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1 Coastal Marine Laboratory/Department of Biology, The Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong SAR
2 Department of Biology, The Chinese University of Hong Kong, Shatin, NT, Hong Kong SAR
3 Center for Marine Science, University of North Carolina at Wilmington, Wilmington, NC, USA
Correspondence
Pei-Yuan Qian
boqianpy{at}ust.hk
| ABSTRACT |
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7c. MK-6 was the only respiratory quinone. Flexirubin-type pigments were not produced. Phylogenetic analysis based on 16S rRNA gene sequences placed UST030701-324T in a distinct lineage in the family Flavobacteriaceae with less than 90·7 % sequence similarity to the members of the nearest genus, Psychroflexus. UST030701-324T can be distinguished from other members of Flavobacteriaceae by a number of chemotaxonomic and phenotypic characteristics. It is thus proposed that UST030701-324T represents a novel taxon designated Nonlabens tegetincola gen. nov., sp. nov. The type strain is UST030701-324T (=NRRL B-41136T=JCM 12886T).
A scanning electron micrograph and detailed phenotypic characteristics of UST030701-324T are available as supplementary material in IJSEM Online.
| MAIN TEXT |
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The bacterial strain UST030701-324T was isolated from a microbial mat covering a polystyrene surface retrieved from an estuarine mangrove habitat in the Bahamas. After 48 h of cultivation at 30 °C on an agar medium composed of 5 g peptone l1, 3 g yeast extract l1 and 0·22 µm-filtered-seawater (referred to as marine agar hereafter), UST030701-324T appeared as orange, convex, circular colonies (24 mm diameter) with smooth surfaces and entire translucent margins. No diffusible pigment was observed. Unless otherwise specified, all characteristics described hereafter were based on cultures grown on marine agar for 48 h at 30 °C. The optimum temperature for the growth of UST030701-324T was 2836 °C.
The nearly complete 16S rRNA gene sequence of UST030701-324T (1462 bp) was obtained using a dye terminator method as described elsewhere (Lau et al., 2004
). Comparison of the nearly complete 16S rRNA gene sequence of UST030701-324T to those available from GenBank revealed that UST030701-324T was a member of the family Flavobacteriaceae. A neighbour-joining phylogenetic tree constructed using the ARB software package (Ludwig et al., 2004
) showed that UST030701-324T formed a clade together with several uncharacterized bacterial strains (93·694·6 % sequence similarity). This clade did not cluster robustly with any recognized species or genus (Fig. 1
). UST030701-324T was nearest to the members of the genera Psychroflexus and Salegentibacter, with 16S rRNA gene sequence similarity ranging from 88·5 to 90·7 %. Trees based on maximum-parsimony and maximum-likelihood methods showed essentially the same topology (Fig. 1
). The results of phylogenetic analysis suggest that UST030701-324T represents a novel genus within the family Flavobacteriaceae.
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7c) and an unknown fatty acid with a carbon chain length equivalent to 13·6 (altogether representing 78·3 % of the total) as determined using the Sherlock Microbial Identification System according to the manufacturer's protocol (Table 1
9c and an unknown fatty acid (Table 1
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salinity (MacDonell et al., 1982
Chemotaxonomic and phenotypic characteristics that distinguish UST030701-324T from other genera of Flavobacteriaceae are given in Tables 1 and 2![]()
. UST030701-324T differs from the members of Psychroflexus by (i) having a different fatty acid profile, (ii) the absence of filamentous cells, carbohydrate metabolism (except for sucrose) or
- and
-glucosidase activities, (iii) being able to hydrolyse gelatin and (iv) being less halo- and psychrotolerant. UST030701-324T differs from the members of Salegentibacter by (i) having an orange pigmentation and a different fatty acid profile, (ii) being less halo- and psychrotolerant, (iii) being able to produce acetoin and (iv) the absence of carbohydrate metabolism (except for sucrose) or
-galactosidase activity. Additionally, UST030701-324T can be distinguished from other closely related genera by traits detailed in Table 2
. Molecular evidence together with chemotaxonomic and phenotypic characteristics suggests that UST030701-324T constitutes a novel genus within the family Flavobacteriaceae.
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Gram-negative, short rod, non-motile and not forming spores. Strictly aerobic. MK-6 was the only respiratory quinone. Flexirubin-type pigments are not produced. Catalase- and oxidase-positive. The genus contains one species, Nonlabens tegetincola, which is the type species.
Description of Nonlabens tegetincola sp. nov.
Nonlabens tegetincola (te.get.in'col.a. L. n. teges -etis mat; L. n. incola an inhabitant; N.L. n. tegetincola mat-inhabitant, pertaining to its microbial mat habitat).
Description is as for the genus plus the following. Colonies on marine agar are orange in colour, circular, 2·04·0 mm in diameter, convex with smooth surfaces and entire translucent margins. No diffusible pigment. Growth occurs between 12·0 and 44·0 °C (28·036·0 °C optimum), pH 5·0 and 10·0 and 2·0 and 4·0 % NaCl. Susceptible to ampicillin, chloramphenicol, penicillin, streptomycin and tetracycline, but not to kanamycin. DNA G+C content is 33·6 mol% and the dominant fatty acids are i15 : 0, i15 : 0 3-OH, i16 : 0, i16 : 0 3-OH, i17 : 0 3-OH, summed feature 3 (comprising i15 : 0 2-OH and/or 16 : 1
7c) and an unknown fatty acid with a carbon chain length equivalent to 13·6 (altogether representing 78·3 % of the total). Produces acetoin, but not indole or H2S. Nitrate is not reduced. Hydrolyses DNA, gelatin, starch and Tweens 20, 40 and 80, but not agar, casein, cellulose or chitin. Acid phosphatase, alkaline phosphatase,
-chymotrypsin, cystine arylamidase, leucine arylamidase, valine arylamidase, esterase (C4), esterase lipase (C8), lipase (C14), trypsin and naphthol-AS-BI-phosphohydrolase activities are positive. N-acetyl-
-glucosaminidase, arginine dihydrolase,
-fucosidase,
-galactosidase,
-galactosidase,
-glucosidase,
-glucosidase,
-glucuronidase,
-mannosidase, lysine decarboxylase, ornithine decarboxylase, tryptophan deaminase and urease activities are negative. Except for acid production from sucrose, no growth or acid production is observed from the carbon sources included in the API 50 CH, API 20 E and API 20 NE test systems. Except for growth on complex media containing yeast extract and peptone, the carbon and nitrogen sources supporting the growth of Nonlabens tegetincola are hitherto not known.
The type strain is UST030701-324T (=NRRL B-41136T=JCM 12886T), isolated from a microbial mat in an estuarine mangrove habitat in the Bahamas.
| ACKNOWLEDGEMENTS |
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| REFERENCES |
|---|
|
|
|---|
Baumann, P. & Baumann, L. (1988). The marine gram-negative eubacteria: genera Photobacterium, Beneckea, Alteromonas, Pseudomonas and Alcaligenes. In The Prokaryotes, vol. 1, pp.13021331. Edited by M. P. Starr, H. Stolp, H. G. Trüper, A. Balows & H. Schlegel. Berlin: Springer.
Bernardet, J. F., Segers, P., Vancanneyt, M., Berthe, F., Kersters, K. & Vandamme, P. (1996). Cutting a Gordian knot: emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom. nov. (basonym, Cytophaga aquatilis Strohl and Tait 1978). Int J Syst Bacteriol 46, 128148.
Bowman, J. P. (2000). Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov. Int J Syst Evol Microbiol 50, 18611868.
Bowman, J. P., McCammon, S. A., Brown, J. L., Nichols, P. D. & McMeekin, T. A. (1997). Psychroserpens burtonensis gen. nov., sp. nov., and Gelidibacter algens gen. nov., sp. nov., psychrophilic bacteria isolated from Antarctic lacustrine and sea ice habitats. Int J Syst Bacteriol 47, 670677.
Bowman, J. P., McCammon, S. A., Lewis, T., Skerratt, J. H., Brown, J. L., Nichols, D. S. & McMeekin, T. A. (1998). Psychroflexus torquis gen. nov., sp. nov., a psychrophilic species from Antarctic sea ice, and reclassification of Flavobacterium gondwanense (Dobson et al., 1993) as Psychroflexus gondwanense gen. nov., comb. nov. Microbiology 144, 16011609.
Collins, M. D. (1994). Isoprenoid quinones. In Chemical Methods in Prokaryotic Systematics, pp. 265310. Edited by M. Goodfellow & A. G. O'Donnell. Chichester: Wiley.
Donachie, S. P., Bowman, J. P. & Alam, M. (2004). Psychroflexus tropicus sp. nov., an obligately halophilic CytophagaFlavobacteriumBacteroides group bacterium from an Hawaiian hypersaline lake. Int J Syst Evol Microbiol 54, 935940.
Isnansetyo, A. & Kamei, Y. (2003). Pseudoalteromonas phenolica sp. nov., a novel marine bacterium that produces phenolic anti-methicillin-resistant Staphylococcus aureus substances. Int J Syst Evol Microbiol 53, 583588.
Ivanova, E. P., Alexeeva, Y. V., Flavier, S., Wright, J. P., Zhukova, N. V., Gorshkova, N. M., Mikhailov, V. V., Nicolau, D. V. & Christen, R. (2004). Formosa algae gen. nov., sp. nov., a novel member of the family Flavobacteriaceae. Int J Syst Evol Microbiol 54, 705711.
Johansen, J. E., Nielsen, P. & Sjoholm, C. (1999). Description of Cellulophaga baltica gen. nov., sp. nov. and Cellulophaga fucicola gen. nov., sp. nov. and reclassification of [Cytophaga] lytica to Cellulophaga lytica gen. nov., comb. nov. Int J Syst Bacteriol 49, 12311240.
Lau, S. C. K., Tsoi, M. M. Y., Li, X., Plakhotnikova, I., Wu, M., Wong, P. K. & Qian, P. Y. (2004). Loktanella hongkongensis sp. nov., a novel member of the
-Proteobacteria originating from marine biofilms in Hong Kong waters. Int J Syst Evol Microbiol 54, 22812284.
Lau, S. C. K., Tsoi, M. M. Y., Li, X. & 7 other authors (2005). Winogradskyella poriferorum sp. nov., a novel member of the family Flavobacteriaceae isolated from a sponge in the Bahamas. Int J Syst Evol Microbiol 55, 15891592.
Ludwig, W., Strunk, O., Westram, R. & 29 other authors (2004). ARB: a software environment for sequence data. Nucleic Acids Res 32, 13631371.
MacDonell, M. T., Singleton, F. L. & Hood, M. A. (1982). Diluent composition for use of API 20E characterizing marine and estuarine bacteria. Appl Environ Microbiol 44, 423427.
Macián, M. C., Pujalte, M. J., Márquez, M. C., Ludwig, W., Ventosa, A., Garay, E. & Schleifer, K. H. (2002). Gelidibacter mesophilus sp. nov., a novel marine bacterium in the family Flavobacteriaceae. Int J Syst Evol Microbiol 52, 13251329.[Abstract]
McCammon, S. A. & Bowman, J. P. (2000). Taxonomy of Antarctic Flavobacterium species: description of Flavobacterium gillisiae sp. nov., Flavobacterium tegetincola sp. nov. and Flavobacterium xanthum sp. nov., nom. rev., and reclassification of [Flavobacterium] salegens as Salegentibacter salegens gen. nov., comb. nov. Int J Syst Evol Microbiol 50, 10551063.[Abstract]
Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159167.
Nedashkovskaya, O. I., Suzuki, M., Vancanneyt, M., Cleenwerck, I., Zhukova, N. V., Vysotskii, M. V., Mikhailov, V. V. & Swings, J. (2004). Salegentibacter holothuriorum sp. nov. isolated from the edible holothurian Apostichopus japonicus. Int J Syst Evol Microbiol 54, 11071110.
Nedashkovskaya, O. I., Kim, S. B., Han, S. K. & 9 other authors (2005a). Winogradskyella thalassicola gen. nov., sp. nov., Winogradskyella epiphytica sp. nov. and Winogradskyella eximia sp. nov., marine bacteria of the family Flavobacteriaceae. Int J Syst Evol Microbiol 55, 4955.
Nedashkovskaya, O. I., Kim, S. B., Lysenko, A. M., Mikhailov, V. V., Bae, K. S. & Kim, I. S. (2005b). Salegentibacter mishustinae sp. nov., isolated from the sea urchin Strongylocentrotus intermedius. Int J Syst Evol Microbiol 55, 235238.
Neu, B., Voigt, A., Mitlohner, R. & 7 other authors (2001). Biological cells as templates for hollow microcapsules. J Microencapsul 18, 385395.[CrossRef][Medline]
Norris, J. R., Ribbons, D. W. & Varma, A. K. (editors) (1985). Methods in Microbiology, vol. 18. London: Academic Press.
Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characteristics. In Methods for General and Molecular Biology, pp. 607654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
Steyn, P. L., Segers, P., Vancanneyt, M., Sandra, P., Kersters, K. & Joubert, J. J. (1998). Classification of heparinolytic bacteria into a new genus, Pedobacter, comprising four species: Pedobacter heparinus comb. nov., Pedobacter piscium comb. nov., Pedobacter africanus sp. nov. and Pedobacter saltans sp. nov. Proposal of the family Sphingobacteriaceae fam. nov. Int J Syst Bacteriol 48, 165177.
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