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INRS Institut Armand-Frappier, Université du Québec, 531 boulevard des Prairies, Laval, Quebec, Canada H7V 1B7
Correspondence
Pierre Juteau
pierre.juteau{at}inrs-iaf.uquebec.ca
| ABSTRACT |
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Published online ahead of print on 6 August 2004 as DOI 10.1099/ijs.0.02914-0.
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain LR7.2T is AY327251.
| MAIN TEXT |
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Clostridium sporogenes M55 (=ATCC 13732=DSM 754) was taken from our collection. Strains 6 and 7 are those described by Letowski et al. (2001)
. Clostridium sporogenes M55 and strain 6 were cultured at 37 °C in SBM1 medium, which consisted of the supplemented Boyd's medium (SBM) used by Letowski et al. (2001)
but without phenol or 4-OHB. Strain 7 was grown at 37 °C in SBM2 or SBM3 media. SBM2 medium contained 1·5 mM 4-OHB, 45 ml fresh SBM1 and 25 ml of the supernatant from an autoclaved culture (58 days old) of strain 6. SBM3 was similar to SBM2 except that an autoclaved culture of Clostridium sporogenes M55 was used instead of strain 6. Strain LR7.2T was isolated in semi-solid (0·3 % w/v agar) SBM2 medium using Veillon tubes (8x200 mm). After 1015 days of incubation, small colonies were recovered with a syringe and then diluted and inoculated in semi-solid SBM2 medium. This procedure was repeated three times. Purity of the resulting culture was confirmed by microscopic observation and the strain was designated LR7.2T. This strain was cultivated in a modified SBM3 medium (named SBM4): yeast extract was used instead of proteose peptone and the concentrations of Na2S and iron were reduced by a factor of 10 in order to minimize precipitation of FeS. In addition, after verifying the effect of different concentrations, 4-OHB was increased to 3·0 mM.
Phenol, 4-OHB, benzoate, 3-phenylproprionate, phenylalanine and cinnamate were analysed using a gas chromatograph coupled to a flame-ionization detector (GC-FID) (Bisaillon et al., 1991b
). Fatty acids present in the spent medium of Clostridium sporogenes were also quantified by GC-FID using an SPB-1000 column (30 mx0·32 mm; Supelco). GCMS was used to analyse [6D]-phenol and [4D]-4-OHB and to identify the 3-phenylproprionate found in the spent medium of Clostridium sporogenes (Bisaillon et al., 1991b
). Various compounds related to 4-OHB and phenol were analysed by HPLC (Dennie et al., 1998
). Growth was normally monitored by optical density measurements at 400 nm with a spectrophotometer (Spectronic 1001 plus; Milton Roy). Equivalence to cell concentration and biomass weight was determined by acridine orange direct count and dry weight measurement (Gerhardt et al., 1994
). Observations by light and electron microscopy were performed as described by Letowski et al. (2001)
.
Different growth conditions were tested: addition of a second reducing agent (Na2S2O4 1·5 % w/v) to SBM4; use of different gas mixtures (H2/CO2/N2 at 10 : 10 : 80, 10 : 0 : 90, 20 : 0 : 80, 80 : 0 : 20 and 0 : 0 : 100); variation of the concentration of 4-OHB from 0 to 12 mM and phenol from 0 to 14 mM; addition of 2 ml yeast extract 20 % (w/v), 25 ml supernatant from an autoclaved culture of Clostridium sporogenes M55 or 10 ml fresh SBM4 after 6 days of incubation; variation of pH from 6·0 to 9·0; and incubation at temperatures varying from 4 to 55 °C. Potential inorganic acceptors were tested in SBM4 in which Na2S was replaced by cysteine, with and without 4-OHB. Compounds related to phenol or 4-OHB were tested in SBM4 without 4-OHB.
The DNA G+C content was determined by HPLC (Mesbah & Whitman, 1989
). The 16S rRNA gene sequence was PCR-amplified with pA and pH primers (Edwards et al., 1989
) and cloned in pGEM-T Easy vector (Promega) using the manufacturer's protocol. The recombinant plasmids were used to transform competent Escherichia coli DH5
. Plasmids were purified by PEG precipitation (Sambrook et al., 1989
). The insert was sequenced with a 4200 DNA analysis system (LI-COR) using the following primers: pA and pH, 530f, 907r and 926f (Gerhardt et al., 1994
) and 533r [5'-TTACCGCGGC(T/G)GCTG-3'].
Cultures inoculated with strain LR7.2T alone and together with strain 6 or Clostridium sporogenes M55 were verified for spore formation by heating them at 70, 75 or 80 °C for 10 min after 610 days of incubation at 37 °C. Viability after treatment was checked by inoculating samples in fresh SBM4. Other samples were stained with malachite green and observed by light microscopy. For fatty acid methyl ester (FAME) analysis, cells grown in SBM4 for 6 days were used. FAMEs were separated and analysed with an MIS system version 2.11 according to the manufacturer's protocol (MIDI).
Colonies of strain LR7.2T in semi-solid medium were 1 mm in diameter with diffuse margins and were brownish after 10 days of incubation at 37 °C. Light and electron microscopic observations revealed that this strain was similar to strain 7 (1x2 µm, Gram-positive, electron-dense) described by Letowski et al. (2001)
. Its activity was also similar to strain 7 in that it transformed phenol and 4-OHB into benzoate. The 16S rRNA gene sequence of strain LR7.2T is identical to that of strain 7 (accession no. AF072863) except for two nucleotides, at positions 12 and 383. This shows that strains 7 and LR7.2T represent the same organism.
Based on a phylogenetic analysis (Fig. 1
), the closest relative to strain LR7.2T among other type strains is Pelotomaculum thermopropionicum DSM 13744T (90 % sequence similarity), a thermophilic, syntrophic propionate-oxidizing bacterium (Imachi et al., 2002
). Other species present on the tree are clearly not in the same lineage. Some sequences available in public databases show a closer relationship to strain LR7.2T but they are from uncultured or non-isolated bacteria (Letowski et al., 2001
). The DNA G+C content of strain LR7.2T was 51 mol%.
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The major fatty acid of strain LR7.2T is anteiso-C15 : 0, which is different from other related bacteria (Table 1
). No spore was observed in heat-treated cultures of this strain alone or in co-culture with strain 6 or Clostridium sporogenes M55. In addition, there was no growth or 4-OHB transformation 30 days after inoculation of a sample of the heat-treated cultures in fresh SBM4. This is surprising given that pasteurization was used during the enrichment process that led to the isolation of LR7.2T (Létourneau et al., 1995
). We hypothesize that strain LR7.2T can sporulate under the specific conditions that prevailed in the original consortium but that we did not reproduce here.
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4-OHB
benzoate). This metabolic pathway has been reported with phenol-transforming methanogenic consortia (Bisaillon et al., 1991b
phenol
4-OHB
benzoate), a phenomenon that has been observed with many phenol-transforming consortia derived from methanogenic environments (Knoll & Winter, 1989
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The following potential inorganic electron acceptors did not enable growth in the absence of 4-OHB (concentrations in mM are given in parentheses): sulphite (0·25, 0·5, 2, 5, 10), sulphate (0·25, 0·5, 2, 5, 10), sulphur (62), thiosulphate (10), nitrate (10), nitrite (10), FeCl3 (1), fumarate (10) and arsenate (10). When tested in the presence of 4-OHB, growth and 4-OHB transformation rates were lower than or equal to those observed in the non-amended media. Letowski et al. (2001)
reported that growth of strain 7 and 4-OHB transformation activity were stimulated by low concentrations of sulphite (up to 2 mM). However, they did not confirm that strain 7 used sulphite as an electron acceptor. We did not observe such stimulation here. The difference seems to be due to the medium we used: contrary to Letowski et al. (2001)
, our medium was supplemented with spent medium from a Clostridium sporogenes M55 culture. We hypothesize that strain LR7.2T could be stimulated by sulphite only under certain less favourable conditions.
Strain LR7.2T could not use for growth or transform any of the following compounds related to 4-OHB and phenol (concentrations in mM are given in parentheses): 4-hydroxybenzamide (0·7), methyl 4-OHB (3), 4-hydroxysulphonic acid (3), 4-hydroxyacetophenone (0·7), 4-hydroxybenzoic alcohol (3), hydroquinone (3), 4-chlorophenol (0·8), 4-hydroxycinnamic acid (3), 4-OHB hydrazide (0·6), 4-hydroxybenzaldehyde (3), 4-hydroxyphenyl pyruvic acid (3), 3-(4-hydroxyphenyl) propionic acid (3), p-cresol (3), 3-OHB (3), 4-hydroxypyridine (1), catechol (3), 2-bromophenol (3), 2-chlorophenol (3), 2-fluorophenol (3) and 2-aminophenol (3).
Strain LR7.2T can be clearly differentiated from its closest known relative, P. thermopropionicum, which normally grows in syntrophic association with hydrogen-scavenging methanogens (Imachi et al., 2002
). P. thermopropionicum grows in pure culture only on pyruvate and fumarate under a hydrogen-free atmosphere. In contrast, strain LR7.2T grows in pure culture in the presence of hydrogen. Moreover, P. thermopropionicum is a thermophilic organism (optimal growth temperature 55 °C) whereas strain LR7.2T is mesophilic. Finally, the fatty acid compositions of cells of P. thermopropionicum and strain LR7.2T are different. In addition, strain LR7.2T can be easily differentiated from other related genera (Desulfotomaculum, Moorella, Sporotomaculum) based on morphological, physiological and phylogenetic criteria, as stated by Letowski et al. (2001)
. It also differs from Desulfitobacterium species that use sulphite as an electron acceptor. The ability of strain LR7.2T to use the transformation of phenol and 4-OHB to generate energy for growth is unique. Consequently, based on these phenotypic differences and the phylogenetic analysis, we propose that strain LR7.2T should be included in a new genus, Cryptanaerobacter gen. nov., as Cryptanaerobacter phenolicus sp. nov.
Description of Cryptanaerobacter gen. nov.
Cryptanaerobacter [Crypt.an.ae'ro.bac.ter. Gr. adj. kryptos hidden; Gr. pref. an not; Gr. n. aer air; anaero not (living) in air; N.L. masc. n. bacter rod; N.L. masc. n. Cryptanaerobacter an anaerobic rod that is hidden within the consortium].
Gram-positive, anaerobic bacteria in the form of short rods; electron-dense. Sulphate, thiosulphate, nitrate, nitrite, FeCl3, fumarate and arsenate are not used as electron acceptors. Sulphite is not normally used even though stimulation of growth and 4-OHB transformation activity at low concentrations (up to 2 mM) has been noted under certain culture conditions. The type species is Cryptanaerobacter phenolicus.
Description of Cryptanaerobacter phenolicus sp. nov.
Cryptanaerobacter phenolicus (phen.o'li.cus. N.L. n. phenol -olis phenol; N.L. masc. adj. phenolicus relating to phenol).
Cells are 1 µm in diameter and 2 µm long. Metabolism of the bacteria is stimulated by supplementing the culture medium with spent medium from Clostridium sporogenes M55 (=ATCC 13732=DSM 754). Colonies in soft agar are 1 mm in diameter with diffuse margins and are brownish after 10 days of incubation. Optimum growth occurs under an atmosphere consisting of 10 % H2, 10 % CO2 and 80 % N2 at 3037 °C and pH 7·58·0 but remains low (4x106 cells ml1). Phenol is carboxylated into 4-OHB, 4-OHB is decarboxylated into phenol and 4-OHB is dehydroxylated into benzoic acid. Phenol or 4-OHB is essential for growth; the transformation of phenol or 4-OHB into benzoate produces energy that is conserved for growth. None of the following compounds related to 4-OHB and phenol is transformed or used for growth: 4-hydroxybenzamide, methyl 4-OHB, 4-hydroxysulphonic acid, 4-hydroxyacetophenone, 4-hydroxybenzoic alcohol, hydroquinone, 4-chlorophenol, 4-hydroxycinnamic acid, 4-OHB hydrazide, 4-hydroxybenzaldehyde, 4-hydroxyphenyl pyruvic acid, 3-(4-hydroxyphenyl) propionic acid, p-cresol, 3-hydroxybenzoate, 4-hydroxypyridine, catechol, 2-bromophenol, 2-chlorophenol, 2-fluorophenol and 2-aminophenol. Sporulation has not been observed in pure culture or in defined co-culture but the capacity to form spores probably exists, since pasteurization was used during the enrichment process that led to the isolation. The major membrane fatty acid is anteiso-C15 : 0. The DNA G+C content is 51 mol%.
The type strain, LR7.2T (=ATCC BAA-820T=DSM 15808T), was isolated from a methanogenic consortium that resulted from the mixture of swamp water, sewage sludge, swine waste and soil.
| ACKNOWLEDGEMENTS |
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