, Sphingomonas desiccabilis CP1DT; 4, S. panni DSM 15761T (Busse et al., 2005Go); 5, S. asaccharolytica Y-345T (Denner et al., 1999Go); 6, S. pruni Y-250T (Denner et al., 1999Go); 7, S. mali Y-351T (Denner et al., 1999Go); 8, S. melonis DAPP-PG 224T (Buonaurio et al., 2002Go); 9, Sphingomonas aquatilis JSS7T (Lee et al., 2001Go); 10, Sphingomonas koreensis JSS26T (Lee et al., 2001Go); 11, S. abaci DSM 15867T (Busse et al., 2005Go); 12, S. faeni DSM 14747T (Busse et al., 2003Go); 13, S. aerolata DSM 14746T (Busse et al., 2003Go); 14, S. aurantiaca DSM 14748T (Busse et al., 2003Go); 15, S. oligophenolica CIP 107926T (Ohta et al., 2004Go); 16, S. echinoides DSM 1805T (Denner et al., 1999Go). +, Detected; ND, not detected; NR, not reported.

 
Strain CP173-2T showed a 16S rRNA gene sequence similarity of 91.6–98.9 % with other species of the genus Sphingomonas (see Supplementary Table S1). The most similar species, with 98.9 % gene sequence similarity, was S. dokdonensis (Yoon et al., 2006Go), suggesting that strain CP173-2T could be a further strain of S. dokdonensis. Further, the topologies of the phylogenetic trees constructed using different methods suggested a strong affiliation (as supported by the bootstrap values of 88–99 %) of strain CP173-2T to S. dokdonensis (Fig. 2Go). However, low relatedness (32.5 %) in DNA–DNA hybridization experiments between strain CP173-2T and the type strain of S. dokdonensis, indicates that the strains represent separate species. In addition, strain CP173-2T and S. dokdonensis exhibited several phenotypic differences (morphological and biochemical as well as chemotaxonomic; Tables 1 and 2GoGo), further supporting the species separation. Most remarkably, strain CP173-2T is unique when compared to its closest relatives as it gives a negative result in tests for beta-galactosidase and has high proportion of C14 : 0 and C16 : 0 2-OH. Thus, based on the cumulative differences that strain CP173-2T exhibited when compared with the recognized species of the genus Sphingomonas, we suggest that strain CP173-2T represents a novel species, for which the name Sphingomonas mucosissima sp. nov. is proposed.

It appears that the strains CP1DT and CP173-2T could impart some stability to the BSCs they inhabit as they produce very abundant extrapolysaccharides, as evidenced in their mucous appearance in transmission electron micrographs (Fig. 1Go). Given their extreme environment of origin, these strains are likely to be able to withstand repeated and severe desiccation as well as exposure to temperature extremes and solar radiation. This may make them valuable in biotechnology or bioremediation applications tailored to extreme conditions.

Description of Sphingomonas mucosissima sp. nov.
Sphingomonas mucosissima (mu.co.sis'si.ma. L. fem. superlative adj. mucosissima slimiest, referring to the appearance of the strains).

Colonies are orange-pigmented, extremely mucoid, convex, round and smooth. Cells are Gram-negative, non-motile rods of 0.75 µm diameter and 1.7 µm in length. Grows at 15–30 °C, but not at 37 °C, with an optimum growth temperature of 25 °C and a pH of 7. Can tolerate up to 2.5 % NaCl. Cells are positive for catalase, oxidase, phosphatase and do not grow on test media plates of lipase and urease. Negative result in tests for beta-galactosidase, gelatinase, lysine decarboxylase, ornithine decarboxylase, phenylalanine deaminase and arginine dihydrolase activities. Can hydrolyse starch, but not aesculin. Does not reduce nitrate to nitrite and cannot produce H2S gas. Negative results in methyl red, Voges–Proskauer, indole and Simmons' citrate tests. Can utilize acetate, L-arabinose, D-cellobiose, glucose, D-fructose, D-galactose, D-glucose, glycerol, inulin, D-melibiose, pyruvate, D-ribose, sucrose, sorbose, sucrose, D-xylose, L-alanine as sole carbon source but not adonitol, citrate, dulcitol, dextran, ethanolamine, fumaric acid, glucuronic acid, myo-inositol, lactose, lactic acid, D-levulose, D-maltose, D-mannitol, D-mannose, myristic acid, oxalic acid, raffinose, D-rhamnose, L-sorbose, sorbitol, succinate, trehalose, L-arginine, L-aspartic acid, L-aspargine, L-cysteine, L-glycine, L-glutamine, L-glutamic acid, L-histidine, L-leucine, L-lysine, L-methionine, L-phenylalanine and L-proline. Cells are sensitive to (per disc): azithromycin (30 µg), bacitracin (10 U), ceftriaxone (30 µg), chloramphenicol (30 µg), ciprofloxacin (5 µg), doxycycline (30 µg), gentamicin (10 µg), novobiocin (30 µg), rifampicin (30 µg), tetracycline (30 µg) and vancomycin (30 µg), but resistant to aztreonam (30 µg), carbenicillin (100 µg), cephalothin (30 µg), colistin (10 µg), erythromycin (2 µg), ethambutol (50 µg), ethionamide (30 µg), nitrofurantoin (150 µg), penicillin (10 µg), polymyxin B (300 µg), streptomycin (10 µg), sulfisoxazole (300 µg), sulfathiazole (300 µg) and trimethoprim (5 µg). The fatty acids and their contribution to the total fatty acid content are listed in Table 2Go. The major lipids present are phosphatidylglycerol (PG), cardiolipin (DPG), phosphatidyldimethyl ethanolamine (PDE) and sphingoglycolipid (SGL).

The type strain, strain CP173-2T (=ATCC BAA-1239T=DSM 17494T), was isolated from a biological soil crust from the Colorado Plateau, USA.

Description of Sphingomonas desiccabilis sp. nov.
Sphingomonas desiccabilis (de.sic.ca'bi.lis. L. v. desiccare to dry up; L. suffix -abilis adjectival suffix expressing passive qualities; N.L. fem. adj. desiccabilis able to be dried, desiccable).

Colonies are yellow-pigmented, extremely mucoid, convex, round and smooth. Cells are Gram-negative, non-motile, small rods of 0.25 µm in diameter and 0.5 µm in length. Grows at 15–37 °C, with an optimum growth temperature of 25 °C and pH of 7. Can tolerate up to 4 % NaCl. The fatty acids and their contribution to the total fatty acid content are listed in Table 2Go. Major fatty acids and other metabolic characteristics are the same as those for Sphingomonas mucosissima CP173-2T, except the following: tests positive for lipase, gelatinase and beta-galactosidase, negative in tests for urease and can reduce nitrate to nitrite. Can utilize glucuronic acid, D-maltose, D-mannose, raffinose, D-rhamnose and L-proline as sole carbon source, but not acetate, D-fructose, glycerol or L-alanine. Cells are resistant to gentamicin (10 µg/disc).

The type strain, strain CP1DT (=ATCC BAA-1041T=DSM 16792T), was isolated from a biological soil crust from the Colorado Plateau, USA.


    ACKNOWLEDGEMENTS
 
This research was funded by the National Science Foundation Biotic Surveys and Inventories grant 0206711, to F. G-P. We also thank Professor H. J. Busse and Professor J. H. Yoon for kindly providing the type strains of S. panni and S. dokdonensis and Marlene Garcia-Neuer and Kayla Urcheck for nomenclatural suggestions.


    REFERENCES
 TOP
 ABSTRACT
 MAIN TEXT
 REFERENCES
 
Belnap, J. & Lange, O. L. (2001). Biological Soil Crusts: Structure, Function, and Management, Ecological Studies Series, vol. 150. Berlin, Germany: Springer.

Bowker, M. A., Reed, S. C., Belnap, J. & Phillips, S. L. (2002). Temporal variation in community composition, pigmentation, and F(v)/F(m) of desert cyanobacterial soil crusts. Microb Ecol 43, 13–25.[CrossRef][Medline]

Buonaurio, R., Stravato, V. M., Kosako, Y., Fujiwara, N., Naka, T., Kobayashi, K., Cappelli, C. & Yabuuchi, E. (2002). Sphingomonas melonis sp. nov., a novel pathogen that causes brown spots on yellow Spanish melon fruits. Int J Syst Evol Microbiol 52, 2081–2087.[Abstract]

Busse, H. J., Denner, E. B. M., Buczolits, S., Salkinoja-Salonen, M., Bennasar, A. & Kämpfer, P. (2003). Sphingomonas aurantiaca sp. nov., Sphingomonas aerolata sp. nov. and Sphingomonas faeni sp. nov., air- and dustborne and Antarctic, orange-pigmented, psychrotolerant bacteria, and emended description of the genus Sphingomonas. Int J Syst Evol Microbiol 53, 1253–1260.[Abstract/Free Full Text]

Busse, H. J., Hauser, E. & Kämpfer, P. (2005). Description of two novel species, Sphingomonas abaci sp. nov. and Sphingomonas panni sp. nov. Int J Syst Evol Microbiol 55, 2565–2569.[Abstract/Free Full Text]

Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E. (1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221–230.[Abstract/Free Full Text]

Denner, E. B. M., Kämpfer, P., Busse, H.-J. & Moore, E. R. B. (1999). Reclassification of Pseudomonas echinoides Heumann 1962, 343AL, in the genus Sphingomonas as Sphingomonas echinoides comb. nov. Int J Syst Bacteriol 49, 1103–1109.[Abstract/Free Full Text]

Denner, E. B. M., Paukner, S., Kämpfer, P., Moore, E. R. B., Abraham, W. R., Busse, H.-J., Wanner, G. & Lubitz, W. (2001). Sphingomonas pituitosa sp. nov., an exopolysaccharide-producing bacterium that secretes an unusual type of sphingan. Int J Syst Evol Microbiol 51, 827–841.[Abstract]

Garcia-Pichel, F. (2002). Desert environments: biological soil crusts. In Encyclopedia of Environmental Microbiology, pp. 1019–1023. Edited by G. Bitton. New York: Wiley.

Gundlapally, S. R. & Garcia-Pichel, F. (2006). The community and phylogenetic diversity of biological soil crusts in the Colorado Plateau studied by molecular fingerprinting and intensive cultivation. Microbial Ecol 52, 345–357.[CrossRef][Medline]

Johnson, S. L., Budinoff, C. R., Belnap, J. & Garcia-Pichel, F. (2005). Relevance of ammonium oxidation within biological soil crust communities. Environ Microbiol 7, 1–12.[CrossRef][Medline]

Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111–120.[CrossRef][Medline]

Kumar, S., Tamura, K., Jakobsen, I. B. & Nei, M. (2001). MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17, 1244–1245.[Abstract/Free Full Text]

Lee, J. S., Shin, Y. K., Yoon, J. H., Takeuchi, M., Pyun, Y. R. & Park, Y. H. (2001). Sphingomonas aquatilis sp. nov., Sphingomonas koreensis sp. nov. and Sphingomonas taejonensis sp. nov., yellow-pigmented bacteria isolated from natural mineral water. Int J Syst Evol Microbiol 51, 1491–1498.[Abstract]

Maruyama, T., Park, H. D., Ozawa, K., Tanaka, Y., Sumino, T., Hamana, K., Hiraishi, A. & Kato, K. (2006). Sphingosinicella microcystinivorans gen. nov., sp. nov., a microcystin-degrading bacterium. Int J Syst Evol Microbiol 56, 85–89.[Abstract/Free Full Text]

Nagy, M., Pérez, A. & Garcia-Pichel, F. (2005). The prokaryotic diversity of biological soil crusts in the Sonoran Desert (Organ Pipe Cactus National Monument, AZ). FEMS Microbiol Ecol 54, 233–245.[CrossRef][Medline]

Ohta, H., Hattori, R., Ushiba, Y., Mitsui, H., Ito, M., Watanabe, H., Tonosaki, A. & Hattori, T. (2004). Sphingomonas oligophenolica sp. nov., a halo- and organo-sensitive oligotrophic bacterium from paddy soil that degrades phenolic acids at low concentrations. Int J Syst Evol Microbiol 54, 2185–2190.[Abstract/Free Full Text]

Pal, R., Bala, S., Dadhwal, M., Kumar, M., Dhingra, G., Prakash, O., Prabagaran, S. R., Shivaji, S., Cullum, J. & other authors (2005). Hexachlorocyclohexane-degrading bacterial strains Sphingomonas paucimobilis B90A, UT26 and Sp+ having similar lin genes are three distinct species, Sphingobium indicum sp. nov.; Sphingobium japonicum sp. nov. and Sphingobium francense sp. nov. and reclassification of [Sphingomonas] chungbukensis as Sphingobium chungbukense comb. nov. Int J Syst Evol Microbiol 55, 1965–1972.[Abstract/Free Full Text]

Pal, R., Bhasin, V. K. & Lal, R. (2006). Proposal to reclassify [Sphingomonas] xenophaga Stolz et al. 2000 and [Sphingomonas] taejonensis Lee et al. 2001Go as Sphingobium xenophagum comb. nov. and Sphingopyxis taejonensis comb. nov., respectively. Int J Syst Evol Microbiol 56, 667–670.[Abstract/Free Full Text]

Pandey, K. K., Mayilraj, S. & Chakrabarti, T. (2002). Pseudomonas indica sp. nov., a novel butane-utilizing species. Int J Syst Evol Microbiol 52, 1559–1567.[Abstract]

Pollock, T. J. (1993). Gellan-related polysaccharides and the genus Sphingomonas. J Gen Microbiol 139, 1939–1945.[Abstract/Free Full Text]

Reddy, G. S. N. & Garcia-Pichel, F. (2005). Dyadobacter crusticola sp. nov., from biological soil crusts in the Colorado Plateau, USA, and emended description of the genus Dyadobacter Chelius and Tripplett 2000. Int J Syst Evol Microbiol 55, 1295–1299.[Abstract/Free Full Text]

Reddy, G. S. N., Nagy, M. & Garcia-Pichel, F. (2006). Belnapia moabensis gen. nov., sp. nov., an alphaproteobacterium from biological soil crusts in the Colorado Plateau, USA. Int J Syst Evol Microbiol 56, 51–58.[CrossRef][Medline]

Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846–849.[Abstract/Free Full Text]

Suresh, K., Reddy, G. S. N., Sengupta, S. & Shivaji, S. (2004). Deinococcus indicus sp. nov., an arsenic-resistant bacterium from an aquifer in West Bengal, India. Int J Syst Evol Microbiol 54, 457–461.[Abstract/Free Full Text]

Takeuchi, M., Kawai, F., Shimada, Y. & Yokota, A. (1993). Taxonomic study of polyethylene glycol-utilizing bacteria: emended description of the genus Sphingomonas and new descriptions of Sphingomonas macrogoltabidus sp. nov., Sphingomonas sanguis sp. nov. and Sphingomonas terrae sp. nov. Syst Appl Microbiol 16, 227–238.

Takeuchi, M., Sakane, T., Yanagi, M., Yamasato, K., Hamana, K. & Yokota, A. (1995). Taxonomic study of bacteria isolated from plants: proposal of Sphingomonas rosa sp. nov., Sphingomonas pruni sp. nov., Sphingomonas asaccharolytica sp. nov., and Sphingomonas mali sp. nov. Int J Syst Bacteriol 45, 334–341.[Abstract/Free Full Text]

Takeuchi, M., Hamana, K. & Hiraishi, A. (2001). Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analyses. Int J Syst Evol Microbiol 51, 1405–1417.[Abstract]

Tamaoka, J. (1986). Analysis of bacterial menaquinone mixtures by reverse-phase high-performance liquid chromatography. Methods Enzymol 123, 251–256.[Medline]

Tamaoka, J., Katayama-Fujimura, Y. & Kuraishi, H. (1983). Analysis of bacterial menaquinone mixture by high performance liquid chromatography. J Appl Bacteriol 54, 31–36.[CrossRef]

Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673–4680.[Abstract/Free Full Text]

Yabuuchi, E., Yano, I., Oyaizu, H., Hashimoto, Y., Ezaki, T. & Yamamoto, H. (1990). Proposals of Sphingomonas paucimobilis gen. nov. and comb. nov., Sphingomonas parapaucimobilis sp. nov., Sphingomonas yanoikuyae sp. nov., Sphingomonas adhaesiva sp. nov., Sphingomonas capsulata comb. nov., and two genospecies of the genus Sphingomonas. Microbiol Immunol 34, 99–119.[Medline]

Yeager, C. M., Kornosky, J. L., Housman, D. C., Grote, E. E., Belnap, J. & Kuske, C. R. (2004). Diazotrophic community structure and function in two successional stages of biological soil crusts from the Colorado Plateau and Chihuahuan Desert. Appl Environ Microbiol 70, 973–983.[Abstract/Free Full Text]

Yoon, H. J., Lee, M. H., Kang, S. J., Lee, S. Y. & Oh, T. K. (2006). Sphingomonas dokdonensis sp. nov., isolated from soil. Int J Syst Evol Microbiol 56, 2165–2169.[Abstract/Free Full Text]




This article has been cited by other articles:


Home page
Int. J. Syst. Evol. Microbiol.Home page
J.-H. Yoon, S. Park, S.-J. Kang, W. Kim, and T.-K. Oh
Sphingomonas hankookensis sp. nov., isolated from wastewater
Int J Syst Evol Microbiol, November 1, 2009; 59(11): 2788 - 2793.
[Abstract] [Full Text] [PDF]


Home page
Int. J. Syst. Evol. Microbiol.Home page
S. W. Roh, K.-H. Kim, Y.-D. Nam, H.-W. Chang, M.-S. Kim, H.-M. Oh, and J.-W. Bae
Sphingomonas aestuarii sp. nov., isolated from tidal flat sediment
Int J Syst Evol Microbiol, June 1, 2009; 59(6): 1359 - 1363.
[Abstract] [Full Text] [PDF]


Home page
Int. J. Syst. Evol. Microbiol.Home page
L. A. Romanenko, N. Tanaka, G. M. Frolova, and V. V. Mikhailov
Sphingomonas japonica sp. nov., isolated from the marine crustacean Paralithodes camtschatica
Int J Syst Evol Microbiol, May 1, 2009; 59(5): 1179 - 1182.
[Abstract] [Full Text] [PDF]


Home page
Int. J. Syst. Evol. Microbiol.Home page
H.-D. Huang, W. Wang, T. Ma, G.-Q. Li, F.-L. Liang, and R.-L. Liu
Sphingomonas sanxanigenens sp. nov., isolated from soil
Int J Syst Evol Microbiol, April 1, 2009; 59(4): 719 - 723.
[Abstract] [Full Text] [PDF]


Home page
Int. J. Syst. Evol. Microbiol.Home page
G. S. N. Reddy and F. Garcia-Pichel
Description of Patulibacter americanus sp. nov., isolated from biological soil crusts, emended description of the genus Patulibacter Takahashi et al. 2006 and proposal of Solirubrobacterales ord. nov. and Thermoleophilales ord. nov.
Int J Syst Evol Microbiol, January 1, 2009; 59(1): 87 - 94.
[Abstract] [Full Text] [PDF]


Home page
Int. J. Syst. Evol. Microbiol.Home page
J.-H. Yoon, S.-J. Kang, S.-Y. Lee, and T.-K. Oh
Sphingomonas insulae sp. nov., isolated from soil
Int J Syst Evol Microbiol, January 1, 2008; 58(1): 231 - 236.
[Abstract] [Full Text] [PDF]


Home page
Int. J. Syst. Evol. Microbiol.Home page
G. S. N. Reddy, R. M. Potrafka, and F. Garcia-Pichel
Modestobacter versicolor sp. nov., an actinobacterium from biological soil crusts that produces melanins under oligotrophy, with emended descriptions of the genus Modestobacter and Modestobacter multiseptatus Mevs et al. 2000
Int J Syst Evol Microbiol, September 1, 2007; 57(9): 2014 - 2020.
[Abstract] [Full Text] [PDF]


This Article
Right arrow Abstract Freely available
Right arrow Full Text (PDF)
Right arrow Supplementary Table
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Right arrow Citation Map
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Download to citation manager
Right arrow reprints & permissions
Citing Articles
Right arrow Citing Articles via HighWire
Right arrow Citing Articles via CrossRef
Right arrow Citing Articles via Google Scholar
Google Scholar
Right arrow Articles by Reddy, G. S. N.
Right arrow Articles by Garcia-Pichel, F.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Reddy, G. S. N.
Right arrow Articles by Garcia-Pichel, F.
Agricola
Right arrow Articles by Reddy, G. S. N.
Right arrow Articles by Garcia-Pichel, F.


HOME HELP FEEDBACK SUBSCRIPTIONS ARCHIVE SEARCH TABLE OF CONTENTS
INT J SYST EVOL MICROBIOL MICROBIOLOGY J GEN VIROL
J MED MICROBIOL ALL SGM JOURNALS