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Centre for Cellular and Molecular Biology, Uppal Road, Hyderabad 500 007, India
Correspondence
S. Shivaji
shivas{at}ccmb.res.in
| ABSTRACT |
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| MAIN TEXT |
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Strain HHS 11T was isolated from a water sample collected from the snout of the Hamta glacier located at a height of 4270 m above sea level. The sample was processed as described previously (Shivaji et al., 2005b
) and pure colonies of bacteria were isolated by repeated streaking on plates containing nutrient agar [0·5 %, w/v, peptone (HiMedia); 0·3 %, w/v, beef extract (HiMedia); 0·5 %, w/v, NaCl; 1·5 %, w/v, agar; pH 7·0]. The plates were incubated at 22 °C for 3 days.
Nutrient agar medium was used for maintaining strain HHS 11T and for the determination of growth at various temperatures, at different pH values and in the presence of various concentrations of NaCl (Shivaji et al., 1989
). Phenotypic characteristics such as colony morphology, cell morphology, motility, various enzyme activities and gas production (Hugh & Leifson, 1953
), growth in various media, such as Ayers' and R2A (Ayers et al., 1919
; Chelius & Triplett, 2000
), and sensitivity to antibiotics at 22 °C were ascertained as described previously (Shivaji et al., 2004
, 2005a
) by using standard methods (Lanyi, 1987
; Smibert & Krieg, 1994
). Minimal medium [K2HPO4, 1·05 %, w/v; KH2PO4, 0·45 %, w/v; (NH4)2SO4, 0·1 %, w/v; agar, 1·5 %, w/v] was used to evaluate the ability of the culture to assimilate various carbon compounds (0·5 %, w/v) when provided as the only carbon source. The presence of a flexirubin-like pigment was tested according to the method of Weeks (1981)
. Fatty acid methyl esters were prepared according to the method of Sato & Murata (1988)
and analysed by GC (Shivaji et al., 2004
; 2005a
). The G+C content of the DNA was determined by the spectrophotometric method (Shivaji et al., 1989
). D. fermentans NS 114T was used as a reference strain in studies relating to morphology, biochemical tests and the identification of fatty acids.
To establish the phylogenetic position of strain HHS 11T, DNA was purified and the 16S rRNA gene was amplified and sequenced as described previously (Shivaji et al., 2000
). The almost-complete sequence of 1466 bases was manually aligned against the sequences of closely related species of Dyadobacter and other related genera using CLUSTAL W (Thompson et al., 1994
) (Fig. 1
) and phylogenetic affiliations were inferred using SEQBOOT, DNADIST, FITCH, DNAPARS and neighbour-joining, according to PHYLIP (Felsenstein, 1993
). The Kimura two-parameter method was used for DNA distance calculation (Kimura, 1980
), and bootstrap values were generated for 1000 replications of the data. In all cases, the input order of species added to the topology being constructed was randomized with the jumble option with a random seed of 7 and 10 replications. Majority rule (50 %) consensus trees were constructed (Page, 1996
).
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5c, C16 : 1
7c, C16 : 0 and iso-C17 : 0 3-OH. In D. crusticola CP183-8T, these fatty acids were also present; however, the level of iso-C15 : 0 was lower and the level of C16 : 1
7c was higher. The fatty acid composition of D. fermentans NS114T was very similar to that of strain HHS 11T except that it contains iso-C15 : 0 3-OH and lacks C18 : 1 (Table 2
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Colonies of strain HHS 11T on nutrient agar medium are round (23 mm in diameter) and light yellow. Cells are aerobic, Gram-negative rods and are non-motile. Growth occurs between 10 and 37 °C and at pH 68, but not at pH 10. The optimum temperature and pH for growth are 22 °C and pH 7. Growth occurs in the presence of 11·6 % NaCl. Growth occurs on nutrient agar medium, Ayers' agar and R2A medium. The strain is positive for catalase, oxidase, phosphatase, arginine decarboxylase and
-galactosidase, but negative for gelatinase, urease, lipase, lysine decarboxylase, arginine dihydrolase, utilization of citrate, H2S production, the methyl red test, the indole test, the VogesProskauer test, hydrolysis of aesculin, hydrolysis of starch and reduction of nitrate to nitrite. Acid is produced from D-xylose, D-arabinose and D-glucose, but not from D-ribose, D-fructose, D-galactose, L-rhamnose, sucrose, D-lactose, D-maltose or D-mannose. Utilizes L-arabinose, D-glucose, D-galactose, L-sorbose, sucrose, N-acetylglucosamine, methyl
-D-mannoside, methyl
-D-glucoside, L-fucose, melezitose, D-cellobiose, D-trehalose, D-lactose, D-raffinose, cellulose, amygdalin, dextran, glycogen, arbutin, salicin, glycerol, D-erythritol, D-adonitol, citrate, malonate, lactic acid, citric acid, 2-ketogluconate, inulin, sodium formate, sodium fumarate, sodium malate, sodium tartrate, sodium acetate, PEG, L-glycine, L-alanine, L-valine, L-leucine, L-isoleucine, L-serine, L-threonine, L-lysine, L-arginine, L-glutamic acid, L-aspartic acid, L-glutamine, L-asparagine, L-methionine, L-cysteine, L-tyrosine, L-phenylalanine, L-tryptophan, L-proline, L-histidine and L-creatinine as sole carbon sources. Does not utilize D-rhamnose, D-arabinose, L-melibiose, D-fructose, D-mannose, D-mannitol, D-xylose, L-xylose, D-ribose, D-maltose, D-sorbitol, dulcitol, myo-inositol, gluconate, hydroxybutyric acid, sodium succinate, sodium pyruvate, thioglycolate, starch, methanol or agar as sole carbon sources. Cells are sensitive to (µg per disc) ciprofloxacin (30), cefoperazone (75), cephotaxime (10), doxycycline (30), colistin (10), sulphamethazole (50), kanamycin (30), tetracycline (30), nalidixic acid (30), chloramphenicol (25), rifampicin (25), streptomycin (10), trimethoprim (25), norfloxacin (10), lomefloxacin (30), tobramycin (15) and amikacin (30), but resistant to cotrimoxazole (25), roxithromycin (30), nitrofurantoin (300), penicillin (10), cefuroxime (20), lincomycin (20), cefazolin (30), novobiocin (30), ampicillin (25 µg µl1), amoxicillin (30), bacitracin (10), vancomycin (10) and erythromycin (15). The pigment is flexirubin-like. The G+C content of the DNA is 49 mol%. The major cellular fatty acids are C14 : 0, iso-C15 : 0, iso-C15 : 1, C16 : 1
5c, C16 : 0, C16 : 1
7c, C16 : 0 3-OH, C18 : 1 and iso-C17 : 0 3-OH.
The type strain, HHS 11T (=JCM 12919T=MTCC 7023T), was isolated from a glacial water sample.
| ACKNOWLEDGEMENTS |
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| REFERENCES |
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