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Int J Syst Evol Microbiol 56 (2006), 2871-2877; DOI  10.1099/ijs.0.64562-0
© 2006 International Union of Microbiological Societies

Shewanella irciniae sp. nov., a novel member of the family Shewanellaceae, isolated from the marine sponge Ircinia dendroides in the Bay of Villefranche, Mediterranean Sea

On On Lee1, Stanley C. K. Lau2, Mandy M. Y. Tsoi1, Xiancui Li1, Ioulia Plakhotnikova1, Sergey Dobretsov1, Madeline C. S. Wu1, Po-Keung Wong3, Markus Weinbauer4 and Pei-Yuan Qian1

1 Coastal Marine Laboratory/Department of Biology, The Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong SAR, People's Republic of China
2 Division of Environmental Science and Engineering, The National University of Singapore, Singapore
3 Department of Biology, The Chinese University of Hong Kong, Shatin, N. T., Hong Kong SAR, People's Republic of China
4 Microbial Ecology and Biogeochemistry Group, Laboratoire d'Océanographie de Villefranche-sur-Mer, Villefranche-sur-Mer, France

Correspondence
Pei-Yuan Qian
boqianpy{at}ust.hk


    ABSTRACT
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 ABSTRACT
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Strain UST040317-058T, comprising non-pigmented, rod-shaped, facultatively anaerobic, Gram-negative cells that are motile by means of single polar flagella, was isolated from the surface of a marine sponge (Ircinia dendroides) collected from the Mediterranean Sea. Comparative 16S rRNA gene sequence-based phylogenetic analysis placed the strain in a separate cluster with the recognized bacterium Shewanella algae IAM 14159T, with which it showed a sequence similarity of 95.0 %. The sequence similarity between strain UST040317-058T and its other (six) closest relatives ranged from 91.6 to 93.8 %. Strain UST040317-058T showed oxidase, catalase and gelatinase activities. The typical respiratory quinones for shewanellas, menaquinone MK-7 and ubiquinones Q-7 and Q-8, were also detected. The predominant fatty acids in strain UST040317-058T were i15 : 0, 16 : 0, 17 : 1{omega}8c and summed feature 3 (comprising i15 : 0 2-OH and/or 16 : 1{omega}7c), altogether representing 56.9 % of the total. The DNA G+C content was 39.9 mol%. The strain could be differentiated from other Shewanella species by its inability to reduce nitrate or produce H2S and by 10–22 additional phenotypic characteristics. On the basis of the phylogenetic and phenotypic data presented in this study, strain UST040317-058T represents a novel species in the genus Shewanella, for which the name Shewanella irciniae sp. nov. is proposed. The type strain is UST040317-058T (=JCM 13528T=NRRL B-41466T).


The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain UST040317-058T is DQ180743.

A scanning electron micrograph of cells of strain UST040317-058T is available as a supplementary figure in IJSEM Online.


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The family Shewanellaceae was established from the emended description of a group of marine Alteromonas-like bacteria because of their deep phylogenetic branching and lack of association with any other genus in the family Alteromonadaceae (Ivanova et al., 2004cGo). At present, the family Shewanellaceae includes only one genus, Shewanella (MacDonell & Colwell, 1985Go), which was created from the reclassification of two species previously assigned to the genus Alteromonas, namely [Alteromonas] putrefaciens (Lee et al., 1981Go) and [Alteromonas] hanedai (Jensen et al., 1980Go). Shewanella species comprise Gram-negative, straight or curved rod-shaped, aerobic or facultatively anaerobic and readily cultivated gammaproteobacteria isolated from diverse sources, including activated sludge (Xu et al., 2005Go), marine invertebrates (Ivanova et al., 2004bGo), red algae (Simidu et al., 1990Go), a tidal flat (Yoon et al., 2004aGo), seawater (Ivanova et al., 2001Go, 2004aGo; Yoon et al., 2004bGo), sediments (Venkateswaran et al., 1998Go) and clinical samples (Levin, 1972Go; Debois et al., 1975Go; Holmes et al., 1975Go). In the last decade, the number of recognized species in this genus has increased; they have been studied extensively because of their capacity for dissimilatory reduction of manganese and iron oxides (Myers & Nealson, 1988Go; Bowman et al., 1997Go; Venkateswaran et al., 1998Go), for co-metabolization of halogenated organic pollutants (Petrovskis et al., 1994Go), for the destructive souring of crude petroleum (Semple & Westlake, 1987Go) and for the production of tetrodotoxin (Simidu et al., 1990Go) and large proportions of polyunsaturated fatty acids (Bowman et al., 1997Go; Russell & Nichols, 1999Go; Ivanova et al., 2004aGo). At the time of writing, there are more than 30 Shewanella species with validly published names. On the basis of the polyphasic taxonomic data presented in this study, we propose a novel member of this genus, strain UST040317-058T, isolated in March 2004 from the surface of a marine sponge (Ircinia dendroides) found associated with sea-grass (Posidonia) in the Bay of Villefranche in the Mediterranean Sea.

Strain UST040317-058T was isolated using a standard dilution plating technique on a marine agar medium containing 3 g yeast extract (Oxoid), 5 g peptone (Oxoid) and 12 g bacteriological agar (Oxoid) in 1 l 0.22 µm-filtered seawater at 32 {per thousand} salinity after 48 h incubation at 28 °C. Unless otherwise indicated, all characteristics described hereafter are based on cultures grown on marine agar under these conditions. Colonies of strain UST040317-058T were milky, raised and circular (0.8–1.5 mm in diameter) with entire edges and a smooth surface (as observed under a Leica MZ6 light microscope at 40x magnification). Gram stain was determined using light microscopy according to Smibert & Krieg (1994)Go. Cell morphology was examined using scanning electron microscopy (6700F; JEOL) according to Neu et al. (2001)Go and the presence of flagella was determined by transmission electron microscopy according to Allan et al. (2002)Go. Gliding motility was observed under a phase-contrast light microscope (BX51; Olympus) at 100x magnification using cells grown on quarter-strength marine broth 2216 (Oxoid) solidified with 1.2 % agar according to Bowman (2000)Go. Strain UST040317-058T comprised Gram-negative, rod-shaped cells that were motile by means of a single polar flagellum (see Supplementary Fig. S1 available in IJSEM Online).

The almost-complete 16S rRNA gene sequence of strain UST040317-058T (1462 bp) was obtained bidirectionally with three replicates, as described by Lau et al. (2004)Go. Comparative analysis of the 16S rRNA gene sequence with sequences deposited in GenBank using BLAST indicated that the strain belonged to the family Shewanellaceae and showed the highest sequence similarity (95.0 %) with Shewanella algae IAM 14159T (Simidu et al., 1990Go). The 16S rRNA gene sequence was automatically, and then manually, aligned with a database of >30 000 previously aligned 16S rRNA gene sequences by using the ARB software package (Ludwig et al., 2004Go). Phylogenetic trees were constructed using three different methods: neighbour-joining, maximum-likelihood and maximum-parsimony. The neighbour-joining phylogenetic tree (Fig. 1Go) placed strain UST040317-058T within a cluster of two undescribed bacteria which were also isolated from marine sponges: an unidentified sponge bacterium, strain Ex6 (Wichels et al., 2006Go), and Shewanella species strain HJ039 (GenBank accession no. DQ167234). This cluster, together with the recognized species S. algae IAM 14159T, formed a distinct clade that clustered robustly with another clade comprising six other Shewanella species with validly published names, including Shewanella amazonensis SB2BT (Venkateswaran et al., 1998Go), Shewanella waksmanii KMM 3823T (Ivanova et al., 2003Go), Shewanella aquimarina SW-120T (Yoon et al., 2004bGo), Shewanella marisflavi SW-117T (Yoon et al., 2004bGo), Shewanella colwelliana ATCC 39565T (Coyne et al., 1989Go) and Shewanella affinis KMM 3587T (Ivanova et al., 2004bGo). These species shared 91.6–93.8 % 16S rRNA gene sequence similarity with strain UST040317-058T. The maximum-likelihood and maximum-parsimony trees based on cladistic methods (i.e. character-based) showed similar topography for the novel strain and the Shewanella species. These results support the inclusion of UST040317-058T as a novel species in the genus Shewanella.


Figure 1
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Fig. 1. Neighbour-joining tree, based on 16S rRNA gene sequence comparisons, showing the estimated phylogenetic relationships between UST040317-058T and related species. Strains belonging to the genera Vibrio and Aeromonas were chosen as the outgroups. Asterisks indicate nodes that are also found in the maximum-parsimony tree; bold lines indicate branches that are also found in the maximum-likelihood tree. Bootstrap values greater than 50 %, expressed as a percentage of 500 replicates, are shown at the nodes. GenBank accession numbers are shown in parentheses. Bar, 1 nucleotide substitution per 100 nucleotides.

 
The cellular fatty acid profile of strain UST040317-058T was determined using the Sherlock Microbial Identification System (MIDI) according to the manufacturer's protocol. Strain UST040317-058T had a cellular fatty acid profile dominated by the saturated straight-chain fatty acid 16 : 0 (13.0 %), the saturated branched-chain fatty acid i15 : 0 (14.1 %), the unsaturated straight-chain fatty acid 17 : 1{omega}8c (13.3 %) and summed feature 3 (comprising i15 : 0 2-OH and/or 16 : 1{omega}7c) (16.5 %), which together constituted 56.9 % of the total fatty acid content (Table 1Go). These fatty acids are common to Shewanella species, supporting the inclusion of strain UST040317-058T in the genus. However, some fatty acids that were common in some Shewanella species, e.g. 15 : 0, 16 : 1{omega}7c (Table 1Go) and polyunsaturated fatty acids (Bowman et al., 1997Go; Skerratt et al., 2002Go; Ivanova et al., 2004aGo), were not observed in strain UST040317-058T, suggesting that this novel isolate is unique.


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Table 1. Cellular fatty acid content of strain UST040317-058T and its close relatives in the genus Shewanella

Strains: 1, UST040317-058T; 2, S. algae IAM 14159T (data from Simidu et al., 1990Go); 3, S. amazonensis SB2BT (Venkateswaran et al., 1998Go); 4, S. waksmanii KMM 3823T (Ivanova et al., 2003Go); 5, S. aquimarina SW-120T (Yoon et al., 2004bGo); 6, S. marisflavi SW-117T (Yoon et al., 2004bGo); 7, S. colwelliana ATCC 39565T (Coyne et al., 1989Go); 8, S. affinis KMM 3587T (Ivanova et al., 2004bGo). Values given are mean percentages of the total fatty acid content. The prefixes ‘i’ and ‘a’ indicate iso-branched and anteiso-branched fatty acids, respectively. Fatty acids representing <0.2 % in all rows have been excluded. –, Not detected.

 
The DNA G+C content of UST040317-058T was 40.0±0.1 mol% (n=3) as determined using an HPLC method according to Mesbah et al. (1989)Go. This value is within the range of G+C contents observed among members of the genus Shewanella (39.0–54.0 mol%) (Table 2Go). The presence of respiratory quinones was checked using an HPLC method according to Collins (1994)Go. Menaquinones extracted from Cellulophaga lytica (Nakagawa & Yamasato, 1993Go) and Pedobacter heparinus (Steyn et al., 1998Go) served as references for MK-6 and MK-7, respectively, while ubiquinones extracted from Escherichia coli strain XL1-Blue (Gao et al., 2004Go) served as references for Q-7 and Q-8. MK-7, Q-7 and Q-8, but not MK-6, were detected in strain UST040317-058T.


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Table 2. Phenotypic characteristics that differentiate strain UST040317-058T from the seven most closely related members of the genus Shewanella

Strains: 1, UST040317-058T; 2, S. algae IAM 14159T (data from Simidu et al., 1990Go); 3, S. amazonensis SB2BT (Venkateswaran et al., 1998Go); 4, S. waksmanii KMM 3823T (Ivanova et al., 2003Go); 5, S. aquimarina SW-120T (Yoon et al., 2004bGo); 6, S. marisflavi SW-117T (Yoon et al., 2004bGo); 7, S. colwelliana ATCC 39565T (Coyne et al., 1989Go); 8, S. affinis KMM 3587T (Ivanova et al., 2004bGo). All strains are straight rods, Gram-negative, facultatively anaerobic and motile by means of a single polar flagellum. All are positive for haemolytic activity and the production of gelatinase, oxidase and catalase. All are negative for the production of arginine dihydrolase, lysine decarboxylase, ornithine decarboxylase and indole and for the utilization of lactose. +, Positive; –, negative; ND, not determined.

 
The oxygen requirement for growth was investigated using the Oxoid Anaerobic System. Growth at different temperatures (4, 12, 20, 28, 36, 44 and 52 °C) and pH (5, 6, 7, 8, 9 and 10) was monitored on marine agar incubated for up to 10 days. The NaCl requirement for growth was tested on a 1.2 % agar medium containing 5 g peptone, 5 g MgCl2, 2 g MgSO4, 1 g KCl, 0.5 g CaCl2 and different amounts of NaCl (from 0 up to 180 g) and the pH was adjusted to 7.5 using KOH (Isnansetyo & Kamei, 2003Go). Haemolytic activity was studied on blood agar containing 40 g blood agar base (Oxoid), 50 ml rabbit blood and 950 ml 0.22 µm-filtered seawater (Ivanova et al., 2004bGo). Susceptibility to the antibiotics streptomycin, benzylpenicillin, chloramphenicol, ampicillin, tetracycline and kanamycin was tested using standard agar disc diffusion assays according to Acar (1980)Go. The amounts of antibiotic tested ranged from 1.0 to 100.0 µg per disc. The hydrolysis of casein and cellulose was investigated according to Norris et al. (1985)Go and Bowman (2000)Go, respectively. The hydrolysis of Tweens 20, 40 and 80 and of chitin was tested as described in Baumann & Baumann (1981)Go. The hydrolysis of agar, DNA and starch and the production of oxidase and catalase were determined according to Smibert & Krieg (1994)Go. Other enzymic activities, the utilization of (and acid production from) different carbon sources, the reduction of nitrate and the production of H2S, indole and acetoin were tested using the commercial systems API 20E, API 20NE, API 50 CH, API ZYM (bioMérieux) and MicroLog 3 (Biolog) according to the manufacturers' manuals, except that the cells used for the API system were suspended in sterile seawater at 22 {per thousand} salinity before inoculation (MacDonell et al., 1982Go). Growth on glycerol, D-glucose, sucrose, D-mannitol, D-galactose, starch, D-sorbitol, D-arabinose and D-melibiose as sole carbon sources was also tested on a 1.2 % agar medium containing 0.2 g NaNO3, 0.2 g NH4Cl, 0.05 g yeast extract and 4 % (w/v) carbon source in 1 l seawater at 35 {per thousand} salinity (Nedashkovskaya et al., 2003Go). Detailed physiological and biochemical characteristics of UST040317-058T are given in the species description below.

Strain UST040317-058T can be differentiated from its closest relative, S. algae IAM 14159T, by means of several phenotypic characteristics, including the inability of the novel strain to reduce nitrate, produce H2S, grow at 8 % NaCl and 40 °C, produce lipase or utilize D-maltose, DL-lactate, DL-malate, succinate, fumarate and L-serine and its ability to utilize D-galactose, D-glucose, D-mannitol and D-sorbitol as sole carbon sources. The novel strain is differentiated from other selected Shewanella species in Table 2Go. On the basis of the phylogenetic evidence together with the phenotypic characteristics presented in this study, strain UST040317-058T represents a novel species within the genus Shewanella, for which the name Shewanella irciniae sp. nov. is proposed.

Description of Shewanella irciniae sp. nov.
Shewanella irciniae (ir.ci'ni.ae. N.L. gen. n. irciniae of/from Ircinia, isolated from the marine sponge Ircinia dendroides).

Cells are Gram-negative, short, straight rods (1.3–2.0 µm in length and 0.5 µm in width) and are motile by means of a single polar flagellum. Facultatively anaerobic. When cultivated on marine agar at 28 °C for 48 h, colonies are milky, 0.8–1.5 mm in diameter, circular and raised with a smooth surface and an entire edge. Does not produce diffusible pigments. Optimal growth occurs at 20–28 °C, but no growth occurs at temperatures lower than 12 °C or higher than 36 °C. Growth occurs at pH 6–10, but no growth occurs at or below pH 5. Requires NaCl (2.0–6.0 %; optimum, 2.0–4.0 %) for growth. MK-7, Q-7 and Q-8 are the predominant respiratory quinones detected. The predominant fatty acids are i15 : 0, 16 : 0, 17 : 1{omega}8c and summed feature 3 (comprising i15 : 0 2-OH and/or 16 : 1{omega}7c), together constituting 56.9 % of the total. Susceptible to 1.0 µg benzylpenicillin, 1.0 µg chloramphenicol, 1.0 µg ampicillin, 10.0 µg tetracycline and 100.0 µg streptomycin, but resistant to kanamycin (up to 100.0 µg tested). Gelatin is hydrolysed, but casein, agar, starch, chitin, cellulose and Tweens 20, 40 and 80 are not. Acetoin, indole and H2S are not produced. Nitrate is not reduced. Citrate is not utilized. Positive for haemolytic activity, DNase, oxidase, catalase, alkaline phosphatase, esterase (C4), esterase lipase (C8), leucine arylamidase, valine arylamidase, acid phosphatase, naphthol-AS-BI-phosphohydrolase and {alpha}-fucosidase. Negative for urease, lipase (C14), cystine arylamidase, trypsin, {alpha}-chymotrypsin, {alpha}- and beta-galactosidases, beta-glucuronidase, {alpha}- and beta-glucosidases, N-acetyl-beta-glucosaminidase, {alpha}-mannosidase, arginine dihydrolase, lysine decarboxylase, ornithine decarboxylase and tryptophan deaminase. Utilizes glycerol, D-glucose, sucrose, D-mannitol, D-galactose, starch, D-sorbitol, D-arabinose and D-melibiose as sole carbon sources on agar medium supplemented with 4 % (w/v) carbon source. Utilizes D-glucose, L-arabinose, aesculin ferric citrate and potassium 2-ketogluconate in the API 50 CH and 20NE systems. Utilizes {alpha}- and beta-hydroxybutyric acids, methyl pyruvate and D-psicose in the MicroLog 3 system. Other carbon sources included in the MicroLog 3, API 20NE and 50 CH systems are not utilized. No acid production is observed from the carbon sources in the API 50 CH and 20E systems.

The type strain, UST040317-058T (=JCM 13528T=NRRL B-41466T), was isolated from the surface of a marine sponge (Ircinia dendroides) associated with Posidonia sea-grass in the Bay of Villefranche, Mediterranean Sea.


    ACKNOWLEDGEMENTS
 
The authors thank Professor Hans G. Trüper (University of Bonn, Germany) and Professor Jean Euzéby (École Nationale Vétérinaire, France) for generous help with the Latin etymology, and Mr Ken Lau for respiratory quinone analysis. This work was supported by grants from the Research Grants Council (CA04/05.Sc01 and F-HK19/03T-II) to P. Y. Q.


    REFERENCES
 TOP
 ABSTRACT
 MAIN TEXT
 REFERENCES
 
Acar, J. F. (1980). The disc susceptibility test. In Antibiotics in Laboratory and Medicine, pp. 24–54. Edited by V. Lorian. Baltimore: Williams & Wilkins.

Allan, V. J. M., Callow, M. E., Macaskie, L. E. & Paterson-Beedle, M. (2002). Effect of nutrient limitation on biofilm formation and phosphatase activity of a Citrobacter sp. Microbiology 148, 277–288.[Abstract/Free Full Text]

Baumann, P. & Baumann, L. (1981). The marine gram-negative eubacteria: genera Photobacterium, Beneckea, Alteromonas, Pseudomonas and Alcaligenes. In The Prokaryotes, vol. 1, pp. 1302–1331. Edited by M. P. Starr, H. Stolp, H. G. Trüper, A. Balows & H. Schlegel. Berlin: Springer.

Bowman, J. P. (2000). Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov. Int J Syst Evol Microbiol 50, 1861–1868.[Abstract]

Bowman, J. P., McCammon, S. A., Nichols, D. S., Skerratt, J. H., Rea, S. M., Nichols, P. D. & McMeekin, T. A. (1997). Shewanella gelidimarina sp. nov. and Shewanella frigidimarina sp. nov., novel Antarctic species with the ability to produce eicosapentaenoic acid (20 : 5{omega}3) and grow anaerobically by dissimilatory Fe(III) reduction. Int J Syst Bacteriol 47, 1040–1047.[Abstract/Free Full Text]

Collins, M. D. (1994). Isoprenoid quinones. In Chemical Methods in Prokaryotic Systematics, pp. 265–310. Edited by M. Goodfellow & A. G. O'Donnell. Chichester: Wiley.

Coyne, V. E., Pillidge, C. J., Sledjeski, D. D., Hori, H., Ortiz-Conde, B. A., Muir, D. G., Weiner, R. M. & Colwell, R. R. (1989). Reclassification of Alteromonas colwelliana to the genus Shewanella by DNA-DNA hybridization, serology and 5S ribosomal RNA sequence data. Syst Appl Microbiol 12, 275–279.

Debois, J., Degreef, H., Vandepitte, J. & Spaepen, J. (1975). Pseudomonas putrefaciens as a cause of infection in humans. J Clin Pathol 28, 993–996.[Abstract/Free Full Text]

Gao, M., Liu, H., Yang, M., Hu, J. & Shao, B. (2004). Indirect identification of isoprenoid quinones in Escherichia coli by LC-MS with atmospheric pressure chemical ionization in negative mode. J Basic Microbiol 44, 424–429.[CrossRef][Medline]

Holmes, B., Lapage, S. P. & Malnick, H. (1975). Strains of Pseudomonas putrefaciens from clinical material. J Clin Pathol 28, 149–155.[Abstract/Free Full Text]

Isnansetyo, A. & Kamei, Y. (2003). Pseudoalteromonas phenolica sp. nov., a novel marine bacterium that produces phenolic anti-methicillin-resistant Staphylococcus aureus substances. Int J Syst Evol Microbiol 53, 583–588.[Abstract/Free Full Text]

Ivanova, E. P., Sawabe, T., Gorshkova, N. M., Svetashev, V. I., Mikhailov, V. V., Nicolau, D. V. & Christen, R. (2001). Shewanella japonica sp. nov. Int J Syst Evol Microbiol 51, 1027–1033.[Abstract]

Ivanova, E. P., Nedashkovskaya, O. I., Zhukova, N. V., Nicolau, D. V., Christen, R. & Mikhailov, V. V. (2003). Shewanella waksmanii sp. nov., isolated from a sipuncula (Phascolosoma japonicum). Int J Syst Evol Microbiol 53, 1471–1477.[Abstract/Free Full Text]

Ivanova, E. P., Gorshkova, N. M., Bowman, J. P., Lysenko, A. M., Zhukova, N. V., Sergeev, A. F., Mikhailov, V. V. & Nicolau, D. V. (2004a). Shewanella pacifica sp. nov., a polyunsaturated fatty acid-producing bacterium isolated from sea water. Int J Syst Evol Microbiol 54, 1083–1087.[Abstract/Free Full Text]

Ivanova, E. P., Nedashkovskaya, O. I., Sawabe, T., Zhukova, N. V., Frolova, G. M., Nicolau, D. V., Mikhailov, V. V. & Bowman, J. P. (2004b). Shewanella affinis sp. nov., isolated from marine invertebrates. Int J Syst Evol Microbiol 54, 1089–1093.[Abstract/Free Full Text]

Ivanova, E. P., Flavier, S. & Christen, R. (2004c). Phylogenetic relationships among marine Alteromonas-like proteobacteria: emended description of the family Alteromonadaceae and proposal of Pseudoalteromonadaceae fam. nov., Colwelliaceae fam. nov., Shewanellaceae fam. nov., Moritellaceae fam. nov., Ferrimonadaceae fam. nov., Idiomarinaceae fam. nov. and Psychromonadaceae fam. nov. Int J Syst Evol Microbiol 54, 1773–1788.[Abstract/Free Full Text]

Jensen, M. J., Tebo, B. M., Baumann, P., Mandel, M. & Nealson, K. H. (1980). Characterization of Alteromonas hanehai (sp. nov.), a nonfermentative luminous species of marine origin. Curr Microbiol 3, 311–315.[CrossRef]

Lau, S. C. K., Tsoi, M. M. Y., Li, X., Plakhotnikova, I., Wu, M., Wong, P. K. & Qian, P. Y. (2004). Loktanella hongkongensis sp. nov., a novel member of the {alpha}-Proteobacteria originating from marine biofilms in Hong Kong waters. Int J Syst Evol Microbiol 54, 2281–2284.[Abstract/Free Full Text]

Lee, J. V., Gibson, D. M. & Shewan, J. M. (1981). Alteromonas putrefaciens sp. nov. In Validation of the Publication of New Names and New Combinations Previously Effectively Published Outside the IJSB, List no. 6. Int J Syst Bacteriol 31, 215–218.[Free Full Text]

Levin, R. E. (1972). Correlation of DNA base composition and metabolism of Pseudomonas putrefaciens isolates from food, human clinical specimens, and other sources. Antonie van Leeuwenhoek 38, 121–127.[CrossRef][Medline]

Ludwig, W., Strunk, O., Westram, R. & 29 other authors (2004). ARB: a software environment for sequence data. Nucleic Acids Res 32, 1363–1371.[Abstract/Free Full Text]

MacDonell, M. T. & Colwell, R. R. (1985). Phylogeny of the Vibrionaceae, and recommendation for two new genera, Listonella and Shewanella. Syst Appl Microbiol 6, 171–182.

MacDonell, M. T., Singleton, F. L. & Hood, M. A. (1982). Diluent composition for use of API 20E in characterizing marine and estuarine bacteria. Appl Environ Microbiol 44, 423–427.[Abstract/Free Full Text]

Mesbah, M., Premachandran, U. & Whitman, W. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159–167.

Myers, C. R. & Nealson, K. H. (1988). Bacterial manganese reduction and growth with manganese oxide as the sole electron acceptor. Science 240, 1319–1321.[Abstract/Free Full Text]

Nakagawa, Y. & Yamasato, K. (1993). Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis. J Gen Microbiol 139, 1155–1161.

Nedashkovskaya, O. I., Kim, S. B., Hans, S. K. & 7 other authors (2003). Mesonia algae gen. nov., sp. nov., a novel marine bacterium of the family Flavobacteriaceae isolated from the green alga Acrosiphonia sonderi (Kütz) Kornm. Int J Syst Evol Microbiol 53, 1967–1971.[Abstract/Free Full Text]

Neu, B., Voigt, A., Mitlohner, R. & 7 other authors (2001). Biological cells as templates for hollow microcapsules. J Microencapsul 18, 385–395.[CrossRef][Medline]

Norris, J. R., Ribbons, D. W. & Varma, A. K. (editors) (1985). Methods in Microbiology, vol. 18. London: Academic Press.

Petrovskis, E. A., Vogel, T. M. & Adriaens, P. (1994). Effects of electron acceptors and donors on transformation of tetrachloromethane by Shewanella putrefaciens MR-1. FEMS Microbiol Lett 121, 357–364.[CrossRef][Medline]

Russell, N. J. & Nichols, D. S. (1999). Polyunsaturated fatty acids in marine bacteria – a dogma rewritten. Microbiology 145, 767–779.[Free Full Text]

Semple, K. M. & Westlake, D. W. S. (1987). Characterization of iron-reducing Alteromonas putrefaciens from oil field fluids. Can J Microbiol 33, 366–371.

Simidu, U., Kita-Tsukamoto, K., Yasumoto, K. & Yotsu, M. (1990). Taxonomy of four marine bacterial strains that produce tetrodotoxin. Int J Syst Bacteriol 40, 331–336.[Abstract/Free Full Text]

Skerratt, J. H., Bowman, J. P. & Nichols, P. D. (2002). Shewanella olleyana sp. nov., a marine species isolated from a temperate estuary which produces high levels of polyunsaturated fatty acids. Int J Syst Evol Microbiol 52, 2101–2106.[Abstract]

Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characteristics. In Methods for General and Molecular Biology, pp. 607–654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.

Steyn, P. L., Segers, P., Vancanneyt, M., Sandra, P., Kersters, K. & Joubert, J. J. (1998). Classification of heparinolytic bacteria into a new genus, Pedobacter, comprising four species: Pedobacter heparinus comb. nov., Pedobacter piscium comb. nov., Pedobacter africanus sp. nov. and Pedobacter saltans sp. nov. Proposal of the family Sphingobacteriaceae fam. nov. Int J Syst Bacteriol 48, 165–177.[Abstract/Free Full Text]

Venkateswaran, K., Dollhopf, M. E., Aller, R., Stackebrandt, E. & Nealson, K. H. (1998). Shewanella amazonensis sp. nov., a novel metal-reducing facultative anaerobe from Amazonian shelf muds. Int J Syst Bacteriol 48, 965–972.[Abstract/Free Full Text]

Wichels, A., Würtz, S., Döpke, H., Schütt, C. & Gerdts, G. (2006). Bacterial diversity in the breadcrumb sponge Halichondria panicea (Pallas). FEMS Microbiol Ecol 56, 102–118.[CrossRef][Medline]

Xu, M., Guo, J., Cen, Y., Zhong, X., Cao, W. & Sun, G. (2005). Shewanella decolorationis sp. nov., a dye-decolorizing bacterium isolated from activated sludge of a waste-water treatment plant. Int J Syst Evol Microbiol 55, 363–368.[Abstract/Free Full Text]

Yoon, J. H., Kang, K. H., Oh, T. K. & Park, Y. H. (2004a). Shewanella gaetbuli sp. nov., a slight halophile isolated from a tidal flat in Korea. Int J Syst Evol Microbiol 54, 487–491.[Abstract/Free Full Text]

Yoon, J. H., Yeo, S. H., Kim, I. G. & Oh, T. K. (2004b). Shewanella marisflavi sp. nov. and Shewanella aquimarina sp. nov., slightly halophilic organisms isolated from sea water of the Yellow Sea in Korea. Int J Syst Evol Microbiol 54, 2347–2352.[Abstract/Free Full Text]




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