A multigene approach to phylogenetic analysis using the genus Mycobacterium as a model, by G. Devulder, M. Pérouse de Montclos and J. P. Flandrois
International Journal of Systematic and Evolutionary Microbiology vol. 55, part 1, pp. 293 - 302
Supplementary Table A. Strains used in this study and GenBank accession numbers. [PDF] (23 KB)
Supplementary Fig. A. Phylogenetic tree of the genus Mycobacterium computed from hsp65 sequences by the neighbour-joining method with Kimura's two-parameter model as the substitution model. The tree includes 96 species and was rooted using Nocardia abscessus DSM 44432T. Sequence accession numbers are given in Supplementary Table A.
Supplementary Fig. B. Neighbour-joining tree of the genus Mycobacterium computed from rpoB sequences. The tree includes 95 species. See legend to Fig. A for further details.
Supplementary Fig. C. Neighbour-joining tree of the genus Mycobacterium computed from sod sequences. The tree includes 82 species. See legend to Fig. A for further details.
Supplementary Fig. D. Phylogenetic tree of the genus Mycobacterium computed from concatenation of 16S rRNA gene, hsp65, sod and rpoB sequences by maximum likelihood with a discrete-gamma model (calculated by PHYML). The tree includes 81 species and was rooted using Nocardia abscessus DSM 44432T.
[PDF file of Figs A-D] (516 KB)
