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1 Aventis Pharma Deutschland GmbH, Drug Innovation and Approval, Natural Products, 65926 Frankfurt, Germany
2 School of Life Sciences and Chemical Technology, 535 Clementi Road, Singapore 599489
3 DSMZ Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Mascheroder Weg 1b, 38124 Braunschweig, Germany
Correspondence
Joachim Wink
joachim.wink{at}aventis.com
| ABSTRACT |
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Published online ahead of print on 8 August 2003 as DOI 10.1099/ijs.0.02586-0.
The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA gene sequences of strains DSM 44594T, DSM 44213T and DSM 43134T are AJ508237, AJ508236 and AJ577997, respectively.
| MAIN TEXT |
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Micrographs of the strain described in this study are shown in Fig. 1
. Morphological and physiological characteristics of DSM 44594T were observed on various agar cultures as described by Shirling & Gottlieb (1966)
: yeast extract/malt extract agar (ISP 2), oatmeal agar (ISP 3), inorganic salt/starch agar (ISP 4), glycerol/asparagine agar (ISP 5), peptone/yeast extract/iron agar (ISP 6) and tyrosine agar (ISP 7), incubated for 10 days at 28 °C. For scanning electron microscopy (Grabley et al., 1992
), the strain was grown on ISP 3 agar. A honey-yellow vegetative mycelium developed on all ISP media tested (RAL colour code 1005; Deutsches Institut für Gütesicherung und Kennzeichnung e.V. Reichsausschuß für Lieferbedingungen). Aerial mycelium was only formed on ISP 3 medium and a soluble red pigment was produced on ISP 7 medium. After 710 days on ISP 3 medium, sporangium-like elements were formed. These elements showed a smooth surface and a regular shape under the scanning electron microscope. Spores were not detected either inside or outside the pseudosporangia.
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To determine the antimicrobial spectrum (Williams et al., 1989
), bacteria were grown on MuellerHinton agar and fungi on Czapek Dox agar. Antibacterial activity was seen after cultivation on ISP 2, ISP 3 and starch media, especially against Staphylococcus aureus, Micrococcus luteus, Streptomyces murinus and Bacillus subtilis. Antifungal activity was not detected.
For metabolite production, Amycolatopsis strains were incubated in four different media: a soymeal medium, a starch medium and ISP 2 and 3 media for 7 days in a shaking flask culture at 28 °C. After cultivation, the whole culture was extracted with methanol, evaporated and dissolved in water.
Analysis of whole-cell diaminopimelic acid (A2pm) isomers and sugars was done by the method of Hasegawa et al. (1983)
. Phospholipids and menaquinones were analysed by the method of Kutzner et al. (1986)
. To determine the whole-cell fatty acid profile, the fast method with trimethylsulfonium hydroxide (TMSH) was used (Müller et al., 1990
). Major fatty acids were i-C15 : 0 (22·5 %), C17 : 0 (11·4 %) and i-C16 : 0 (10·3 %), whilst i-C14 : 0 (6·4 %), ai-C15 : 0 (9·4 %), i-C15 : 0 2-OH (8·7 %), C15 : 0 (7·6 %), C17 : 1 (5·8 %), C16 : 0 (3·3 %), C15 : 1 (2·1 %), i-C17 : 0 (1·7 %), ai-C17 : 0 (3·4 %), i-C16 : 0 2-OH (2·8 %), ai-C15 : 0 2-OH (1·9 %), C17 : 0 2-OH (1·5 %) and 10-methyl i-C17 : 0 (1·2 %) occurred in smaller amounts. Phospholipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, hydroxyphosphatidylethanolamine phosphatidylinositol and phosphatidylinositol mannoside. Menaquinones were MK-8(H4) and MK-9(H4). The peptidoglycan diamino acid was meso-A2pm; cell-wall sugars were arabinose and galactose.
Genomic DNA extraction, PCR-mediated amplification of the 16S rRNA gene and purification of PCR products were carried out as described previously (Rainey et al., 1996
). The almost-complete 16S rRNA gene sequence of strain DSM 44594T (1464 nt) was aligned manually against 16S rRNA gene sequences of representatives of the main actinobacterial lineages and then against members of the genus Amycolatopsis. Pairwise evolutionary distances were computed by using the correction of Jukes & Cantor (1969)
. A phylogenetic dendrogram (Fig. 2
) was reconstructed from the distance matrix by using the treeing algorithm of DeSoete (1983)
. Strain DSM 44594T was related closely to Amycolatopsis azurea DSM 43854T (99·2 % sequence similarity), Amycolatopsis orientalis IMSNU 20058T (99·0 %), Amycolatopsis japonica DSM 44213T (99·1 %) and Amycolatopsis keratiniphila DSM 44409T (99·1 %) (Al-Musallam et al., 2003
). Sequence similarity values with less closely related members of the genus ranged between 95·0 and 98·8 %.
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Strain DSM 44594T differs from related Amycolatopsis species in cultural properties. Whilst the substrate mycelium is honey-yellow on all ISP media, A. azurea forms steel-blue to purpleviolet colonies, A. orientalis and A. lurida form yellow to beige colonies, A. japonica forms white colonies on some ISP media and Amycolatopsis keratiniphila has sand-yellow colonies. Based on carbohydrate utilization patterns and the API ZYM and API 20E panels (Table 1
), strain DSM 44594T has highest similarity to A. orientalis and A. lurida, but has more pronounced differences from A. azurea, A. japonica and other species (data not shown; Chun et al., 1999
; Kim et al., 2002
).
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Description of Amycolatopsis decaplanina sp. nov.
Amycolatopsis decaplanina (de.ca.pla.ni'na. N.L. fem. adj. decaplanina formed from the name of the antibiotic decaplanin, which is produced by the organism).
Aerobic, non-motile, Gram-positive, catalase-positive actinomycete that forms extensively branched substrate mycelium. After 710 days on ISP medium 3, regular-shaped to globose and smooth-surfaced sporangium-like elements (pseudosporangia) are formed. Spores are not detected either inside or outside the pseudosporangia. Colonies are honey-yellow on ISP media 17. Aerial mycelium is formed only on ISP medium 3. A soluble red pigment is only produced on ISP medium 7. Melanoid pigment is not produced. Carbohydrate utilization and enzymic relation towards the API ZYM and API 20E substrate panels are indicated in Table 1
. Major fatty acids (>10 %) are i-C15 : 0, i-C16 : 0 and C17 : 0. Menaquinones are MK-8(H4) and MK-9(H4). Produces the glycopeptide antibiotic decaplanin.
Type strain is FH 1845T (=DSM 44594T=NRRL B-24209T). Isolated from soil in India.
| ACKNOWLEDGEMENTS |
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