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State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100080, P.R. China
Correspondence
Xiuzhu Dong
dongxz{at}sun.im.ac.cn
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Published online ahead of print on 9 January 2004 as DOI 10.1099/ijs.0.02903-0.
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of Syntrophomonas curvata strain GB8-1T is AY290767.
Transmission electron micrographs of strain GB8-1T are available as supplementary material in IJSEM Online.
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To date, seven species and/or subspecies have been described to degrade butyric acid, as well as some long-chain fatty acids (up to C18), syntrophically. Both physiological and genetic characterization suggested that six of them belonged to the family Syntrophomonadaceae (McInerney, 1992
; Zhao et al., 1993
), within the phylum of low-G+C, Gram-positive bacteria. They are Thermosyntropha lipolytica DSM 11003T (Svetlitshnyi et al., 1996
), Syntrophothermus lipocalidus DSM 12680T (Sekiguchi et al., 2000
), Syntrophospora bryantii DSM 3014T (Stieb & Schink, 1985
; Zhao et al., 1990
), Syntrophomonas wolfei subsp. wolfei DSM 2245T (McInerney et al., 1979
, 1981
; Beaty & McInerney, 1987
), Syntrophomonas wolfei subsp. saponavida DSM 4212T (Lorowitz et al., 1989
) and Syntrophomonas sapovorans DSM 3441T (Roy et al., 1986
). Syntrophus aciditrophicus ATCC 700169T, a bacterium that syntrophically degrades both fatty acids (C4C18) and benzoate, was affiliated to the
-Proteobacteria and clustered with the syntrophic bacteria that oxidize propionate or benzoate (Jackson et al., 1999
). In the present study, we isolated a new anaerobe, strain GB8-1T, that syntrophically degraded C4C18 straight-chain fatty acids in co-culture with a hydrogenotrophic microbe. Phylogenetic analysis indicated that strain GB8-1T was a member of the genus Syntrophomonas; however, it was not related closely to either of the described species in this genus. Moreover, it could be distinguished from the other species by cell shape and substrate range.
Strain GB8-1T was isolated from granular sludge that was sampled from a lab-scale, mesophilic, up-flow anaerobic sludge blanket (UASB) reactor treating beer wastewater in Tsinghua University, Beijing, China. Methanobacterium formicicum DSM 1535T was kindly provided by Dr Alfons Stams in the Department of Microbiology, Wageningen University, the Netherlands, and Syntrophomonas sapovorans DSM 3441T was purchased from the DSMZ (Braunschweig, Germany).
The pre-reduced basal medium used in this study was prepared as described by McInerney et al. (1979)
, except that the growth-stimulating factors used were 0·05 % (w/v) yeast extract and 0·05 % (w/v) tryptone, instead of 5·0 % (v/v) rumen fluid. The gas phase was N2/CO2 (80 : 20; 1·01x105 Pa), except that it comprised H2/CO2 (80 : 20; 1·25x105 Pa) for cultivating M. formicicum DSM 1535T. All inoculations and transfers were done with syringes and needles and all cultures were incubated at 37 °C in the dark unless indicated. Purity of strain GB8-1T in co-culture and pure culture was examined periodically by monitoring cell morphology under a normal bright-field microscope and clones on solid media, as well as monitoring lack of growth in a rich medium like peptone/yeast extract/glucose (PYG) medium.
To test the substrate range of strain GB8-1T in co-culture with a methanogen, the following organic acids were each used as the sole substrate: acetate, propionate, isobutyrate, butyrate, isovalerate and valerate (20 mM each); caproate, heptanoate, caprylate and benzoate (10 mM each); caprate, undecanoate, laurate, myristate, pentadecanoate, palmitate, margarate, stearate, oleate and linoleate (5 mM each, with equimolar CaCl2). After inoculation, cultures were incubated for up to 60 days. Meanwhile, acetate, propionate and methane production and substrate degradation were measured. Cell growth was monitored by measurement of the OD600 of the culture. Fatty acids and CH4 were detected by GC (GC-14B, Shimadzu) as described by Touzel & Albagnac (1983)
; N2 acted as the carrier gas. Column temperatures were 50 and 220 °C for the CH4 and short-chain fatty acid assays, respectively. Fatty acids longer than C7 were esterified into fatty acid methyl esters (FAMEs) before being measured and column temperatures were 200, 220 and 240 °C for C8C13, C14C17 and C18 fatty acids, respectively. Benzoate was measured by HPLC (series 1050, Hewlett Packard) as described by Jackson et al. (1999)
. The molar growth yield of strain GB8-1T in pure culture on crotonate was determined according to the method of Jackson et al. (1999)
.
In order to determine optimum growth conditions for strain GB8-1T in co-culture and pure culture, basal medium with 20 mM butyrate and crotonate, respectively, was used. The pH of the media was adjusted to 5·59·5 by using 1 M HCl or 1 M NaOH. To determine the growth temperature profile, cultures were incubated at 1555 °C (pH 7·5) in a water bath with a temperature controller. To determine NaCl tolerance, 01000 mM NaCl was added to the media. After cultivation for up to 60 days, growth was determined by measurement of the OD600 of the culture and substrate degradation. All determinations were performed in duplicate with 10 % inoculum.
Exponential-phase cells of strain GB8-1T were used for morphology examination with a transmission electron microscope (H-600A, Hitachi). Before observation, negative staining was performed with uranyl acetate. Ultrathin sections were stained with uranyl acetate and lead citrate, according to Reynolds (1963)
.
Diamino acids of the cell wall were assayed by TLC on a cellulose plate; the solvent system of Rhuland et al. (1955)
was used. Whole-cell fatty acids were analysed as FAMEs with the MIDI Microbial Identification system.
Genomic DNA was extracted from cells of strain GB8-1T grown on crotonate, as described by Marmur (1961)
. The DNA G+C content was determined by using the thermal denaturation method (Marmur & Doty, 1962
) with a DU 800 spectrophotometer (Beckman). DNA from Escherichia coli K-12 was used as reference for determination of the thermal-melting profile (Tm).
The 16S rRNA gene of strain GB8-1T was amplified by PCR and sequenced by using methods described by Weisburg et al. (1991)
. The 16S rRNA gene sequences of strain GB8-1T and reference strains in GenBank were aligned by using the DNAMAN program (version 4.0; Lynnon Biosoft). A phylogenetic tree was constructed with the neighbour-joining method and the topology of the phylogenetic tree was evaluated by bootstrap analysis of the sequence data with the DNAMAN program.
Granular sludge was inoculated into a medium with 20 mM butyrate, in order to enrich anaerobic, butyrate-degrading consortia. After many roll-tube isolation steps (Hungate, 1969
) in the butyrate medium, in which 5 % (v/v) culture of M. formicicum DSM 1535T and 5 % (v/v) dilution of the enrichment culture were inoculated, a biculture that produced methane on butyrate, but not on PYG medium, was obtained. This biculture formed brownish colonies of 0·51·0 mm diameter in roll tubes and with green fluorescence under light at 420 nm. Only two kinds of cell shape were observed in the biculture: one was a straight, M. formicicum-like rod and the other was a slightly curved rod. The biculture was purified further on medium with 20 mM crotonate as the sole substrate (instead of butyrate) and 10 mM 2-bromoethanesulfonic acid to inhibit the methanogen; a monoculture, designated strain GB8-1T, was obtained. Strain GB8-1T hardly grew on solid medium in pure culture; tiny white colonies of 0·10·2 mm diameter were formed. Strain GB8-1T neither grew on butyrate alone nor produced CH4, whereas it degraded butyrate in an artificially constructed co-culture with M. formicicum DSM 1535T.
Cells of strain GB8-1T were slightly curved rods with round to acute ends that were 0·50·7 µm in width and 2·34·0 µm in length and occurred singly, in pairs or in helical filaments. Negative staining showed the presence of one to three flagella inserted in one or both poles or subpoles (see Supplementary Figure, available in IJSEM Online). Spores were not observed. Although the Gram reaction of the cell wall was variable, a Gram-negative structure was revealed by ultrathin section (see Supplementary Figure, available in IJSEM Online).
Strain GB8-1T could degrade 1 mol butyrate into about 2 mol acetate and 1 mol (presumably) H2, which was consumed by M. formicicum DSM 1535T in the co-culture within 3 weeks. Electron and carbon recoveries of butyrate degradation were 102·19±2·23 and 96·57±2·60 %, respectively. Straight-chain fatty acids with 418 carbons could be degraded by the co-culture (Table 1
); however, neither branched-chain fatty acids, such as isobutyrate and isovalerate, nor benzoate were degraded. Among the substrates used, fatty acids with an even number of carbons were converted into acetate and H2, whereas those with an odd number of carbons were converted into propionate, acetate and H2, implying that
-oxidation of fatty acids was performed by the co-culture. None of the following substances could be used by strain GB8-1T as a potential electron acceptor for butyrate degradation: sodium sulfate (20 mM), sodium thiosulfate (20 mM), sulfur (20 mM), sodium nitrate (20 mM) or sodium fumarate (20 mM). These results indicate the affiliation of strain GB8-1T to the syntrophic acetogen group.
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Temperature ranges for the co-culture on butyrate and pure culture on crotonate were both 2042 °C, with optimal growth at 3537 °C; the pH range for both types of culture was 6·3±8·4, with an optimal pH of 7·5; and the NaCl tolerance concentration ranges were both 0100 mM (better growth occurred below 50 mM NaCl). No growth was observed when oxygen was present.
Peptidoglycan of strain GB8-1T contained LL-diaminopimelic acid. The major fatty acids were as follows: C14 : 0 (27·82 %), C15 : 0 (19·24 %), C14 : 0 3-OH (10·90 %) and an unknown structure component, with quite a high percentage (21·44 %), with an equivalent chain-length (ECL) of 14·503. The fatty acid profile was not similar to those of anaerobic bacteria in the MIDI database, as C16 : 0 was one of the predominant fatty acids in many Clostridium spp. and Syntrophus aciditrophicus (Jackson et al., 1999
; Broda et al., 2000
); however, it occurred at a very low level (2·79 %) in strain GB8-1T.
The genomic DNA G+C content of strain GB8-1T was determined to be 46·6 mol%; this is different from those reported for the members of the Syntrophomonadaceae by 2·49 mol% (Matthies et al., 2000
; Sekiguchi et al., 2000
).
A phylogenetic tree including strain GB8-1T and other members of the family Syntrophomonadaceae was constructed (Fig. 1
), based on a consensus length of 1395 bp of their 16S rRNA genes. Sequence similarity showed that strain GB8-1T was related most closely to Syntrophomonas sapovorans DSM 3441T (95·4 % similarity); similarities of <93 % were revealed with the other described species in the genus Syntrophomonas and other genera within the family Syntrophomonadaceae.
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Description of Syntrophomonas curvata sp. nov.
Syntrophomonas curvata (cur.va'ta. L. fem. adj. curvata curved).
Cells are Gram-negative, curved rods, 0·50·7x2·34·0 µm, non-spore-forming, with one to three polar or subpolar flagella. Straight-chain fatty acids with C4C18 serve as substrates for strain GB8-1T in co-culture with M. formicicum DSM 1535T. Even-numbered fatty acids are degraded into acetate and presumably H2, whereas odd-numbered ones are degraded into propionate, acetate and H2. Acetate, propionate, isobutyrate, isovalerate and benzoate do not support growth of the co-culture. Fumarate, sulfate, thiosulfate, sulfur and nitrate cannot act as electron acceptors for butyrate oxidation. Crotonate is the only substrate tested that enables growth of the strain in pure culture, whilst yeast extract, tryptone, glucose, ribose, xylose, pyruvate and fumarate do not. Cellular fatty acids comprise mainly C14 : 0 (27·82 %), C15 : 0 (19·24 %), C14 : 0 3-OH (10·90 %) and an unknown component of ECL 14·503 (21·44 %). Genomic DNA G+C content is 46·6 mol%.
The type strain, GB8-1T (=CGMCC 1.5010T=DSM 15682T), was isolated from the granular sludge of a UASB reactor treating beer wastewater in Beijing, China.
| ACKNOWLEDGEMENTS |
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