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1 School of Biological Sciences, Seoul National University, 56-1 Shillim-dong, Kwanak-gu, Seoul 151-742, Republic of Korea
2 Polar Research Institute, Korea Ocean Research and Development Institute, Ansan PO Box 29, Seoul 425-600, Republic of Korea
Correspondence
Jongsik Chun
jchun{at}snu.ac.kr
| ABSTRACT |
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9c. DNA G+C contents were 3436 mol%. The two isolates shared low genomic relatedness (27 %) and were differentiated from each other by several phenotypic characteristics. The polyphasic data presented in this study indicated that these isolates should be recognized as two separate novel species in a novel genus within the family Flavobacteriaceae. The name Sejongia gen. nov. is therefore proposed for the Antarctic isolates, with the type species Sejongia antarctica sp. nov. (type strain AT1013T=IMSNU 14040T=KCTC 12225T=JCM 12381T) and Sejongia jeonii sp. nov. (type strain AT1047T=IMSNU 14049T=KCTC 12226T=JCM 12382T).
The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA gene sequences of strains AT1013T and AT1047T are AY553293 and AY553294.
| INTRODUCTION |
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| METHODS |
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Molecular systematics.
16S rRNA genes were enzymically amplified from single colonies. Primers, PCR conditions and sequencing methods have been described elsewhere (Chun & Goodfellow, 1995
). The sequences of strains AT1013T and AT1047T were aligned manually with representative sequences of the family Flavobacteriaceae obtained from GenBank. Phylogenetic trees were inferred using the FitchMargoliash (Fitch & Margoliash, 1967
), maximum-likelihood (Felsenstein, 1993
), maximum-parsimony (Fitch, 1972
) and neighbour-joining (Saitou & Nei, 1987
) methods. Evolutionary distance matrices for the neighbour-joining and FitchMargoliash methods were generated according to the model of Jukes & Cantor (1969)
. Resultant tree topologies were evaluated by bootstrap analyses (Felsenstein, 1985
) based on 1000 resamplings. Alignment and phylogenetic analyses were carried out using the jPHYDIT program (available at http://chunlab.snu.ac.kr/jphydit) and PAUP 4.0 (Swofford, 1998
) as described previously (Chun et al., 2000
). Genomic relatedness between the two Antarctic isolates was examined using slot-blot DNADNA hybridization (Chun et al., 1998
).
Cultural, morphological and physiological properties.
Growth on several bacteriological media was tested: Anacker and Ordal agar (AOA; Anacker & Ordal, 1955
), cetrimide agar (Difco), MacConkey agar (Difco), MA, nutrient agar (NA; Difco), R2A, tryptic soy agar (TSA; Difco) and sea-salt-free Zobell's agar (Zobell, 1941
) [Bacto agar (Difco), 15 g; Bacto peptone (Difco), 5 g; yeast extract (Difco), 1 g; ferric citrate, 0·1 g; distilled water, 1 l]. The growth ranges for temperature were determined by using a temperature-gradient incubator (TVS 126MA; Advantec) using R2A broth in the range of 530 °C (5·0, 9·1, 11·5, 13·8, 15·8, 17·5, 19·4, 21·2, 23·3, 25·1, 27·6 and 30·0 °C). To determine cardinal temperatures, the resultant data were fitted to the Ratkowsky temperature growth model (Ratkowsky et al., 1983
) by non-linear regressions using the R package version 1.8.1 (R Foundation for Statistical Computing, 2003
). Growth at different pH (between pH 4 and pH 12 with increments of 1) and NaCl concentrations [between 0 % and 7 % (w/v) at 1 % increments] was determined using sea-salt-free ZoBell medium. KOH (6 M) and HCl (6 M) were used to adjust the final pH. Anaerobic and microaerophilic growth was checked under anaerobic (with 410 % CO2) and microaerobic (with 515 % O2 and 512 % CO2) conditions using GasPak Plus and CampyPak Plus systems (BBL) at 15 °C for up to 1 month.
Morphological and physiological tests were performed using R2A as the basal medium at 15 °C. Cellular morphology and motility were examined by SEM and phase-contrast microscopy using 3-, 5- and 10-day-old cells. Gliding motility was observed by direct microscopic examination of the edge of colonies in exponential phase on AOA, R2A and CY agar [casitone (Difco), 3 g; yeast extract, 1 g; CaCl2.2H2O, 1 g; sea salts (Sigma), 40 g; Bacto agar, 15 g; distilled water, 1 l] plates, and motility was observed by the hanging drop technique for cells in exponential phase in R2A and CY broth. The presence of flexirubin-type pigments was determined by flooding the cell mass taken from agar plates with 20 % (w/v) KOH and confirmed by examining bathychromatic shift of the absorbance spectrum of an ethanol and alkaline-ethanol extract of lysed cells (Weeks, 1981
). Congo red adsorption was tested by directly flooding colonies on agar plates with 0·01 % aqueous Congo red solution.
Standard physiological and biochemical tests were performed at 15 °C as described previously (Smibert & Krieg, 1994
). Hydrolysis of alginate (0·5 %, w/v), casein [50 % skimmed milk (Difco), v/v], CM-cellulose [0·5 % CM-cellulose (Sigma), w/v], chitin (0·5 % colloidal chitin, w/v), egg yolk (5 %, w/v), elastin (0·5 %, w/v), starch (0·2 %, w/v), Tween 80 (1 %, v/v) and L-tyrosine (0·5 %, w/v) was tested using R2A as the basal medium. PEK7 agar (Reichenbach, 1991
) and DNase test agar (Difco) were used for pectinase and DNase assay, respectively. Production of H2S was investigated using triple-sugar iron agar (Difco). Phenylalanine deaminase activity was determined on phenylalanine agar (Smibert & Krieg, 1994
) (yeast extract, 3 g; L-phenylalanine, 1 g; Na2HPO4, 1 g; NaCl, 5 g; Bacto agar, 12 g; distilled water, 1 l). Alkaline reaction on Christensen's citrate was tested on Christensen citrate agar (Christensen, 1949
). Aerobic acid production from carbohydrates was examined for up to 1 month using modified O/F agar plates (Leifson, 1963
) (casitone, 1·0 g; yeast extract, 0·1 g; ammonium sulfate, 0·5 g; Tris base, 0·5 g; phenol red, 0·01 g; Bacto agar, 15 g; distilled water, 1 l; adjusted to pH 7·0). Fermentative acid production from carbohydrates was examined for up to 2 weeks by API 50CH kit (bioMérieux) using API 50 CHB/E medium (bioMérieux) and mineral oil. Nitrate and nitrite reduction, indole production, arginine dihydrolase, urease, aesculinase, gelatinase,
-galactosidase and assimilation of sole carbon sources (glucose, arabinose, mannose, mannitol, N-acetylglucosamine, maltose, gluconate, caprate, adipate, malate, citrate and phenylacetate) were tested using the API 20NE kit (bioMérieux), and other enzymic activities were determined using the API ZYM kit (bioMérieux).
Chemotaxonomy.
Chemotaxonomic characteristics were determined in cells grown at 15 °C on R2A. Menaquinone was isolated from 7-day-old cells according to Minnikin et al. (1984)
and analysed by HPLC (Waters) as described by Collins (1985)
. DNA G+C content was determined by HPLC analysis of deoxyribonucleosides as described by Mesbah et al. (1989)
, using a reverse-phase column (Supelco). Fatty acid methyl esters analysis was performed by GLC according to the Microbial Identification (MIDI) System using 5-day-old cells.
| RESULTS AND DISCUSSION |
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Strains AT1013T and AT1047T showed 97·7 % 16S rRNA gene sequence similarity, corresponding to 31 nucleotide differences, and shared a low DNADNA relatedness value of 27 %, which is below the threshold (70 %) for determining bacterial species (Stackebrandt & Goebel, 1994
). It is clear from DNADNA pairing studies that the two Antarctic strains belong to separate genomic species.
Culture and growth conditions
When tested on several agar media, maximum growth was observed on R2A and abundant growth was observed on AOA, MA, NA, TSA and sea-salt-free Zobell's agar. No growth was observed on cetrimide or MacConkey agar. Square-root growth rate/temperature plots obtained using a temperature-gradient incubator and the Ratkowsky temperature growth model showed that the notional minimum, optimum and maximum growth temperatures of strains AT1013T and AT1047T were 16·6, 18·9, 28·2 and 10·9, 21·5, 30·9 °C, respectively (Fig. 2
). When tested on R2A (between 5 and 35 °C at 5 °C intervals) using conventional culturing methods, maximum growth was observed at 20 °C for both strains. From the definition of Isaksen & Jørgensen (1996)
, our Antarctic isolates can be defined as psychrotolerant bacteria. The other growth conditions are given in the genus and species descriptions.
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9c (21·3 % for AT1013T and 8·6 % for AT1047T) were found between the two isolates.
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9c. It is therefore proposed that the two Antarctic isolates be assigned to a novel genus, Sejongia gen. nov., in the family Flavobacteriaceae as Sejongia antarctica sp. nov. for strain AT1013T and Sejongia jeonii sp. nov. for strain AT1047T.
Description of Sejongia gen. nov.
Sejongia (Se.jong'i.a. N.L. fem. n. Sejongia named after the King Sejong Station, where the type species was isolated).
Gram-negative, oxidase- and catalase-positive and psychrotolerant. Cells are rod-shaped with rounded ends, non-motile and do not glide. Colonies are convex, translucent, circular, glistening, butyrous, yellow with entire margins, becoming mucoid after prolonged incubation on R2A. Does not adhere to agar plates. Flexirubin-type pigment is absent. Congo red is not adsorbed. Spores are not formed. Growth occurs on R2A, AOA, MA, NA and TSA, but not on cetrimide or MacConkey agar. Growth is aerobic. Growth under microaerobic (with 515 % O2 and 512 % CO2 created by CampyPak Plus system) and anaerobic (with 410 % CO2 created by GasPak Plus system) conditions is weaker than aerobic growth. Microaerobic growth is better than anaerobic growth. Growth is observed at pH 611 (optimum pH 78) and 03 % NaCl (optimum 0 %). Maximum absorption peak of pigment is at 452 nm and the next shoulder peak is at 480 nm. Major isoprenoid quinone is MK-6. Predominant cellular fatty acids are 15 : 0 iso (12·213·6 %), 15 : 0 anteiso (15·224·2 %) and 17 : 1 iso
9c (8·621·3 %). DNA G+C content is 3436 mol%. The type species is Sejongia antarctica.
Description of Sejongia antarctica sp. nov.
Sejongia antarctica (ant.arc'ti.ca. L. fem. adj. antarctica named after Antarctica, the geographical origin of the type strain).
Cells are approximately 1·03·1x0·40·5 µm. Grows at 428 °C with notional optimum of 18·9 °C. Does not produce arginine dihydrolase. Decomposes casein and gelatin, but not agar, alginate, CM-cellulose, chitin, elastin or pectin. Decomposes L-tyrosine weakly. Positive reactions for lecithinase and Tween esterase are delayed. Alkaline phosphatase, esterase lipase (C8), leucine arylamidase, valine arylamidase, acid phosphatase and naphthol-AS-BI-phosphohydrolase are positive and lipase (C14),
-galactosidase,
-glucuronidase and
-mannosidase are negative in API ZYM kits. Cannot assimilate any of the compounds contained in API 20NE kits as a sole carbon source. Does not produce acid aerobically from D-raffinose or D-salicin. Produces acid fermentatively from D-glucose, D-maltose, starch and glycogen, but not from glycerol, erythritol, D-arabinose, L-arabinose, D-ribose, D-xylose, L-xylose, D-adonitol, methyl
-D-xylopyranoside, D-galactose, D-fructose, D-mannose, L-sorbose, L-rhamnose, dulcitol, inositol, D-mannitol, D-sorbitol, methyl
-D-mannopyranoside, methyl
-D-glucopyranoside, N-acetylglucosamine, amygdalin, arbutin, aesculin ferric citrate, salicin, D-cellobiose, D-lactose (bovine origin), D-melibiose, D-sucrose, D-trehalose, inulin, D-melezitose, D-raffinose, xylitol, gentiobiose, D-turanose, D-lyxose, D-tagatose, D-fucose, L-fucose, D-arabitol, L-arabitol, potassium gluconate, potassium 2-ketogluconate or potassium 5-ketogluconate in the API 50 CH kit. Other physiological and biochemical characteristics are given in Table 1
. Fatty acid profile is given in Table 2
. DNA G+C content is 34 mol%.
The type strain is AT1013T (=IMSNU 14040T=KCTC 12225T=JCM 12381T), isolated from a soil sample of penguin habitats near the King Sejong Station on King George Island, Antarctica.
Description of Sejongia jeonii sp. nov.
Sejongia jeonii (jeo'ni.i. N.L. gen. n. jeonii named in honour of the late Jae Gyu Jeon, who devoted his life to polar research).
Cells are approximately 1·03·1x0·40·5 µm. Grows at 431 °C with notional optimum of 21·5 °C. Does not produce arginine dihydrolase. Decomposes casein, elastin and gelatin, but not agar, alginate, CM-cellulose, chitin, L-tyrosine or pectin. Alkaline phosphatase, esterase lipase (C8), leucine arylamidase, valine arylamidase, acid phosphatase and naphthol-AS-BI-phosphohydrolase are positive and lipase (C14),
-galactosidase,
-glucuronidase and
-mannosidase are negative in API ZYM kits. Cannot assimilate any of the compounds contained in API 20NE kits as sole carbon sources. Does not produce acid aerobically from D-raffinose or D-salicin. Produces acid fermentatively from D-glucose, D-mannose, D-maltose, starch and glycogen, but not from glycerol, erythritol, D-arabinose, L-arabinose, D-ribose, D-xylose, L-xylose, D-adonitol, methyl
-D-xylopyranoside, D-galactose, D-fructose, L-sorbose, L-rhamnose, dulcitol, inositol, D-mannitol, D-sorbitol, methyl
-D-mannopyranoside, methyl
-D-glucopyranoside, N-acetylglucosamine, amygdalin, arbutin, aesculin ferric citrate, salicin, D-cellobiose, D-lactose (bovine origin), D-melibiose, D-sucrose, D-trehalose, inulin, D-melezitose, D-raffinose, xylitol, gentiobiose, D-turanose, D-lyxose, D-tagatose, D-fucose, L-fucose, D-arabitol, L-arabitol, potassium gluconate, potassium 2-ketogluconate or potassium 5-ketogluconate in the API 50 CH kit. Other physiological and biochemical characteristics are given in Table 1
. Fatty acid profile is given in Table 2
. DNA G+C content is 36 mol%.
The type strain is AT1047T (=IMSNU 14049T=KCTC 12226T=JCM 12382T), isolated from a moss sample of penguin habitats near the King Sejong Station on King George Island, Antarctica.
| ACKNOWLEDGEMENTS |
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