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School of Biological Sciences, Seoul National University, 56-1 Shillim-dong, Kwanak-gu, Seoul 151-742, Republic of Korea
Correspondence
Jongsik Chun
chun{at}snu.ac.kr
| ABSTRACT |
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Published online ahead of print on 18 July 2003 as DOI 10.1099/ijs.0.02861-0.
The GenBank accession numbers for 16S rDNA sequences of strains JC2050T, JC2051T and JC2052T are respectively AY264838, AY264839 and AY264840.
| INTRODUCTION |
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| METHODS |
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Molecular systematics.
Bacterial DNA preparation, PCR amplification and 16S rDNA sequencing were carried out as described previously (Chun & Goodfellow, 1995
). The resultant sequences were aligned manually against sequences obtained from GenBank. Phylogenetic trees were inferred using the FitchMargoliash (Fitch & Margoliash, 1967
), maximum-likelihood (Felsenstein, 1993
), maximum-parsimony (Fitch, 1972
) and neighbour-joining (Saitou & Nei, 1987
) methods. Evolutionary distance matrices were generated according to Jukes & Cantor (1969)
. The resultant tree topologies were evaluated in bootstrap analyses (Felsenstein, 1985
) based on 1000 resamplings. Alignment and phylogenetic analyses were carried out using the programs PHYDIT (available at http://plaza.snu.ac.kr/
jchun/phydit/) and PAUP 4.0 (Swofford, 1998
) as described previously (Chun et al., 2000
).
Cultural, morphological and physiological properties.
Cultural characteristics were studied using several bacteriological growth media: CY (3 g casitone, 1 g yeast extract, 1 g CaCl2.2H2O, 40 g sea salts and 15 g agar in 1000 ml distilled water), CSY-3 (Sawabe et al., 1998
); 1/5 LBM (Suzuki et al., 2001
), MA, SMM (Shioi's marine medium; Shiba, 1992
) and YTSS (Gonzalez et al., 1997
). Growth at various temperatures was tested over the range 550 °C at intervals of 5 °C using MA. Growth at different pH values (414) was examined on MA. Growth in NaCl (012 % at 0·5 % intervals) or sea salts (015 % at 0·5 % intervals) was tested on CSY-3.
Cellular morphology was examined by phase-contrast microscopy and SEM after growth on MA at 30 °C. Gliding motility was observed by direct microscopic examination of the edge of colonies and motility was observed by the hanging-drop technique for cells in exponential phase in CY broth.
Carbon-source utilization was tested on 96-well tissue-culture microplates as described by Gosink et al. (1998)
. Strain JC2051T was able to grow on Baumann's basal medium (BM; Baumann et al., 1971
) without added growth factors, but strains JC2050T and JC2052T were unable to grow on BM without trace elements and vitamins. Thus, BM, supplemented with 2 % (v/v) Hutner's mineral base (Cohen-Bazire et al., 1957
) and 1 % (v/v) vitamin solution (Staley, 1968
), was used for carbon-source testing.
-Galactosidase activity was determined by streaking cultures onto MA agar plates supplemented with 0·1 mM IPTG and 20 µg X-Gal ml-1 (Gosink et al., 1998
). Other physiological and biochemical properties were tested using standard procedures as described previously (Yi et al., 2003
).
Chemotaxonomy.
Chemotaxonomic characteristics were determined in cells grown at 30 °C for 2 days on MA or in MB (marine broth 2216; Difco). The presence of flexirubin-like pigments was tested by measuring the absorbance spectrum of an ethanol and alkaline-ethanol extract of lysed cells (Weeks, 1981
). Fatty acid methyl ester analysis was performed by GLC according to the instructions of the Microbial Identification system (MIDI). Isoprenoid quinones were isolated according to Minnikin et al. (1984)
and analysed using HPLC as described by Collins (1985)
. G+C content (mol%) was determined by HPLC analysis of deoxyribonucleosides as described by Mesbah et al. (1989)
using a reverse-phase column (Supelcosil LC-18-S; Supelco).
| RESULTS AND DISCUSSION |
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Morphological properties
Colonies of strains JC2050T and JC2052T were circular, convex, glistening, non-luminescent, butyraceous, opaque and orange with entire margins on agar plates. Colonies of strain JC2051T were slightly different, i.e. flat, translucent and reddish-orange. Cells were rod-shaped with rounded ends (Fig. 2
), non-flagellated and non-motile. Gliding motility was not observed on agar plates, nor was motility observed in broth media. Spore formation was not observed.
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9c, 17 : 0 iso 3-OH and mixture of 16 : 1
7c and 15 : 0 iso 2-OH (Table 2
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Based on the polyphasic data presented in this study, the name Hongiella gen. nov. is proposed for the getbol isolates, with three novel species, Hongiella mannitolivorans sp. nov. for strain JC2050T, Hongiella halophila sp. nov. for strain JC2051T and Hongiella ornithinivorans sp. nov for strain JC2052T.
Description of Hongiella gen. nov.
Hongiella (Hong.i.el'la. N.L. dim. fem. n. Hongiella named after Soon-Woo Hong, a Korean microbiologist who devoted his life to the study of soil micro-organisms).
Gram-negative, oxidase- and catalase-positive. Strictly aerobic, chemoheterotrophic and mesophilic. Grows optimally at neutral pH. Cells are rod-shaped with rounded ends, non-flagellated and non-motile. Colonies are circular, entirely margined, glistening, butyraceous and orange on MA and do not glide. Abundant growth occurs on CSY-3, MA and SMM media. Spores are not formed. Flexirubin-type pigment is absent. The major isoprenoid quinone is MK-7. The predominant cellular fatty acids are 15 : 0 iso (2329 %), iso 17 : 1
9c (69 %), 17 : 0 iso 3-OH (811 %) and a mixture of 16 : 1
7c and 15 : 0 iso 2-OH (1421 %). DNA G+C content is 3742 mol%. Many phenotypic characters differentiate this genus from related taxa (Table 3
). Phylogenetically, the genus belongs to the family Cytophagaceae. The type species is Hongiella mannitolivorans.
Description of Hongiella mannitolivorans sp. nov.
Hongiella mannitolivorans (man.ni.to.li.vo'rans. N.L. n. mannitolum mannitol; L. v. vorare to devour; N.L. part. adj. mannitolivorans utilizing mannitol).
Cells are approximately 1·11·7x0·40·5 µm. Colonies are convex, opaque and orange on MA. Optimal growth is observed at 3540 °C, pH 7 and 1 % NaCl or 0·51·5 % artificial sea salts. Grows without NaCl or sea salts. Reduces nitrate to nitrite. Produces amylase, DNase and gelatinase, but not Tweenase. Detailed physiological and biochemical characteristics are given in Table 1
. Maximum absorption of pigment occurs at 480 nm. Cellular fatty acid composition is given in Table 2
. The type strain is JC2050T (=IMSNU 14012T=KCTC 12050T=DSM 15301T); the DNA G+C content of the type strain is 42 mol%. Isolated from sediment of getbol, the Korean tidal flat.
Description of Hongiella halophila sp. nov.
Hongiella halophila (ha.lo'phi.la. Gr. n. hals, halos salt; Gr. adj. philos loving; N.L. fem. adj. halophila salt-loving).
Cells are approximately 1·01·8x0·30·5 µm. Colonies are flat, translucent and reddish-orange on MA. Optimal growth is observed at 35 °C, pH 7 and 5 % NaCl or 12 % artificial sea salts. Does not grow without NaCl or sea salts. Nitrate is not reduced to nitrite. Produces gelatinase and Tweenase, but not amylase or DNase. Detailed physiological and biochemical characteristics are given in Table 1
. Maximum absorption of pigment occurs at 475 nm. Cellular fatty acid composition is given in Table 2
. The type strain is JC2051T (=IMSNU 14013T=KCTC 12051T=DSM 15292T); the DNA G+C content of the type strain is 37 mol%. Isolated from sediment of getbol, the Korean tidal flat.
Description of Hongiella ornithinivorans sp. nov.
Hongiella ornithinivorans (or'ni.thi.ni.vo'rans. N.L. n. ornithinum ornithine; L. v. vorare to devour; N.L. part. adj. ornithinivorans utilizing ornithine).
Cells are approximately 0·82·6x0·30·4 µm. Colonies are convex, opaque and orange on MA. Optimal growth is observed at 3540 °C, pH 7 and 1 % NaCl or 1·02·5 % artificial sea salts. Grows without NaCl or sea salts. Nitrate is not reduced to nitrite. Produces amylase, DNase, gelatinase (weakly) and Tweenase. Detailed physiological and biochemical characteristics are given in Table 1
. Maximum absorption of pigment occurs at 480 nm. Cellular fatty acid composition is given in Table 2
. The type strain is JC2052T (=IMSNU 14014T=KCTC 12052T=DSM 15282T); the DNA G+C content of the type strain is 38 mol%. Isolated from sediment of getbol, the Korean tidal flat.
| ACKNOWLEDGEMENTS |
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