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Int J Syst Evol Microbiol 54 (2004), 227-233; DOI  10.1099/ijs.0.02669-0
© 2004 International Union of Microbiological Societies

Thermodesulfatator indicus gen. nov., sp. nov., a novel thermophilic chemolithoautotrophic sulfate-reducing bacterium isolated from the Central Indian Ridge

H. Moussard1, S. L'Haridon1, B. J. Tindall2, A. Banta3, P. Schumann2, E. Stackebrandt2, A.-L. Reysenbach3 and C. Jeanthon1

1 UMR 6539, Centre National de la Recherche Scientifique & Université de Bretagne Occidentale, Institut Universitaire Européen de la Mer, 29280 Plouzané, France
2 DSMZ – German Collection of Microorganisms and Cell Cultures, Mascheroder Weg 1b, D-38124 Braunschweig, Germany
3 Department of Biology, Portland State University, Portland, OR 97201, USA

Correspondence
H. Moussard
moussard@univ-brest.fr A.-L. Reysenbach
reysenbacha{at}pdx.edu


    ABSTRACT
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A thermophilic, marine, anaerobic, chemolithoautotrophic, sulfate-reducing bacterium, strain CIR29812T, was isolated from a deep-sea hydrothermal vent site at the Kairei vent field on the Central Indian Ridge. Cells were Gram-negative motile rods that did not form spores. The temperature range for growth was 55–80 °C, with an optimum at 70 °C. The NaCl concentration range for growth was 10–35 g l-1, with an optimum at 25 g l-1. The pH range for growth was 6–6·7, with an optimum at approximately pH 6·25. H2 and CO2 were the only electron donor and carbon source found to support growth of the strain. However, several organic compounds were stimulatory for growth. Sulfate was used as electron acceptor, whereas elemental sulfur, thiosulfate, sulfite, cystine, nitrate and fumarate were not. No fermentative growth was observed with malate, pyruvate or lactate. The phenotypic characteristics of strain CIR29812T were similar to those of Thermodesulfobacterium hydrogeniphilum, a recently described thermophilic, chemolithoautotrophic sulfate-reducer. However, phylogenetic analyses of the 16S rRNA gene sequences showed that the new isolate was distantly related to members of the family Thermodesulfobacteriaceae (similarity values of less than 90 %). The chemotaxonomic data (fatty acids and polar lipids composition) also indicated that strain CIR29812T could be distinguished from Thermodesulfobacterium commune, the type species of the type genus of the family Thermodesulfobacteriaceae. Finally, the G+C content of the genomic DNA of strain CIR29812T (46·0 mol%) was not in the range of values obtained for members of this family. On the basis of phenotypic, chemotaxonomic and genomic features, it is proposed that strain CIR29812T represents a novel species of a new genus, Thermodesulfatator, of which Thermodesulfatator indicus is the type species. The type strain is CIR29812T (=DSM 15286T=JCM 11887T).


Published online ahead of print on 1 August 2003 as DOI 10.1099/ijs.0.02669-0.

The GenBank accession number for the 16S rRNA gene sequence of Thermodesulfatator indicus CIR29812T is AF393376.

Details for the fatty acids of strain CIR29812T are available in IJSEM Online.


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In the latest edition of Bergey's Manual of Systematic Bacteriology, the class Thermodesulfobacteria (Garrity & Holt, 2001Go) contained two species: Thermodesulfobacterium commune and Thermodesulfobacterium mobile (recently renamed Thermodesulfobacterium thermophilum) (Judicial Commission of the International Committee on Systematics of Prokaryotes, 2003Go). In the past few years, two novel species of the genus Thermodesulfobacterium, Thermodesulfobacterium hveragerdense (Sonne-Hansen & Ahring, 1999Go) and Thermodesulfobacterium hydrogeniphilum (Jeanthon et al., 2002Go), have been described and classified in this genus. All Thermodesulfobacterium species are anaerobic, thermophilic, non-spore-forming, deeply branching, sulfate-reducing bacteria. With the exception of the marine chemolithoautotrophic organism T. hydrogeniphilum, all Thermodesulfobacterium spp. are chemo-organotrophs that thrive in terrestrial and subterrestrial environments (Zeikus et al., 1983Go; Rozanova & Khudyakova, 1974Go; Sonne-Hansen & Ahring, 1999Go). Recently, a new strictly chemolithoautotrophic, iron-reducing species, ‘Geothermobacterium ferrireducens’, was isolated from hot springs at Yellowstone National Park (USA). This organism represents the only member of the family Thermodesulfobacteriaceae that is unable to reduce sulfate (Kashefi et al., 2002Go).

We describe here the isolation and characterization of another novel thermophilic, strictly chemolithoautotrophic, sulfate-reducing bacterium. The new isolate was obtained from a sample of an active black smoker collected at a depth of 2420 m at the Kairei vent field (25°19' S, 70° 02' E) on the Central Indian Ridge (Van Dover et al., 2001Go) in April 2001. The chimney fragment was collected by the ROV Jason and was placed in an isolated container for the trip to the surface. Subsamples of the chimney fragment were ground in a mortar and the slurry was stored under an atmosphere of nitrogen at 4 °C until used as an inoculum.

Initial enrichments were done using the following medium that contained (l-1 distilled water): 29 g NaCl; 7 g MgSO4.7H2O; 4 g NaOH; 0·5 g KCl; 2 g Na2S2O3.5H2O; 1·66 g MgCl2.6H2O; 0·4 g CaCl2.2H2O; 0·2 g NH4Cl; 0·3 g K2HPO4.3H2O; and 10 ml of a trace element stock solution according to Boone et al. (1989)Go (http://methanogens.pdx.edu/OCM_media.html). The medium was prepared with anoxic water and, prior to autoclaving, the pH was adjusted to pH 6 at room temperature with sulfuric acid. The medium was dispensed under a CO2 atmosphere into Bellco tubes and capped with butyl-rubber stoppers. After inoculation with the sulfide slurry [10 % (v/v) inoculum], the tubes were pressurized with H2 (100 %; 138 kPa) and incubated at 70 °C without shaking.

After 4 days, cultures of small motile rods producing sulfide were observed. Enrichments that produced sulfide were subsequently transferred to a sulfate-reducing bacteria (SRB) medium that consisted of (l-1 distilled water): 20 g NaCl; 4 g Na2SO4; 3 g MgCl2.6H2O; 0·2 g KH2PO4; 0·5 g KCl; 0·25 g NH4Cl; 3·46 g PIPES; 0·15 g CaCl2.2H2O; 1 mg resazurin; 2 mg sodium tungstate; 0·5 mg sodium selenate; 1 ml vitamin mixture (Widdel & Bak, 1992Go); 1 ml thiamin solution (Widdel & Bak, 1992Go); and 0·05 mg vitamin B12. The pH of the medium was adjusted to pH 6·7 at room temperature using 5 M HCl. After autoclaving under N2 (100 %), the pH had decreased to 6·5. Medium (10 ml) was dispensed anaerobically in 50 ml vials sealed with butyl-rubber stoppers and reduced with 0·1 ml of a 10 % (w/v) Na2S.9H2O sterile solution; H2/CO2 (80 : 20; 200 kPa) was used as the gas phase. Cultures were incubated at 70 °C with shaking (150 r.p.m.). The pH of the medium in uninoculated vials checked at room temperature after incubation at 70 °C decreased from 6·5 to 6·3.

One pure culture, strain CIR29812T, was obtained by using shake dilution tubes (Widdel & Bak, 1992Go) of SRB solidified medium, where agar was replaced by 0·7 % (w/v) Phytagel (Sigma). After 6 days incubation at 70 °C, smooth, brown, spindle-shaped colonies of approximately 1 mm in diameter were transferred into SRB medium and checked for purity microscopically. Furthermore, the purity of the isolate was checked at 55 and 70 °C. SRB medium supplemented with 2 g Difco yeast extract l-1, 2 g tryptone l-1 and 10 mM glucose with air in the headspace was used to check for aerobic contaminants. The latter medium prepared anaerobically with N2 (100 %; 200 kPa) or H2 (100 %; 100 kPa) as the gas phase was used to detect anaerobic contaminants. The presence of possible autotrophic contaminants was checked in SRB medium where sulfate was omitted but where 2 g Difco yeast extract l-1 and 2 mM acetate were added. Stock cultures of strain CIR29812T were stored in SRB medium at 4 °C. However, frequent transfers (twice per month) with 10 % (v/v) of inoculum in freshly prepared culture medium were found optimal to ensure re-growth. Alternatively, the isolate was stored in liquid nitrogen in the same medium containing 5 % (w/v) DMSO.

Cells of strain CIR29812T were small rods, approximately 0·8–1 µm in length and 0·4–0·5 µm in width, with a single polar flagellum (Fig. 1Goa, b). Cells occurred singly, in pairs or in chains of three cells, and elongated during the stationary phase of growth. Occasionally, visible creamy aggregates that corresponded to large clumps of cells could be observed in the liquid medium. No spores were produced.



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Fig. 1. (a) Phase-contrast micrograph of strain CIR29812T; bar, 5 µm. (b) Electron micrograph of negatively stained cell (method as described by Jeanthon et al., 2002Go); bar, 500 nm.

 
Unless otherwise stated, growth experiments were performed in duplicate in SRB medium supplemented with 0·5 g tryptone l-1 and 2 mM acetate. Growth was monitored by measuring the increase in optical density at 600 nm with a Spectronic 401 spectrophotometer (Bioblock). The temperature range for growth was determined without agitation with 20 g NaCl l-1 at pH 6·5. The NaCl range was obtained at 70 °C and pH 6·5 under agitation (150 r.p.m.). To determine the pH range for growth, SRB medium was buffered with 20 mM MES (pH adjusted to 6) or 20 mM PIPES (pH adjusted to 6·7 and 7·2). After autoclaving, these pH values decreased to pH 5·9 (with MES as buffer), pH 6·5 and pH 7 (with PIPES as buffer). The pH ranges from 5·9 to 6·75 (with MES) and 6 to 7 (with PIPES) were obtained by the addition of varying concentrations of NaHCO3. The pH of the media was checked at room temperature after overnight incubation of uninoculated tubes under H2/CO2 at 70 °C.

Under these conditions, strain CIR29812T grew between 55 and 80 °C, with an optimum at 70 °C. No growth was observed at 50 or 82 °C. Growth occurred between 10 and 35 g NaCl l-1, with a growth optimum at 25 g NaCl l-1. No growth was detected after 96 h in media containing 5 and 40 g NaCl l-1. Growth occurred between pH 6 and 6·7 in PIPES buffered medium, with an optimum at approximately pH 6·25. Growth occurred in MES buffered medium from pH 6 to 6·25. Under optimal growth conditions with shaking (150 r.p.m.), the doubling time of strain CIR29812T was around 2 h (maximal OD640 0·11).

The new isolate was a strict anaerobe and was transferred at least six times under strict chemolithoautotrophic conditions, using H2 as the electron donor and sulfate as the electron acceptor. Hydrogen sulfide was produced during growth. Elemental sulfur (1 %), thiosulfate (10 mM), cystine (1 %), nitrate (5 mM), fumarate (10 mM) and sulfite (2 mM) were not used as electron acceptors. CO2 was the sole carbon source used by strain CIR29812T. In the presence of H2/CO2 and sulfate, growth was stimulated by acetate (2 mM), methanol (0·5 %), monomethylamine (0·2 %), glutamate (5 mM), peptone (0·1 %), fumarate (15 mM), tryptone (0·1 %), isobutyrate (5 mM), 3-CH3 butyrate (5 mM), ethanol (10 mM) and propanol (5 mM). In the presence of H2/CO2 and sulfate, growth was not affected by isovalerate (5 mM), glucose (5 mM), fructose (5 mM) or succinate (10 mM), whereas acetate (15 mM), propionate (10 mM), butyrate (10 mM), 2-CH3 butyrate (5 mM) and yeast extract (0·2 %) were slightly inhibitory. Growth was completely inhibited by lactate (15 mM), caprylate (2·5 mM), caproate (5 mM), caprate (2·5 mM), formate (15 mM), malate (10 mM), valerate (5 mM), pyruvate (10 mM) and heptanoate (5 mM). In sulfate-free medium, no fermentative growth was observed with malate, pyruvate or lactate. The strain preferentially used ammonium (5 mM) as the nitrogen source but peptone (0·5 %), nitrate (5 mM) and tryptone (0·1 %) also supported growth.

Unlike the control culture of Desulfovibrio fructosovorans DSM 3604T (Ollivier et al., 1988Go), strain CIR29812T did not contain desulfoviridin (Postgate, 1959Go).

Sensitivity to antibiotics (at 25, 50, 100 and 200 µg ml-1) was tested at 70 °C. Strain CIR29812T was resistant to penicillin and kanamycin (200 µg ml-1) and streptomycin (100 µg ml-1), but was inhibited by tetracycline (50 µg ml-1), ampicillin, chloramphenicol and rifampicin (all at 25 µg ml-1).

Respiratory lipoquinones and polar lipids were extracted from 100 mg of freeze-dried cell material using the two-stage method described by Tindall (1990aGo, b)Go. Respiratory quinones were extracted using methanol/hexane (Tindall, 1990aGo, bGo) and the polar lipids were extracted by adjusting the remaining methanol/0·3 % aqueous NaCl phase (containing the cell debris) to give a choroform/methanol/0·3 % aqueous NaCl mixture (1 : 2 : 0·8, by vol.). The extraction solvent was stirred overnight and the cell debris pelleted by centrifugation. Respiratory lipoquinones were separated into their different classes (menaquinones and ubiquinones) by TLC on silica gel (Macherey-Nagel art. no. 805 023), using hexane/tert-butylmethylether (9 : 1, v/v) as solvent. UV-absorbing bands corresponding to menaquinones or ubiquinones were removed from the plate and further analysed by HPLC. This step was carried out on an LDC Analytical (Thermo Separation Products) HPLC apparatus fitted with a reverse phase column (2 mmx125 mm, 3 µm, RP18; Macherey-Nagel) using methanol/heptane as the eluant. Respiratory lipoquinones were detected at 269 nm.

Examination of the respiratory lipoquinone composition of strain CIR29812T indicated that menaquinones were the sole respiratory quinones present. The major component was a menaquinone with seven isoprenologues, i.e. menaquinone 7 (MK-7). MK-7 had also been identified as the major menaquinone in T. commune and T. thermophilum (Collins & Widdel, 1986Go).

Polar lipids were recovered into the chloroform phase by adjusting the chloroform/methanol/0·3 % aqueous NaCl mixture to a ratio of 1 : 1 : 0·9 (by vol.). They were separated by two-dimensional silica-gel TLC (Macherey-Nagel art. no. 818 135). The first direction was developed in chloroform/methanol/water (65 : 25 : 4, by vol.) and the second was developed in chloroform/methanol/acetic acid/water (80 : 12 : 15 : 4, by vol.). Total lipid material and specific functional groups were detected using dodecamolybdophosphoric acid (total lipids), Zinzadze reagent (phosphate), ninhydrin (free amino groups), periodate-Schiff ({alpha}-glycols), Dragendorff (quaternary nitrogen) and anisaldehyde-sulfuric acid (glycolipids).

The polar lipids of strain CIR29812T were predominantly phospholipids (Fig. 2Go). The two major lipids were identified initially on the basis of their RF values and staining behaviour as phosphatidylinositol and phosphatidylethanolamine. In addition, one of the minor phospholipids was identified as phosphatidylglycerol. Additional phospholipids (PL1, PL2, PL3) were present in small amounts and could not be identified unambiguously. Confirmation of the head-group structures was made by ESI-MS/MS studies, details of which will be reported elsewhere. The lipid composition of T. commune was similar. However, a third phospholipid identified in T. commune was not present in strain CIR29812T. This phospholipid had the RF value and staining behaviour of the phosphatidyl aminopentatetrol, which has also been reported in Hydrogenobacter thermophilus (Yoshino et al., 2001Go), the head-group structure having originally been described in the methanogenic members of the Archaea (Ferrante et al., 1987Go, 1988Go).



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Fig. 2. Two-dimensional thin-layer chromatogram of the polar lipids of strain CIR29812T. All polar lipids were stained with 5 % ethanolic molybdophosphoric acid. Solvents: chloroform/methanol/water (65 : 25 : 4, by vol.), first direction; chloroform/methanol/acetic acid/water (80 : 12 : 15 : 4, by vol.), second direction. PE, phosphatidylethanolamine; PG, phosphatidylglycerol; PI, phosphatidylinositol; PL1, PL2 and PL3, phospholipids of unknown structure.

 
Fatty acids were analysed as the methyl ester derivatives prepared from 10 mg of dry cell material. Cells were subjected to differential hydrolysis in order to detect ester-linked and non-ester-linked (amide-bound) fatty acids (B. J. Tindall, unpublished). Fatty acid methyl esters were analysed by GC using a 0·2 µmx25 m non-polar capillary column and flame-ionization detection. The run conditions were injection and detector port temperature 300 °C, inlet pressure 60 kPa, split ratio 50 : 1, injection volume 1 µl, with a temperature programme from 130 to 310 °C at a rate of 4 °C min-1.

The fatty acids of strain CIR29812T comprised both saturated and unsaturated straight-chain, as well as hydroxylated, fatty acids. The major fatty acids of strain CIR29812T consisted of C18 : 0 (42·7–50·9 %) and C18 : 1 (19·2–23·6 %) (Table I, available from IJSEM Online). By comparison, Langworthy et al. (1983)Go reported the presence of iso-, anteiso- and straight-chain fatty acids in T. commune, a pattern which could be confirmed in this study. Although Langworthy et al. (1983)Go examined the fatty acid composition of the lipid fraction, a re-examination of the fatty acid composition from whole cells confirmed these results, but also indicated the presence of hydroxyl fatty acids (data not shown). We assume that the hydroxyl fatty acids are bound to the cell, perhaps in the form of lipopolysaccharide-bound fatty acids.

For the determination of the G+C content, DNA was isolated after disruption of cells using a French pressure cell (Thermo Spectronic) and purified by hydroxyapatite chromatography (Cashion et al., 1977Go). The DNA was hydrolysed with P1 nuclease and the nucleotides dephosphorylated with bovine alkaline phosphatase (Mesbah et al., 1989Go). The G+C content of the DNA of strain CIR29812T determined by the HPLC method described by Tamaoka & Komagata (1984)Go was 46 mol%.

A total of 1496 nt from the 16S rRNA gene were sequenced as described previously (Götz et al., 2002Go). The sequence was reconfirmed using the Thermo Sequenase TM Primer Cycle Sequencing Kit (Amersham) and the reactions were run on a LI-COR automatic sequencer (model 4200) using the LI-COR BASE IMAGEIR software (Science Tec) for analysis.

Distance and maximum-likelihood analyses (De Soete 1983Go; Olsen et al., 1994Go) (1301 nt were used) revealed that strain CIR29812T clustered with all other members of the family Thermodesulfobacteriaceae and was most closely related to T. hydrogeniphilum (10·3 % distant) (Fig. 3Go).



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Fig. 3. Phylogenetic relationships of Thermodesulfatator indicus (strain CIR29812T) and other members of the family Thermodesulfobacteriaceae, produced by maximum-likelihood analysis. The 16S rRNA gene sequence of strain CIR29812T was aligned with other 16S rRNA gene sequences from the Ribosomal Database Project (Maidak et al., 2001Go) and GenBank. Environmental sequences AF027096 (OPB45) and AF411013 (SRI27) have been retrieved from hot springs in Yellowstone National Park (USA) and in Iceland, respectively (Hugenholtz et al., 1998Go; Skirnisdottir et al., 2000Go). Bar, expected number of changes per sequence position. The numbers at the branch nodes are bootstrap values based on 100 bootstrap resamplings. Only bacteria belonging to the family Thermodesulfobacteriaceae are shown. The tree was generated with Bacillus subtilis (GenBank accession no. K00637), Heliobacterium chlorum (M11212), Escherichia coli (J01695), Flexibacter flexilis (M62794), Thermus thermophilus (X07998), Deinococcus radiodurans (M21413), Thermotoga maritima (M21774), Thermosipho melanesiensis (Z70248), Persephonella marina (AF188332) and Aquifex pyrophilus (M83548), and Methanocaldococcus jannaschii (M59126) as the outgroup.

 
The metabolic and physiological properties of strain CIR29812T are very similar to those of T. hydrogeniphilum SL6T. Contrary to other members of the family Thermodesulfobacteriaceae, both organisms are thermophilic, chemolithoautotrophic, sulfate-reducing bacteria, which are non-fermenting, unable to reduce thiosulfate or sulfite, and require NaCl for growth (Table 1Go). However, their optimal temperature and NaCl range for growth and their resistance to streptomycin and penicillin represent phenotypic characteristics that distinguish these sulfate-reducing chemolithoautotrophs from one another. In addition, the 16S rRNA gene sequences of strain CIR29812T and T. hydrogeniphilum SL6T are very different (10·3 % distance). Moreover, when analysed using the same method (HPLC), a 15 % difference discriminates the G+C content of their DNA. Lastly, the major fatty acids present in strain CIR29812T differed from those of T. commune, the type species of the type genus of the family Thermodesulfobacteriaceae. They were more similar to the fatty acid patterns reported for members of the Aquifex–Hydrogenobacter group (Stöhr et al., 2001Go), although the longer-chain components found in the latter group were not found in strain CIR29812T.


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Table 1. Differentiating characteristics of cultivated members of the family Thermodesulfobacteriaceae

Data were obtained from Zeikus et al. (1983)Go, Rozanova & Pivovarova (1988)Go, Henry et al. (1994)Go, Sonne-Hansen & Ahring (1999)Go, Jeanthon et al. (2002)Go and Kashefi et al. (2002)Go. Electron donors were tested with CO2 as the carbon source. ND, Not determined. Species: 1, strain CIR29812T; 2, T. hydrogeniphilum; 3, G. ferrireducens; 4, T. commune, T. thermophilum and T. hveragerdense.

 
Based on a combination of 16S rRNA, chemotaxonomic and physiological data, we propose that strain CIR29812T be placed into a new genus within the family Thermodesulfobacteriaceae, for which we propose the name Thermodesulfatator, as a new species, Thermodesulfatator indicus, which is the sole and type species of this genus.

Description of Thermodesulfatator gen. nov.
Thermodesulfatator (Ther.mo.de.sul.fa.ta'tor. Gr. masc. n. thermos heat; N.L. n. desulfatator sulfate-reducer; N.L. masc. n. Thermodesulfatator thermophilic sulfate-reducer).

Thermophilic. Strictly anaerobic. Marine. Cells are Gram-negative, rod-shaped (0·8–1 µm long and 0·4–0·5 µm wide) and motile by means of a single polar flagellum. They occur singly, in pairs, in chains of three cells and may form cell aggregates in stationary-phase cultures. Do not form spores. Chemolithoautotrophs growing exclusively with hydrogen as the sole electron donor and sulfate as the sole electron acceptor. 16S rRNA gene sequence comparison differentiates Thermodesulfatator from the other genera of the family Thermodesulfobacteriaceae.

The type species is Thermodesulfatator indicus.

Description of Thermodesulfatator indicus sp. nov.
Thermodesulfatator indicus (in.di'cus. L. adj. indicus referring to the Indian Ocean, from where the strain was isolated).

Gram-negative rods (0·8–1 µm long by 0·4–0·5 µm wide), motile by means of a single polar flagellum. Cells occur singly, in pairs or in chains of three cells in early cultures. Growth occurs between 55 and 80 °C (optimum 70 °C), pH 6 and 6·7 (optimum at about pH 6·25) and in the presence of 10 and 35 g NaCl l-1 (optimum 25 g l-1). Anaerobic. Strictly chemolithoautotrophic using sulfate as electron acceptor and H2 as electron donor. No fermentative metabolism. With H2/CO2 and sulfate, growth is stimulated by methanol, monomethylamine, glutamate, peptone, fumarate, tryptone, isobutyrate, 3-CH3 butyrate, ethanol, propanol and low amounts of acetate. Unable to use sulfur, cystine, thiosulfate, sulfite, fumarate and nitrate as electron acceptor. Ammonium is the preferred nitrogen source. Sensitive to ampicillin, chloramphenicol and rifampicin (25 µg ml-1). Resistant to tetracycline and streptomycin (100 µg ml-1), penicillin and kanamycin (200 µg ml-1). The major lipoquinone is MK-7. Predominant polar lipids are phosphatidylethanolamine and phosphatidylinositol. Small amounts of phosphatidylglycerol and three unknown phospholipids (PL1, PL2, PL3) are detected. Fatty acid profile is mainly composed of C18 : 0 and C18 : 1.

The type strain (CIR29812T=DSM 15286T=JCM 11887T) was isolated from an active hydrothermal sulfide chimney deposit at the Kairei vent field on the Central Indian Ridge. The G+C content of its DNA is 46·0 mol%.


    ACKNOWLEDGEMENTS
 
We are grateful to Bernard Ollivier (IRD, Marseille) for the gift of Desulfovibrio fructosovorans DSM 3604T. Our thanks go also to Manfred Nimtz and Andrea Abrahamik (GBF, Braunschweig) for running and help in the interpretation of the preliminary ESI-MS/MS experiments. We also acknowledge Adelaide Nieguitsila for her help with phenotypic characterization. The work performed at Braunschweig and Plouzané was supported by an INTAS grant (99-1250). The work performed at Plouzané was also supported by a CNRS/Rhône-Poulenc grant, a PRIR (THERMOSHP) and the programme ‘Souchotèque de Bretagne’ from the Conseil Régional de Bretagne. H. M. was supported by a grant from the Ministère de la Recherche. The work was also supported by grants from the National Science Foundation (NSF-OCE9712358 and NSF-OCE0083134).


    REFERENCES
 TOP
 ABSTRACT
 MAIN TEXT
 REFERENCES
 
Boone, D. R., Johnson, R. L. & Lui, Y. (1989). Diffusion of the interspecies electron carriers H2 and formate in methanogenic ecosystems and its implications in the measurement of Km for H2 or formate uptake. Appl Environ Microbiol 55, 1735–1741.[Abstract/Free Full Text]

Cashion, P., Holder-Franklin, M. A., McCully, J. & Franklin, M. (1977). A rapid method for the base ratio determination of bacterial DNA. Anal Biochem 81, 461–466.[CrossRef][Medline]

Collins, M. D. & Widdel, F. (1986). Respiratory quinones of sulfate-reducing and sulphur-reducing bacteria: a systematic investigation. Syst Appl Microbiol 8, 8–18.

DeSoete, G. (1983). A least squares algorithm for fitting additive trees to proximity data. Psychometrika 48, 621–626.[CrossRef]

Ferrante, G., Ekiel, I. & Sprott, G. D. (1987). Structures of diether lipids of Methanospirillum hungatei containing novel head groups N,N-dimethylamino- and N,N,N-trimethylaminopentanetetrol. Biochim Biophys Acta 921, 281–291.

Ferrante, G., Ekiel, I., Patel, G. B. & Sprott, D. (1988). Structure of the major polar lipids isolated from the aceticlastic methanogen, Methanothrix concilii GP6. Biochim Biophys Acta 963, 162–172.

Garrity, G. M. & Holt, J. G. (2001). Phylum BIII. Thermodesulfobacteria phy. nov. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 1, pp. 389–393. Edited by D. R. Boone, R. W. Castenholz & G. M. Garrity. New York: Springer.

Götz, D., Banta, A., Beveridge, T. J., Rushdi, A. I., Simoneit, B. R. T. & Reysenbach, A.-L. (2002). Persephonella marina gen. nov., sp. nov. and Persephonella guaymasensis sp. nov., two novel, thermophilic, hydrogen-oxidizing microaerophiles from deep-sea hydrothermal vents. Int J Syst Evol Microbiol 52, 1349–1359.[Abstract]

Henry, E. A., Devereux, R., Maki, J. S., Gilmour, C. C., Woese, C. R., Mandelco, L., Schauder, R., Remsen, C. C. & Mitchell, R. (1994). Characterization of a new thermophilic sulfate-reducing bacterium Thermodesulfovibrio yellowstonii, gen. nov. and sp. nov.: its phylogenetic relationship to Thermodesulfobacterium commune and their origins deep within the bacterial domain. Arch Microbiol 161, 62–69.[Medline]

Hugenholtz, P., Pitulle, C., Herschberger, K. L. & Pace, N. R. (1998). Novel division level bacterial diversity in a Yellowstone hot spring. J Bacteriol 180, 366–376.[Abstract/Free Full Text]

Jeanthon, C., L'Haridon, S., Cueff, V., Banta, A., Reysenbach, A.-L. & Prieur, D. (2002). Thermodesulfobacterium hydrogeniphilum sp. nov., a thermophilic, chemolithoautotrophic, sulfate-reducing bacterium isolated from a deep-sea hydrothermal vent at Guaymas Basin, and emendation of the genus Thermodesulfobacterium. Int J Syst Evol Microbiol 52, 765–772.[Abstract]

Judicial Commission of the International Committee on Systematics of Prokaryotes (2003). Valid publication of the genus name Thermodesulfobacterium and the species names Thermodesulfobacterium commune (Zeikus et al. 1983Go) and Thermodesulfobacterium thermophilum (ex Desulfovibrio thermophilus Rozanova and Khudyakova 1974Go). Opinion 71. Int J Syst Evol Microbiol 53, 927.[Abstract/Free Full Text]

Kashefi, K., Holmes, D. E., Reysenbach, A. L. & Lovley, D. R. (2002). Use of Fe(III) as an electron acceptor to recover previously uncultured hyperthermophiles: isolation and characterization of Geothermobacterium ferrireducens gen. nov., sp. nov. Appl Environ Microbiol 68, 1735–1742.[Abstract/Free Full Text]

Langworthy, T. A., Hölzer, G., Zeikus, J. G. & Tornabene, T. G. (1983). Iso- and anteiso-branched glycerol diethers of the thermophilic anaerobe Thermodesulfotobacterium commune. Syst Appl Microbiol 4, 3–17.

Maidak, B. L., Cole, J. R., Lilburn, T. G. & 7 other authors (2001). The RDP-II (Ribosomal Database Project). Nucleic Acids Res 29, 173–174.[Abstract/Free Full Text]

Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159–167.

Ollivier, B., Cord-Ruwisch, R., Hatchikian, E. C. & Garcia, J. L. (1988). Characterization of Desulfovibrio fructosovorans sp. nov. Arch Microbiol 149, 447–450.[CrossRef]

Olsen, G. J., Matsuda, H., Hagstrom, R. & Overbeek, R. (1994). FASTDNAML: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood. Comput Appl Biosci 10, 41–48.[Abstract/Free Full Text]

Postgate, J. (1959). A diagnostic reaction of Desulphovibrio desulphuricans. Nature 14, 481–482.

Rozanova, E. P. & Khudyakova, A. I. (1974). A new non-spore-forming thermophilic sulfate-reducing organism, Desulfovibrio thermophilus nov. sp. Microbiology (English translation of Mikrobiologiya) 43, 908–912.

Rozanova, E. P. & Pivovarova, T. A. (1988). Reclassification of Desulfovibrio thermophilus (Rozanova & Khudyakova 1974Go). Microbiology (English translation of Mikrobiologiya) 57, 102–106.

Skirnisdottir, S., Hreggvidsson, G. O., Hjorleifsdottir, S., Marteinsson, V. T., Petursdottir, S. K., Holst, O. & Kristjansson, J. K. (2000). Influence of sulfide and temperature on species composition and community structure of hot spring microbial mats. Appl Environ Microbiol 66, 2835–2841.[Abstract/Free Full Text]

Sonne-Hansen, J. & Ahring, B. K. (1999). Thermodesulfobacterium hveragerdense sp. nov., and Thermodesulfovibrio islandicus sp. nov., two thermophilic sulfate reducing bacteria isolated from a Icelandic hot spring. Syst Appl Microbiol 22, 559–564.[Medline]

Stöhr, R., Waberski, A., Völker, H., Tindall, B. J. & Thomm, M. (2001). Hydrogenothermus marinus gen. nov., sp. nov., a novel thermophilic hydrogen-oxidizing bacterium, recognition of Calderobacterium hydrogenophilum as a member of the genus Hydrogenobacter and proposal of the reclassification of Hydrogenobacter acidophilus as Hydrogenobaculum acidophilum gen. nov., comb. nov., in the phylum ‘Hydrogenobacter/Aquifex’. Int J Syst Evol Microbiol 51, 1853–1862.[Abstract]

Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reverse-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125–128.

Tindall, B. J. (1990a). A comparative study of the lipid composition of Halobacterium saccharovorum from various sources. Syst Appl Microbiol 13, 128–130.

Tindall, B. J. (1990b). Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 66, 199–202.

Van Dover, C. L., Humphris, S. E., Fornari, D. & 24 other authors (2001). Biogeography and ecological setting of Indian Ocean hydrothermal vents. Science 294, 818–823.[Abstract/Free Full Text]

Widdel, F. & Bak, F. (1992). Gram-negative mesophilic sulfate-reducing bacteria. In The Prokaryotes, 2nd edn, pp. 3352–3378. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K. H. Schleifer. New York: Springer.

Yoshino, J., Sugiyama, Y., Sakuda, S., Kodama, T., Nagasawa, H., Ishii, M. & Igarashi, Y. (2001). Chemical structure of a novel aminophospholipid from Hydrogenobacter thermophilus strain TK-6. J Bacteriol 183, 6302–6304.[Abstract/Free Full Text]

Zeikus, J. G., Dawson, M. A., Thompson, T. E., Ingvorsen, K. & Hatchikian, E. C. (1983). Microbial ecology of volcanic sulphidogenesis: isolation and characterization of Thermodesulfobacterium commune gen. nov. and sp. nov. J Gen Microbiol 129, 1159–1169.




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