|
|
||||||||
1 GBF Gesellschaft für Biotechnologische Forschung, Mascheroder Weg 1, D-38124 Braunschweig, Germany
2 DSMZ German Collection of Microorganisms and Cell Cultures, Mascheroder Weg 1b, D-38124 Braunschweig, Germany
Correspondence
Hans Reichenbach
hre{at}gbf.de
| ABSTRACT |
|---|
|
|
|---|
Further images of various growth phases of Byssovorax cruenta By c2T and a Polyangium strain are available as supplementary material in IJSEM Online.
| MAIN TEXT |
|---|
|
|
|---|
M. cruentus was apparently not seen by anybody for a whole century. It was not included in the Approved Lists of Bacterial Names (Skerman et al., 1989
). Yet the species does exist. Recently, after 30 years of isolating myxobacteria and accumulating a collection of more than 7000 strains, we found an organism with a most astonishing red colour unlike that of any other myxobacterium. Although it initially grew only reluctantly, we succeeded in isolating and cultivating it. It turned out to be a cellulose degrader. In addition to its colour, the organism showed several other peculiarities, as will be pointed out below. We therefore suggest that it be classified in a new genus, Byssovorax gen. nov. (referred to as Byssophaga by Reichenbach, 2005
; however, the name Byssophaga would be illegitimate, having been used for a moth of the Arctiidae), and that Thaxter's species epithet, cruenta, be revived, for there is little doubt of the identity of our strains with Thaxter's species. The shape of the vegetative cells is typical of members of the suborder Sorangineae (Reichenbach, 2005
), and 16S rRNA gene sequence data show that the novel bacterium indeed belongs to the family Polyangiaceae of that suborder (see Fig. 6
).
|
The organism was recognized as unusual because of its intense blood-red colour. Growth pattern and the shape of the vegetative cells suggested that it was a myxobacterium, although initially fruiting bodies were not found. It produced holes in the filter paper, which indicated that it was a cellulose degrader. The only other cellulose-decomposing myxobacteria known so far are the species of the genus Sorangium. Thus, while no blood-red Sorangium strains were ever seen by us and we have isolated 1900 such strains the novel bacterium has to be compared in particular with that genus.
Initially, the novel bacterium grew rather slowly, so that it took several months before pure cultures were obtained. It developed reasonably well on streaks of living E. coli on water agar under lysis of the food bacterium, which is in contrast to Sorangium, that neither grows on nor lyses living coli bacteria. The organism also grew quite well on autoclaved E. coli, as does Sorangium, but then the growth pattern of the two differed fundamentally. While Sorangium strains produce typical myxobacterial swarm colonies with more or less distinct radial veins (Fig. 1c
), the novel organism grew in the form of scattered, small, red pseudoplasmodia with fan-like fronts and long, tapering tails (Fig. 1a, b
). These pseudoplasmodia moved independently of one another over the substrate, leaving wrinkled, parchment-like slime trails behind (see Supplementary Fig. S1 in IJSEM Online). They could also penetrate the agar plate deeply and tunnel over long distances within it. Eventually, the pseudoplasmodia contracted into intensely blood-red knobs, usually 250600 µm in size, not unlike Myxococcus fruiting bodies (Fig. 2a
; a similar colour image is available as Supplementary Fig. S2 in IJSEM Online). Alternatively, they converted into massive, deep red rings, about 350500 µm in diameter, with central holes of 60120 µm (Supplementary Fig. S3). Rarely, they produced peculiar bowl- or cup-shaped structures, around 800 µm wide and 300 µm high (Supplementary Fig. S4). All this has never been seen in a Sorangium culture. Polyangium strains often grow in the form of isolated small, tight packs of cells (Fig. 2b
), and we isolated a few strains, tentatively identified as members of Polyangium, that even produced pseudoplasmodia, like those described for strain By c2T (Supplementary Fig. S5). However, these organisms were neither red nor did they attack cellulose. After many transfers, the novel bacterium sometimes changed its growth pattern, developing coherent swarm colonies with veins, as are known from other myxobacteria (Supplementary Fig. S6).
|
|
|
|
|
The nutritional requirements of the bacterium were studied on agar plates. There was no growth on plain water agar or on filter paper on water agar. For further studies, minimal media were applied. MM20 agar contained 0.05 % MgSO4.7H2O, 0.02 % CaCl2.2H2O, 0.01 % K2HPO4, 0.01 % KNO3 and 1.2 % agar; the pH was adjusted to 7.2 after autoclaving. GR33 medium contained 0.15 % MgSO4.7H2O, 0.02 % CaCl2.2H2O, 0.01 % K2HPO4, 0.01 % KNO3, 8 mg ferric sodium EDTA l1, a standard trace element solution, 20 mM HEPES and, instead of agar, 0.75 % Gelrite; the pH was again adjusted to 7.2 after autoclaving.
There was only minimal growth on these media, probably because of nutrient transfer with the inoculum. Clearly, agar did not serve as a carbon source. However, with filter paper, these media supported good growth under cellulose degradation, even after several transfers on the same medium. Instead of filter paper, pads of regenerated cellulose could be used, which were broken down completely, whereas filters of cellulose nitrate or cellulose acetate were not decomposed and did not allow growth. Clearly, cellulose was a sufficient carbon source for the novel organism, and nitrate was a useful nitrogen source.
A study of alternative nitrogen sources was performed on GR33 plates with filter paper as the carbon source and nitrate replaced by other nitrogen compounds. In no case was there any growth on these media without filter paper. Urea at 0.1 % supported good growth. So did sodium glutamate at 0.01 and 0.05 %, but at 0.1 % it prevented all growth. There was also excellent growth with vitamin-free Casamino acids (Difco) at 0.01 %, while at 0.1 % all growth was blocked. Apparently, glutamate and Casamino acids could serve only as sources of nitrogen and not carbon, and both became inhibitory at slightly elevated concentrations even in the presence of a good carbon source, such as cellulose. The same was true with Casitone (Difco), a tryptically digested casein peptone, which by itself supports growth of almost all myxobacteria, including many strains of Sorangium.
An investigation of potential carbon sources revealed a strong inhibitory effect of glucose. When 0.1 % or even 0.05 % glucose (filter-sterilized, as were all carbon compounds in this study) was added to yeast (VY/2) agar, all growth stopped, but when filter paper was placed on these media, the bacterium grew well, and the filter paper was broken down completely. At a glucose concentration of 0.2 % in yeast agar, the organism could not even grow on filter paper.
No growth was seen on minimal media with galactose, lactose, sucrose, sodium acetate or sodium lactate (each at 0.05 %). With the exception of acetate, good growth under destruction of cellulose was obtained when filter paper was placed on these media. Slight growth occurred with 0.05 % fructose, with good growth after the addition of filter paper. An increase of fructose to 0.3 % in MM20 agar allowed good growth with or without filter paper; the latter was degraded. Cellobiose at 0.05 % in minimal media allowed some growth, even good growth with filter paper; cellulose was degraded only reluctantly. At 0.2 % cellobiose, however, growth was poor or absent with or without filter paper.
In contrast to glucose, the addition of 0.050.15 % N-acetylglucosamine to yeast (VY/2) agar stimulated growth substantially, with or without filter paper. The yeast cells and, if present, the filter paper were decomposed. However, on minimal media with up to 0.3 % N-acetylglucosamine as the carbon source, there was only growth when filter paper was added; the latter was attacked.
One sugar that clearly and invariably supported growth, including on minimal media, was maltose. At concentrations between 0.05 and 0.4 % in minimal media, the organism grew quite well without filter paper, although even better with it. There also was good growth when nitrate was replaced by ammonium (sulfate). While the higher maltose concentrations allowed somewhat better growth, the difference between 0.1 and 0.4 % was not substantial. Cellulose degradation, however, was delayed at 0.2 % and blocked completely at 0.4 %. Good growth was also obtained with 0.1 % L-arabinose or 0.1 % D-xylose in nitrate agar with and without filter paper; in both cases cellulose was decomposed. Starch (0.2 % in nitrate minimal media) was hydrolysed, but allowed good growth only in combination with filter paper; the cellulose was degraded. The same was the case with xylan (from oat husks, 0.2 %).
Sorangium strains, in contrast, are not inhibited by glucose, and may in fact be cultivated on glucose and nitrate, and grow very well on starch as the only carbon source.
Efforts to cultivate the novel bacterium in a defined liquid medium were only moderately successful. Cultures of 20 ml medium in 100 ml Erlenmeyer flasks were shaken on a rotary shaker at 30 °C and 160 r.p.m. in constant, artificial light. A mineral salts medium, MM32LM, was used (KNO3, 0.05 %; MgSO4.7H2O, 0.02 %; CaCl2.2H2O, 0.02 %; K2HPO4, 0.01 %; ferric sodium EDTA, 1 mg per 100 ml; standard trace element solution; HEPES, 50 mM). When cellulose powder (around 0.5 %) was added to this medium, growth was moderate and slow, in the form of large flakes and bright red nodules. The medium remained turbid even after 35 days. Good and sustained growth was obtained with maltose in the concentration range between 0.05 and 0.5 %. At higher concentrations (14 %), the inoculum tended to degenerate quickly. Without maltose, there was no growth at all, which excludes feeding effects. The organism grew as small (0.053 mm diameter), intensely red nodules, and could be transferred to the same medium consecutively several times. Yet growth was slow, and the results of experiments could be analysed only after 814 days.
The response to various antibiotics was tested on yeast (VY/2) agar. Filter-sterilized solutions of the compounds were added after autoclaving to give 50 µg ml1 each. There was good growth in the presence of carbenicillin (sodium salt) and trimethoprim, moderate growth with polymyxin B sulfate and poor growth with bacitracin A. No growth was possible with chlortetracycline hydrochloride, oxytetracycline hydrochloride, cephalothin (sodium salt), phosphomycin (disodium salt) or rifampicin. Kanamycin sulfate, which is still often tolerated by Sorangium strains at 1000 µg ml1, allowed growth of the novel bacterium only up to 10 µg ml1. Acriflavin hydrochloride was completely inhibitory at 0.5 µg ml1, but there was some growth at 0.2 µg ml1.
The G+C content of the DNA of the novel organism was determined by HPLC (Mesbah et al., 1989
) and was found to be 69.9 mol%.
The complete sequence of the 16S rRNA gene of the type strain was elucidated, and phylogenetic analysis was performed as described by Margesin et al. (2004)
and Rainey et al. (1996)
. The highest similarity values were found with Sorangium cellulosum (=Polyangium cellulosum) ATCC 25531 (95.7 %), Chondromyces apiculatus Cm a2 (95.0 %) and Chondromyces pediculatus Cm p17 (94.6 %). Thus, the bacterium clearly belongs to the family Polyangiaceae, suborder Sorangineae, of the Myxococcales (Fig. 6
).
Presently, all cellulose-decomposing myxobacteria are classified in the genus Sorangium and in just two species, S. cellulosum (formerly Polyangium cellulosum) and Sorangium nigrum. The organism described above, while being a cellulose degrader, differs in so many essential morphological and physiological characteristics from Sorangium that creation of a new genus for it appears justified, and it is suggested to name it Byssovorax. It may be mentioned in this connection that, in the older literature, cellulolytic myxobacteria have been described belonging to other genera, such as Myxococcus cellulosus and Podangium cellulosum (now Stigmatella cellulosum) (Pronina, 1962
). We have been isolating cellulolytic myxobacteria now for more than 25 years, yet we have never encountered these species. While this does not disprove their existence the isolation of Byssovorax may be considered a warning we are rather inclined to assume that these organisms were in fact bacteriolytic strains simply growing in company with genuine cellulose degraders, which is indeed often observed. Angiococcus cellulosae, described by Mishustin (1938)
, later turned out to be the chytridiomycete Rhizophlyctis rosea [Mishustin, 1968
(transliterated as Michoustine in the latter article)]. It should also be understood that cellulolytic Cytophaga and Sporocytophaga, which were classified for some time as myxobacteria, are now recognized to belong to a different phylum.
As pointed out above, the bacterium described here is not really novel but was known before as Myxococcus cruentus Thaxter 1897
. Therefore, the species epithet will be retained for the present organism. It appears that M. cruentus has been reported in the literature only once more after Thaxter (1897)
. In 1930, H. and S. Krzemieniewscy gave a somewhat confusing description of a myxobacterium that they isolated twice from soil collected in beech forests of the Tatra mountains, Poland (Krzemieniewscy & Krzemieniewscy, 1930
). They regarded it as identical to Thaxter' s species, but renamed it Chondrococcus cruentus (now Corallococcus cruentus), because its firm fruiting bodies did not disintegrate when suspended in water and therefore would rather fit Jahn's genus Chondrococcus (which is, however, not supposed to have sporangioles). Judging from the (rather unsatisfactory) figures that accompany the text, the vegetative cells of that organism appear to have tapering ends and the myxospores appear to be spherical. The authors talk about cysts embedded in a colourless slime envelope, but do not mention specifically a true wall. The vegetative cells measured 0.41.0x3.65.4 µm and the myxospores 1.01.3x1.31.5 µm. The text as well as the figures rule out the idea that the bacterium was really M. cruentus, and it is certainly not identical with the myxobacterium described in this article.
Description of Byssovorax gen. nov. Reichenbach 2006
Byssovorax [Bys.so.vo'rax. Gr. fem. n. byssos cotton, fine linen (for cellulose); L. adj. vorax voracious, devouring; N.L. fem. n. Byssovorax devourer of cellulose].
Vegetative cells are cylindrical with rounded ends and move by gliding. Swarm colonies consist of many small pseudoplasmodia with a fan-like anterior and a tapering posterior end, migrating independently on and within the (agar) substrate. The pseudoplasmodia may contract after some time into knob-, ring- or cup-like masses that are, however, not fruiting bodies. Fruiting bodies consist of more or less spherical sporangioles with a definite wall, arranged in dense clusters, or sori. The genus belongs to the family Polyangiaceae, suborder Sorangineae, order Myxococcales. The type (and so far only) species is Byssovorax cruenta.
Description of Byssovorax cruenta sp. nov., nom. rev. (ex Thaxter 1897
, 409) Reichenbach 2006
Byssovorax cruenta (cru.en'ta. L. fem. adj. cruenta blood-red).
Displays the following attributes in addition to the characteristics of the genus. Vegetative cells are rather stout, 0.91.1x3.57.5 µm, phase dark. Pseudoplasmodia are deeply blood-red, of very variable size: fan-like anterior ends are 2002800 µm wide, tails are 26008000 µm long, often branched with several fans. The migrating pseudoplasmodia deposit slime trails of a parchment-like texture. After many transfers, true swarm colonies with veins may arise. The pseudoplasmodia eventually contract into 350500 µm wide, blood-red rings, 250600 µm large knobs or cup-shaped structures, around 800 µm wide and 300 µm high. Fruiting bodies are produced rarely and consist of large red sporangioles, 80140 µm in diameter (between 70x90 and 160x190 µm), in flat, sheet-like sori, 200600 µm in diameter (sometimes more than 1000 µm wide). Myxospores resemble vegetative cells in shape, but are stouter, 1.51.7x3.35 µm, and optically refractile. Crystalline cellulose (filter paper) is broken down completely. The organism requires a carbohydrate for growth; suitable substrates are cellulose, maltose, L-arabinose, D-xylose, fructose and cellobiose, in order of decreasing suitability. Glucose prevents all growth at the low concentration of 0.1 %, even in the presence of cellulose. Good nitrogen sources are nitrate, ammonium, urea, Casitone (Difco), Casamino acids and glutamate; slightly elevated concentrations of the organic nitrogen source, namely 0.2 %, may become totally inhibitory. N-Acetylglucosamine seems to serve (mainly) as an excellent nitrogen source. Chitin and starch are degraded, but only chitin allows growth and seems to be used as a carbon and nitrogen source. Cellobiose at somewhat higher concentrations (0.2 %) blocks cellulose degradation, as does glucose. The organism can be cultivated on yeast (VY/2) agar; the
-glucan of the bakers' yeast cell wall apparently supplies the required carbohydrate. Better growth is obtained on filter paper placed on VY/2 agar. Grows between 26 and 38 °C; optimum temperature around 30 °C; optimum pH about 7.2. Strictly aerobic. The G+C content of the DNA is 69.9 mol% (by HPLC).
The type strain, By c2T (=DSM 14553T=CIP 108850T), was isolated from soil with decaying plant material collected south of Holbrook, AZ, USA. It appears to be a very rare organism, or at least to live in places that have only rarely been investigated. So far, only two strains, obtained from the same sample, have been isolated in pure culture.
| ACKNOWLEDGEMENTS |
|---|
| REFERENCES |
|---|
|
|
|---|
Margesin, R., Schumann, P., Spröer, C. & Gounot, A. M. (2004). Arthrobacter psychrophenolicus sp. nov., isolated from an alpine ice cave. Int J Syst Evol Microbiol 54, 20672072.
Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159167.
Mishustin, E. N. (1938). Cellulose-decomposing myxobacteria. Mikrobiologiia 7, 427444 (in Russian).
Mishustin, E. (1968). Microorganismes cellulolytiques des sols de l'U.R.S.S. Ann Inst Pasteur 115, 596603 (in French).[Medline]
Pronina, N. I. (1962). Description of new species and varieties of cellulose-decomposing myxobacteria. Microbiology (English translation of Mikrobiologiia) 31, 384390.
Rainey, F. A., Ward-Rainey, N., Kroppenstedt, R. M. & Stackebrandt, E. (1996). The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal for Nocardiopsaceae fam. nov. Int J Syst Bacteriol 46, 10881092.
Reichenbach, H. (2005). Order VIII. Myxococcales Tchan, Pochon and Prévot 1948, 398AL. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2, part C, pp. 10591072. Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer.
Reichenbach, H. & Dworkin, M. (1992). The myxobacteria. In The Prokaryotes, 2nd edn, pp. 34163487. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K. H. Schleifer. New York: Springer.
Skerman, V. B. D., McGowan, V. & Sneath, P. H. A. (editors) (1989). Approved Lists of Bacterial Names (amended edition). Washington, DC: American Society for Microbiology.
Thaxter, R. (1897). Further observations on the Myxobacteriaceae. Bot Gaz 23, 395411.[CrossRef]
This article has been cited by other articles:
![]() |
R. O. Garcia, H. Reichenbach, M. W. Ring, and R. Muller Phaselicystis flava gen. nov., sp. nov., an arachidonic acid-containing soil myxobacterium, and the description of Phaselicystidaceae fam. nov. Int J Syst Evol Microbiol, June 1, 2009; 59(6): 1524 - 1530. [Abstract] [Full Text] [PDF] |
||||
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| HOME | HELP | FEEDBACK | SUBSCRIPTIONS | ARCHIVE | SEARCH | TABLE OF CONTENTS |
| INT J SYST EVOL MICROBIOL | MICROBIOLOGY | J GEN VIROL |
| J MED MICROBIOL | ALL SGM JOURNALS | |