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1 Systematic Mycology and Lichenology Laboratory, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100080, China
2 Japan Collection of Microorganisms, RIKEN (The Institute of Physical and Chemical Research), Wako, Saitama, 351-0198, Japan
Correspondence
Feng-Yan Bai
baify{at}sun.im.ac.cn
| ABSTRACT |
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Published online ahead of print on 5 March 2004 as DOI 10.1099/ijs.0.63092-0.
The GenBank/EMBL/DDBJ accession numbers for the ITS region and 26S rDNA D1/D2 domain sequences determined in this study are AY487563AY487570, AB118870 and AB118871.
A phylogenetic tree showing relationships between the three novel Bullera species and related taxa is available as supplementary material in IJSEM Online.
| INTRODUCTION |
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Recently, three novel Bullera species belonging to the B. mrakii clade were found among ballistoconidium-forming yeast strains isolated from plant leaves collected in China. The present study supports the distinct nature of the B. mrakii clade in basidiomycetous yeasts of the Tremellales group.
| METHODS |
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Morphological, physiological and biochemical characteristics were examined according to standard methods (Yarrow, 1998
). Assimilation of nitrogen compounds was investigated on solid media with starved inocula (Nakase & Suzuki, 1986
). Extraction, purification and identification of ubiquinones were carried out according to Yamada & Kondo (1973)
.
Sequence analysis.
Nuclear DNA was extracted by the method of Makimura et al. (1994)
. Sequencing of the ITS (including 5.8S rDNA) and 26S rDNA D1/D2 domain and molecular phylogenetic analysis were performed using methods described previously (Bai et al., 2002a
).
| RESULTS AND DISCUSSION |
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rDNA sequence analysis
Three taxa were recognized among the four strains studied from the rDNA sequence comparisons. Strains HX 15.5T and ST 19.14 had identical D1/D2 and ITS sequences. CB 169T and HX 19.3T differed markedly from each other and from the other two strains in the same rDNA regions.
In the phylogenetic tree drawn from the D1/D2 sequence alignment, the three taxa formed three distinct branches in the B. mrakii clade (Fig. 1
). This clade was strongly supported (100 %) by bootstrap analysis. In the tree drawn from ITS sequences, the B. mrakii clade was also resolved with 100 % bootstrap support (phylogenetic tree available as supplementary material in IJSEM Online). Strains CB 169T and HX 15.5T clustered in a subclade with B. mrakii and four other described species in both the D1/D2 and ITS trees. Strain CB 169T differed from the other taxa in the subclade by 719 nt (1·43·1 %) and 2940 nt (>7 %) in the D1/D2 and ITS regions, respectively. Strain HX 15.5T differed from the other taxa in the same subclade by 1319 nt (2·13·1 %) and 3958 nt (>10 %) in the D1/D2 and ITS regions, respectively.
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These data indicated that strains CB 169T, HX 15.5T and HX 19.3T represent three novel Bullera species, for which the names Bullera cylindrica sp. nov., Bullera nakasei sp. nov. and Bullera hubeiensis sp. nov. are proposed.
Characteristics of the B. mrakii clade
The B. mrakii clade recognized in the present study belongs to the Tremellales in the Hymenomycetes (Fell et al., 2000
; Scorzetti et al., 2002
). This clade is closely related to taxa in the Luteolus clade of the Tremellales (Scorzetti et al., 2002
). Interestingly, the B. mrakii clade is composed exclusively of species belonging to the single genus Bullera, although these species are only distantly related to the type species Bullera alba (anamorph of Bulleromyces albus), as showed in Fig. 1
. This could imply that species in the B. mrakii clade should be moved to a different genus. The precedent is that the genus Dioszegia was reinstated and redefined by rDNA sequence analysis to accommodate both ballistoconidium-forming and other yeast species in a sister clade of the B. mrakii clade (Takashima et al., 2001
). In addition to the signature sequences in the 18S rDNA, Dioszegia species form orange-coloured colonies (Bai et al., 2002b
; Takashima et al., 2001
; Wang et al., 2003
). Though a sequence signature (AAGCTC) was found near the 3' end of the ITS2 regions of all the species in the B. mrakii clade (data not shown), no particular morphological or physiological characteristics could be found to discriminate species in this clade from other Bullera species. Therefore, it is thought to be premature to propose a new genus for this clade based only on rDNA sequence data at present.
Physiological differences between species in the B. mrakii clade are shown in Table 1
. B. cylindrica sp. nov. can be distinguished from closely related species by its ability to assimilate nitrate and to grow in vitamin-free medium. B. hubeiensis sp. nov. is distinct in its inability to assimilate D-arabinose, D-ribose, L-rhamnose, salicin and succinate. B. nakasei sp. nov. can be differentiated by the combination of assimilation reactions of L-sorbose, ribitol, nitrite and ethylamine and the formation of starch-like substances.
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Latin diagnosis of Bullera cylindrica Bai, Wang et Takashima sp. nov.
In YM (Difco) liquido post dies 5 ad 20 °C, cellulae vegetativae ovoideae, ellipsoideae aut cylindratae, 2·54·5x5·57·5 µm, singulae aut binae. Annulus et sedimentum formantur. In agaro YM post unum mensem ad 20 °C, cultura flavae-cremea, glabra vel rugosa, non-nitida, butyracea, margine glabra. Pseudomycelium formantur. Ballistoconidia napiformia vel subglobosa, 3·55·5x3·05·0 µm. Fermentatio nulla. Glucosum, galactosum, L-sorbosum (lente et exigue), saccharosum, maltosum, cellobiosum, trehalosum, melibiosum, raffinosum, melezitosum, amylum solubile, D-xylosum, L-arabinosum, D-arabinosum, D-ribosum, L-rhamnosum, D-glucosaminum, D-mannitolum (lente et exigue), galactitolum (lente et exigue), glucitolum, methyl
-D-glucosidum, salicinum, acidum succinicum et inositolum assimilantur, at non lactosum, inulinum, methanolum, ethanolum, glycerolum, erythritolum, ribitolum, acidum DL-lacticum, acidum citricum nec hexadecanum. Ammonium sulfatum, kalium nitricum, natrum nitrosum, L-lysinum, ethylaminum et cadaverinum assimilantur. Ad crescentiam vitaminum non necessarium est. Maxima temperatura crescentiae: 27 °C. Materia amyloidea iodophila formantur. Urea finditur. Diazonium caeruleum B positivum. Ubiquinonum majus: Q-10. Typus: CB 169T (=AS 2.2308T=CBS 9744T), isolatus ex folio Brachybotrys paridiformis Maxim.
Description of Bullera cylindrica Bai, Wang & Takashima sp. nov.
Bullera cylindrica (cy.lin'dri.ca. L. nom. fem. adj. cylindrica referring to the cylindrical shaped vegetative cells of the species).
In YM broth, after 5 days at 20 °C, cells are ovoid, ellipsoidal or cylindrical, 2·54·5x5·57·5 µm, and occur singly or in pairs (Fig. 2a
). Budding is polar. A sediment and a ring are formed. On YM agar, after 1 month at 20 °C, the streak culture is yellowish cream, butyrous, dull, smooth or somewhat wrinkled. The margin is entire. In Dalmau plate culture on cornmeal agar, pseudohyphae are formed. Ballistoconidia are produced on cornmeal agar and are napiform or subglobose, 3·55·5x3·05·0 µm (Fig. 2b
). Fermentation of glucose is negative. Glucose, galactose, L-sorbose (delayed and weak), sucrose, maltose, cellobiose, trehalose, melibiose, raffinose, melezitose, soluble starch, D-xylose, L-arabinose, D-arabinose, D-ribose, L-rhamnose, D-glucosamine, galactitol (delayed and weak), D-mannitol (delayed and weak), D-glucitol, methyl
-D-glucoside, salicin, succinic acid and inositol are assimilated. Lactose, inulin, methanol, ethanol, glycerol, erythritol, ribitol, DL-lactic acid, citric acid and hexadecane are not assimilated. Ammonium sulfate, potassium nitrate (delayed), sodium nitrite, L-lysine, ethylamine hydrochloride and cadaverine dihydrochloride are assimilated. Maximum growth temperature is 27 °C. Growth in vitamin-free medium is positive. Starch-like substances are produced. Growth on 50 % (w/w) glucose/yeast extract agar is negative. Urease activity is positive. Diazonium blue B reaction is positive. The major ubiquinone is Q-10. The type strain, CB 169T (=AS 2.2308T=CBS 9744T), was isolated from a wilting leaf of Brachybotrys paridiformis Maxim. collected in Changbai Mountain, northeast China in October, 1998.
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-D-glucosidum (exigue) et inositolum (exigue) assimilantur, at non L-sorbosum, lactosum, inulinum, amylum solubile, D-arabinosum, D-ribosum, L-rhamnosum, D-glucosaminum, methanolum, ethanolum, glycerolum, erythritolum, ribitolum, salicinum, acidum DL-lacticum, acidum succinicum, acidum citricum nec hexadecanum. Ammonium sulfatum et L-lysinum assimilantur, at non kalium nitricum, natrum nitrosum, ethylaminum nec cadaverinum. Vitaminae externae ad crescentiam necessaria sunt. Maxima temperatura crescentiae: 22 °C. Materia amyloidea iodophila non formantur. Urea finditur. Diazonium caeruleum B positivum. Ubiquinonum majus: Q-10. Typus: HX 19.3T (=AS 2.2466T=CBS 9747T), isolatus ex folio Tilia sp.
Description of Bullera hubeiensis Bai, Wang & Takashima sp. nov.
Bullera hubeiensis (hu.be.i.en'sis. L. nom. masc. adj. hubeiensis referring to Hubei Province, China, the geographical origin of the species).
In YM broth, after 5 days at 20 °C, cells are ellipsoidal or ovoid, 2·54·5x5·07·5 µm, and occur singly, in pairs or in clusters (Fig. 3a
). Budding is multilateral. A ring and a sediment are formed. On YM agar, after 1 month at 20 °C, the streak culture is cream to light yellow, butyrous, dull, smooth and somewhat wrinkled. The margin is entire or eroded. In Dalmau plate culture on cornmeal agar, pseudohyphae are formed. Ballistoconidia are produced on cornmeal agar and are napiform or subglobose, 3·75·0x4·96·2 µm (Fig. 3b
). Fermentation of glucose is negative. Glucose, galactose, sucrose, maltose, cellobiose, trehalose, melibiose, raffinose, melezitose, D-xylose, L-arabinose, galactitol (weak), D-mannitol (weak), D-glucitol, methyl
-D-glucoside (weak) and inositol (weak) are assimilated. L-Sorbose, lactose, inulin, soluble starch, D-arabinose, D-ribose, L-rhamnose, D-glucosamine, methanol, ethanol, glycerol, erythritol, ribitol, salicin, DL-lactic acid, succinic acid, citric acid and hexadecane are not assimilated. Ammonium sulfate and L-lysine are assimilated. Potassium nitrate, sodium nitrite, ethylamine hydrochloride and cadaverine dihydrochloride are not assimilated. Maximum growth temperature is 22 °C. Growth in vitamin-free medium is negative. Starch-like substances are not produced. Growth on 50 % (w/w) glucose/yeast extract agar is negative. Urease activity is positive. Diazonium blue B reaction is positive. The major ubiquinone is Q-10. The type strain, HX 19.3T (=AS 2.2466T=CBS 9747T), was isolated from a wilting leaf of Tilia sp. collected in Xingshan County, Hubei Province, China in October, 2002.
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-D-glucosidum, salicinum, acidum succinicum et inositolum assimilantur, at non lactosum, inulinum, D-glucosaminum, methanolum, ethanolum, glycerolum, ribitolum, galactitolum, acidum DL-lacticum, acidum citricum nec hexadecanum. Ammonium sulfatum, L-lysinum et ethylaminum assimilantur, at non kalium nitricum, natrum nitrosum nec cadaverinum. Vitaminae externae ad crescentiam necessaria sunt. Maxima temperatura crescentiae: 27 °C. Materia amyloidea iodophila non formantur. Urea finditur. Diazonium caeruleum B positivum. Ubiquinonum majus: Q-10. Typus: HX 15.5T (=AS 2.2435T=CBS 9746T), isolatus ex folio Litsea sp.
Description of Bullera nakasei Bai, Wang & Takashima sp. nov.
Bullera nakasei (na.ka.se.i. L. gen. masc. n. nakasei in honour of Dr Takashi Nakase, Japan, for his outstanding contributions to the progress of systematics of ballistoconidium-forming yeasts).
In YM broth, after 5 days at 20 °C, cells are ovoid, ellipsoidal or apiculate, 2·06·0x6·214·5 µm, and occur singly or in pairs (Fig. 4a
). Budding is multilateral. Sediment and a ring are formed. On YM agar, after 1 month at 20 °C, the streak culture is cream to light yellow, butyrous, semi-shiny to dull, smooth and somewhat wrinkled. The margin is entire or eroded. In Dalmau plate culture on cornmeal agar, true hyphae are formed. Ballistoconidia are produced on cornmeal agar and are napiform, subglobose or somewhat trigonal, 3·27·4x4·58·7 µm (Fig. 4b
). Fermentation of glucose is negative. Glucose, galactose, L-sorbose, sucrose, maltose, cellobiose, trehalose, melibiose, raffinose, melezitose, soluble starch (weak), D-xylose, L-arabinose, D-arabinose, D-ribose, L-rhamnose, erythritol (delayed and weak), D-mannitol (delayed and weak), D-glucitol, methyl
-D-glucoside, salicin, succinic acid and inositol are assimilated. Lactose, inulin, D-glucosamine, methanol, ethanol, glycerol, ribitol, galactitol, DL-lactic acid, citric acid and hexadecane are not assimilated. Ammonium sulfate, L-lysine and ethylamine hydrochloride are assimilated. Potassium nitrate, sodium nitrite and cadaverine dihydrochloride are not assimilated. Maximum growth temperature is 27 °C. Growth in vitamin-free medium is negative. Starch-like substances are not produced. Growth on 50 % (w/w) glucose/yeast extract agar is negative. Urease activity is positive. Diazonium blue B reaction is positive. The major ubiquinone is Q-10. The type strain, HX 15.5T (=AS 2.2435T=CBS 9746T), was isolated from a wilting leaf of Litsea sp. collected in Xingshan County, Hubei Province, China in October, 2002.
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| ACKNOWLEDGEMENTS |
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