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1 School of Biological Sciences and Institute of Microbiology, Seoul National University, 56-1 Shillim-dong, Kwanak-gu, Seoul 151-742, Republic of Korea
2 Department of Biology, College of Natural Sciences, Sunchon National University, Sunchon 540-742, Republic of Korea
3 Korean Collection for Type Cultures, Korea Research Institute of Bioscience and Biotechnology, Taejon 305-600, Republic of Korea
Correspondence
Jongsik Chun
jchun{at}snu.ac.kr
| ABSTRACT |
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7c and C18 : 1
7c). The predominant respiratory lipoquinone was Q-8. The DNA G+C content was 44 mol%. The phenotypic features of strain FR1199T were similar to those of Photobacterium damselae subsp. damselae and Photobacterium damselae subsp. piscicida, but several physiological and chemotaxonomic properties readily distinguish the new isolate from them. On the basis of the polyphasic results revealed in this study, FR1311T is considered to be the type strain of a novel species, for which the name Photobacterium ganghwense sp. nov. is proposed. The type strain is FR1311T (=IMSNU 60287T=KCTC 12328T=JCM 12487T).
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain FR1311T is AY960847.
A transmission electron micrograph of a negatively stained cell of strain FR1311T is available as supplementary material in IJSEM Online.
| MAIN TEXT |
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A sample was collected in coastal surface sea water from Ganghwa Island, South Korea (37° 35' 39·1'' N 126° 27' 24·5'' E). The sample was diluted with sterilized artificial sea water (ASW; Lyman & Fleming, 1940
), spread onto a plate containing marine agar 2216 (MA) (Becton Dickinson) and incubated at 25 °C for 3 weeks. The isolate was routinely cultured on MA and maintained as a glycerol suspension (20 %, w/v) at 80 °C.
The 16S rRNA gene sequence of this strain, designated FR1311T, was determined using universal primers (Lane, 1991
) as described by Chun & Goodfellow (1995)
, and an almost complete sequence was obtained (1462 bp). Phylogenetic analyses were performed using the FitchMargoliash (Fitch & Margoliash, 1967
), maximum-likelihood (Felsenstein, 1993
), maximum-parsimony (Fitch, 1971
) and neighbour-joining (Saitou & Nei, 1987
) methods. Evolutionary distance matrices were generated according to Jukes & Cantor (1969)
. The topology of the resultant neighbour-joining tree was evaluated by bootstrap analyses (Felsenstein, 1985
) based on 1000 resamplings. Alignment and phylogenetic analyses were carried out using the jPHYDIT program (available at http://chunlab.snu.ac.kr/jphydit/) and PAUP 4.0 (Swofford, 1998
) as described by Chun et al. (2000)
.
Preliminary sequence comparison with 16S rRNA gene sequences held in GenBank indicated that the new isolate belongs within the genus Photobacterium. The newly determined sequence was then aligned manually against representatives of the family Vibrionaceae using bacterial 16S rRNA gene secondary structure information. Domains used to construct the phylogenetic trees were the regions available for all sequences (positions 851417; Escherichia coli numbering system). On the basis of 16S rRNA gene sequence similarity, the closest cultured bacterial relatives were the type strains of recognized Photobacterium species (95·592·7 %) and Vibrio species (92·791·1 %). Strain FR1131T showed highest 16S rRNA gene sequence similarity to P. damselae subsp. damselae ATCC 33539T (95·5 %), followed by P. damselae subsp. piscicida NCIMB 2058T (95·4 %), P. rosenbergii LMG 22223T (94·9 %) and P. leiognathi ATCC 25521T (94·4 %). These values are well below the cut-off value of 97 % suggested for bacterial species definition (Stackebrandt & Goebel, 1994
). As shown in the neighbour-joining phylogenetic tree (Fig. 1
), strain FR1311T formed a distinct phyletic subline within the genus Photobacterium; this relationship was confirmed using the other tree-making algorithms. On the basis of pairwise 16S rRNA gene sequence similarity and phylogenetic analysis, it is clear that the new isolate represents a novel species in the genus Photobacterium.
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-hydroxybutyrate was determined by the Sudan black staining method (Smibert & Krieg, 1994
Strain FR1311T was halophilic; it required 17 % (w/v) NaCl for growth (optimum 2 %) and was unable to grow on ZoBell medium without NaCl. Results of the biochemical and physiological tests are given in the species description and in Table 1
. Strain FR1311T had an unsaturated ubiquinone with eight isoprene units (Q-8), in agreement with previous findings that photobacteria contain Q-8 as the predominant respiratory lipoquinone (Nogi et al., 1998
). Strain FR1311T had large amounts of straight-chain and unsaturated fatty acids: the major components were C16 : 0 (21 %), C14 : 0 (3·6 %), C12 : 0 (3·4 %), C18 : 1
7c (29·6 %), C12 : 0 3-OH (2·1 %), C16 : 1
7c and/or iso-C15 : 0 2-OH (27·8 %) and C14 : 0 3-OH and/or iso-C16 : 1 (2·7 %). This fatty acid profile is similar to those of recognized Photobacterium species (Nogi et al., 1998
).
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Description of Photobacterium ganghwense sp. nov.
Photobacterium ganghwense (gang.hwen'se. N.L. neut. adj. ganghwense pertaining to Ganghwa Island, Korea, the geographical origin of the type strain of the species).
Gram-negative, oxidase- and catalase-positive and facultatively anaerobic. Colonies on MA are circular, smooth, convex with entire margins, slightly cream-coloured and approximately 3 mm in diameter after 3 days at 30 °C. Cells are motile by means of a polar flagellum (see Supplementary Fig. S1 in IJSEM Online), are oval or rod-shaped and 0·81·2x1·32·0 µm in size. Spores are not formed. Growth occurs in 17 % (w/v) NaCl (optimum 2 %). Growth occurs at pH 511 (optimum pH 89) and at 1045 °C (optimum 35 °C). Bioluminescence is observed. No gas is produced from D-glucose under aerobic conditions. Growth occurs on thiosulfate/citrate/bile salts/sucrose medium (TCBS agar; Oxoid), producing green colonies. Acid is formed from glucose. Does not produce ornithine decarboxylase, urease or tryptophan deaminase. Does not hydrolyse aesculin. Positive for fermentation of glucose, D-inositol and amygdalin. Positive for assimilation of glucose, mannitol, N-acetyl-D-glucosamine, gluconate, malate, citrate and phenylacetate. Mannose, caprate and adipate are weakly utilized. Produces alkaline phosphatase, esterase (C4), esterase lipase (C8), leucine arylamidase, acid phosphatase, naphthol-AS-BI-phosphohydrolase and
-glucosidase, but not lipase (C14), valine arylamidase, cystine arylamidase, trypsin,
-chymotrypsin,
-galactosidase,
-galactosidase,
-glucuronidase,
-glucosidase, N-acetyl-
-glucosaminidase,
-mannosidase or
-fucosidase. Other physiological and biochemical characteristics are given in Table 1
. Major fatty acids are C18 : 1
7c (29·6 %), C16 : 1
7c and/or iso-C15 : 0 2-OH (27·8 %) and C16 : 0 (21·1 %). The DNA G+C content is 44 mol%.
The type strain, FR1311T (=IMSNU 60287T=KCTC 12328T=JCM 12487T), was isolated from sea water from Ganghwa Island, South Korea.
| ACKNOWLEDGEMENTS |
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