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1 Departamento de Patología Animal I (Sanidad Animal), Facultad de Veterinaria, Universidad Complutense, 28040 Madrid, Spain
2 School of Food Biosciences, University of Reading, Reading RG6 6AP, UK
Correspondence
J. F. Fernández-Garayzábal
garayzab{at}vet.sim.ucm.es
| ABSTRACT |
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Published online ahead of print on 13 June 2003 as DOI 10.1099/ijs.0.02645-0.
The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of Corynebacterium suicordis strain CECT 5724T is AJ504424.
A full version of the phylogenetic tree is available as supplementary material in IJSEM Online.
| MAIN TEXT |
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Sources from which bacterial strains were isolated are given in Table 1
. Pigs were between 3 and 15 days old and were kept under intensive management conditions. All strains were isolated on Columbia blood agar plates (bioMérieux) and incubated for 48 h at 37 °C under aerobic and anaerobic conditions. Strains were characterized biochemically by using the API Coryne (version 2.0), API 50 CH and API ZYM systems (bioMérieux) according to the manufacturer's instructions. API 50 CH strips were incubated for 48 h at 37 °C. The CAMP (ChristieAtkinsMunch-Petersen) test with Staphylococcus aureus ATCC 25923 was determined according to standard procedures (Funke et al., 1997
). Lipophilic requirements were determined by growing the isolates on brain heart infusion agar supplemented with 1 % Tween 80, in comparison with brain heart infusion agar that lacked lipid supplementation. Cell-wall murein was prepared by mechanical disruption of cells and complete acid hydrolysates were analysed as described by Schleifer & Kandler (1972)
. Fatty acid methyl esters were prepared and analysed as described by Kämpfer & Kroppenstedt (1996)
. The presence of mycolic acids was investigated by GLC analysis of trimethylsilylated derivatives (Klatte et al., 1994
). Comparative 16S rRNA gene sequence analyses were performed as described previously (Vela et al., 2002
). The closest known relatives of the new isolates were determined by performing database searches. A phylogenetic tree was constructed according to the neighbour-joining method with the program NEIGHBOR (Felsenstein, 1989
). Stability of the groupings was estimated by bootstrap analysis (500 replications) by using the programs DNABOOT, DNADIST, NEIGHBOR and CONSENSE (Felsenstein, 1989
).
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-glucosidase, but no activity was detected for leucine arylamidase, lipase C14, alkaline phosphatase, acid phosphatase, pyrrolidonyl arylamidase,
-glucosidase,
-glucuronidase,
-mannosidase,
-galactosidase,
-galactosidase,
-fucosidase, chymotrypsin, trypsin or valine arylamidase. To further investigate the identity of this group of organisms, comparative 16S rRNA gene sequencing was performed. Almost-complete 16S rRNA gene sequences (>1400 nt) of two representative strains of the group (P30/02 and P591/01) and approximately 1000 nt of the 16S rRNA gene sequence of the other 11 strains were determined and found to display 99·8100 % sequence similarity to each other. Sequence searches of GenBank/EMBL revealed that the 13 isolates displayed 99·899·9 % 16S rRNA gene sequence similarity to the type strain of Corynebacterium testudinoris. This result was found to be consistent with the overall biochemical and physiological characteristics of this species (Collins et al., 2001b
The six remaining strains recovered from pigs (designated P494/01, P496/01, P499/01, P500/01, P502/01 and P81/02T) grew on Columbia sheep blood agar, forming small (diameter after 48 h incubation, <12 mm), whitish, circular, smooth colonies and were CAMP test-negative. These strains hydrolysed urea, but not aesculin or gelatin. They did not reduce nitrate and gave positive reactions for pyrazinamidase and alkaline phosphatase. No activity was detected for pyrrolidonyl arylamidase,
-glucuronidase,
-galactosidase or
-glucosidase. None of the strains produced acid from glucose, maltose, ribose, lactose, sucrose, glycogen or mannitol. They produced API Coryne profile 2101004, corresponding to a good identification of Corynebacterium urealyticum. However, this species does not grow anaerobically (Funke et al., 1997
), whereas the six swine isolates were able to grow under anaerobic conditions. The six unknown isolates were subjected to further biochemical characterization by using the API 50 CH and API ZYM systems. None of the strains produced acid from glycerol, erythritol, D-arabinose, L-arabinose, D-xylose, L-xylose, inositol, adonitol, methyl
-xyloside, galactose, D-fructose, D-mannose, L-sorbose, rhamnose, methyl
-D-mannoside, methyl
-D-glucoside, sorbitol, N-acetyl-
-glucosamine, amygdalin, arbutin, salicin, cellobiose, melibiose, trehalose, inulin, melezitose, D-raffinose, xylitol,
-gentibiose, D-turanose, D-lyxose, D-tagatose, D-fucose, L-fucose, D-arabitol, L-arabitol, 5-ketogluconate or 2-ketogluconate. The six strains gave positive reactions for esterase C4, ester lipase C8, acid phosphatase and naphthol-AS-BI-phosphohydrolase, but no activity was detected for lipase C14, leucine arylamidase, valine arylamidase, cystine arylamidase, trypsin, chymotrypsin,
-galactosidase,
-glucosidase,
-mannosidase or
-fucosidase. To further clarify the taxonomic position of this second group of strains, their 16S rRNA gene sequences were investigated. All six strains were highly genetically related to each other, exhibiting 99·8100 % sequence similarity (based on a comparison of 1000 bases). The almost-complete 16S rRNA gene sequence (>1400 nt) of a representative strain (P81/02T) was determined and searches of GenBank/EMBL revealed that its nearest relatives were Corynebacterium species. A tree constructed by using the neighbour-joining method, depicting the phylogenetic position of the second group of swine isolates within the genus Corynebacterium, is shown in Fig. 1
. The unknown bacterium (as exemplified by strain P81/02T=CECT 5724T) formed a distinct subline within the genus Corynebacterium, which was associated with a small subcluster of species that included Corynebacterium auriscanis, Corynebacterium falsenii, Corynebacterium jeikeium and C. urealyticum. Pairwise sequence comparisons revealed similarities of 95·8, 95·2, 95·2 and 94·3 %, respectively, with the aforementioned species. Other corynebacterial species displayed substantially lower levels of similarity (data not shown). 16S rRNA gene sequence divergence values of 3 % or more are now generally recognized to demonstrate that organisms are unrelated at the species level (Stackebrandt & Goebel, 1994
). Biochemical distinctiveness of the unidentified pig bacterium, in concert with the observed 4 % or greater sequence divergence from all currently defined Corynebacterium species, clearly indicates that the bacterium merits novel species status. We therefore propose that the six strains from pigs should be classified as Corynebacterium suicordis sp. nov. Tests that are useful for differentiation of C. suicordis from its nearest phylogenetic relatives are shown in Table 2
. Several species of Corynebacterium have been associated with heart infections in humans (Malik & Johari, 1995
; Ojeda-Vargas et al., 2000
; Knox & Holmes, 2002
). However, no conclusion concerning the clinical significance of C. suicordis as an aetiological agent of pericarditis in pigs can be drawn from the present study, as only one of the isolates was recovered in pure culture. The formal description of C. suicordis and the availability of tests to facilitate its identification will aid the recognition of this species by clinical laboratories in the future and improve knowledge of its distribution and possible association with disease.
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Cells are Gram-positive, non-motile, non-spore-forming rods. Colonies are whitish, circular, smooth, entire and 12 mm in diameter after 48 h incubation at 37 °C on sheep blood agar. Facultatively anaerobic, catalase-positive and oxidase-negative. Non-haemolytic, CAMP-negative and non-lipophilic. Nitrate is not reduced. Acid is not produced from D-glucose, maltose, lactose, ribose, sucrose, glycogen, mannitol, glycerol, erythritol, D-arabinose, L-arabinose, D-xylose, L-xylose, adonitol, inositol, methyl
-xyloside, galactose, D-fructose, D-mannose, L-sorbose, rhamnose, methyl
-D-mannoside, methyl
-D-glucoside, sorbitol, N-acetyl-
-glucosamine, amygdalin, arbutin, salicin, cellobiose, melibiose, trehalose, inulin, melezitose, D-raffinose, xylitol,
-gentibiose, D-turanose, D-lyxose, D-tagatose, D-fucose, L-fucose, D-arabitol, L-arabitol, 5-ketogluconate or 2-ketogluconate. Urea is hydrolysed, but aesculin and gelatin are not. Activities for pyrazinamidase, esterase C4, ester lipase C8, alkaline phosphatase, acid phosphatase and naphthol-AS-BI-phosphohydrolase are detected. No activity is detected for pyrrolidonyl arylamidase,
-glucuronidase,
-galactosidase,
-glucosidase, lipase C14, leucine arylamidase, valine arylamidase, cystine arylamidase, trypsin, chymotrypsin,
-galactosidase,
-glucosidase,
-mannosidase or
-fucosidase. Cell-wall murein is based on meso-diaminopimelic acid. Corynomycolic acids are present (C28C36). Long-chain cellular acids are of the straight-chain saturated and monounsaturated types, with C16 : 0, C18 : 0 and C18 : 1
9c predominating.
The type strain is P81/02T (=CECT 5724T=CCUG 46963T). Isolated from the heart of pigs.
| ACKNOWLEDGEMENTS |
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| REFERENCES |
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Collins, M. D., Hoyles, L., Lawson, P. A., Falsen, E., Robson, R. L. & Foster, G. (1999). Phenotypic and phylogenetic characterization of a new Corynebacterium species from dogs: description of Corynebacterium auriscanis sp. nov. J Clin Microbiol 37, 34433447.
Collins, M. D., Hoyles, L., Foster, G., Sjödén, B. & Falsen, E. (2001a). Corynebacterium capitovis sp. nov., from a sheep. Int J Syst Evol Microbiol 51, 857860.[Abstract]
Collins, M. D., Hoyles, L., Hutson, R. A., Foster, G. & Falsen, E. (2001b). Corynebacterium testudinoris sp. nov., from a tortoise, and Corynebacterium felinum sp. nov., from a Scottish wild cat. Int J Syst Evol Microbiol 51, 13491352.[Abstract]
Felsenstein, J. (1989). PHYLIP Phylogeny inference package (version 3.2). Cladistics 5, 164166.
Fernández-Garayzábal, J. F., Collins, M. D., Hutson, R. A., Fernández, E., Monasterio, R., Marco, J. & Domínguez, L. (1997). Corynebacterium mastitidis sp. nov., isolated from milk of sheep with subclinical mastitis. Int J Syst Bacteriol 47, 10821085.
Fernández-Garayzábal, J. F., Collins, M. D., Hutson, R. A., Gonzalez, I., Fernández, E. & Domínguez, L. (1998). Corynebacterium camporealensis sp. nov., associated with subclinical mastitis in sheep. Int J Syst Bacteriol 48, 463468.
Funke, G., Lawson, P. A., Bernard, K. A. & Collins, M. D. (1996). Most Corynebacterium xerosis strains identified in the routine clinical laboratory correspond to Corynebacterium amycolatum. J Clin Microbiol 34, 11241128.[Abstract]
Funke, G., von Graevenitz, A., Clarridge, J. E., III & Bernard, K. A. (1997). Clinical microbiology of coryneform bacteria. Clin Microbiol Rev 10, 125159.[Abstract]
Funke, G., Osorio, C. R., Frei, R., Riegel, P. & Collins, M. D. (1998). Corynebacterium confusum sp. nov., isolated from human clinical specimens. Int J Syst Bacteriol 48, 12911296.
Goyache, J., Vela, A. I., Collins, M. D. & 7 other authors (2003). Corynebacterium spheniscorum sp. nov., isolated from the cloacae of wild penguins. Int J Syst Evol Microbiol 53, 4346.
Kämpfer, P. & Kroppenstedt, R. M. (1996). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 9891005.
Klatte, S., Kroppenstedt, R. M. & Rainey, F. A. (1994). Rhodococcus opacus sp. nov., an unusual nutritionally versatile Rhodococcus-species. Syst Appl Microbiol 17, 355360.
Knox, K. L. & Holmes, A. H. (2002). Nosocomial endocarditis caused by Corynebacterium amycolatum and other nondiphtheriae corynebacteria. Emerg Infect Dis 8, 9799.[Medline]
Malik, A. S. & Johari, M. R. (1995). Pneumonia, pericarditis, and endocarditis in a child with Corynebacterium xerosis septicemia. Clin Infect Dis 20, 191192.
Martínez-Martínez, L., Suárez, A. I., Winstanley, J., Ortega, M. C. & Bernard, K. (1995). Phenotypic characteristics of 31 strains of Corynebacterium striatum isolated from clinical samples. J Clin Microbiol 33, 24582461.[Abstract]
Ojeda-Vargas, M., González-Fernández, M. A., Romero, D., Cedrés, A. & Monzón-Moreno, C. (2000). Pericarditis caused by Corynebacterium urealyticum. Clin Microbiol Infect 6, 560561.[Medline]
Renaud, F. N. R., Aubel, D., Riegel, P., Meugnier, H. & Bollet, C. (2001). Corynebacterium freneyi sp. nov.,
-glucosidase-positive strains related to Corynebacterium xerosis. Int J Syst Evol Microbiol 51, 17231728.[Abstract]
Schleifer, K. H. & Kandler, O. (1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36, 407477.
Shukla, K. S., Vevea, D. N., Frank, D. N., Pace, N. R. & Reed, K. D. (2001). Isolation and characterization of a black-pigmented Corynebacterium sp. from a woman with spontaneous abortion. J Clin Microbiol 39, 11091113.
Sjödén, B., Funke, G., Izquierdo, A., Akervall, E. & Collins, M. D. (1998). Description of some coryneform bacteria isolated from human clinical specimens as Corynebacterium falsenii sp. nov. Int J Syst Bacteriol 48, 6974.
Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846849.
Takeuchi, M., Sakane, T., Nihira, T., Yamada, Y. & Imai, K. (1999). Corynebacterium terpenotabidum sp. nov., a bacterium capable of degrading squalene. Int J Syst Bacteriol 49, 223229.
Tanner, M. A., Shoskes, D., Shahed, A. & Pace, N. R. (1999). Prevalence of corynebacterial 16S rRNA sequences in patients with bacterial and "nonbacterial" prostatitis. J Clin Microbiol 37, 18631870.
Vela, A. I., Fernández, E., Lawson, P. A., Latre, M. V., Falsen, E., Domínguez, L., Collins, M. D. & Fernández-Garayzábal, J. F. (2002). Streptococcus entericus sp. nov., isolated from cattle intestine. Int J Syst Evol Microbiol 52, 665669.[Abstract]
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