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1 Department of Applied Chemistry and Microbiology, PO Box 56, FIN-00014 University of Helsinki, Helsinki, Finland
2 German Collection of Micro-organisms and Cell Cultures, Mascheroder Weg 1b, D-38124 Braunschweig, Germany
3 Institut für Angewandte Mikrobiologie, Justus-Liebig-Universität Giessen, Heinrich-Buff-Ring 2632, D-35392 Giessen, Germany
4 Department of Biological Sciences, 202 Life Sciences Building, Louisiana State University, Baton Rouge, LA 70803, USA
5 Electronics Production Technology, PO Box 3000, FIN-02015 Helsinki University of Technology, Helsinki, Finland
Correspondence
Mirja Salkinoja-Salonen
mirja.salkinoja-salonen{at}helsinki.fi
| ABSTRACT |
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Detailed fatty acid compositions of individual novel isolates and P. polymyxa strains are available as supplementary material in IJSEM Online.
| MAIN TEXT |
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The novel isolates IS 1T, IS 2, IS 3, IS 4 and IS 5 were obtained by plating homogenized food-packaging paperboard as described by TAPPI (1990)
on brain heart infusion (BHI) agar (Difco) at 28 °C. The following reference strains were used: Paenibacillus azotofixans DSM 5976T, Paenibacillus borealis KK19T (provided by S. Elo), Paenibacillus sp. KM8 (provided by S. Elo), Paenibacillus campinasensis KCTC 0364BPT (provided by J.-H. Yoon), Paenibacillus durus DSM 1735T, Paenibacillus lautus LMG 11157T and Paenibacillus polymyxa strains DSM 36T, ATCC 7047, NRRL B-369, NRRL B-375 and NRRL B-478.
Biochemical properties of strains grown on nutrient agar were determined as described by Elo et al. (2001)
and by API 20NE and API 50CH (bioMérieux). Haemolysis was assayed on bovine blood agar plates prepared from tryptic soy agar (TSA) base (BBL) by adding 5 % (v/v) defibrinated bovine blood. Defibrination was achieved by adding 0·5 % trisodium citrate dihydrate to the blood. Plates were read after 1 and 4 days at 28 °C (Smibert & Krieg, 1994
). Cyclodextrin production from starch was tested as described by Pirttijärvi et al. (2001)
and growth on cellulose, hemicellulose or xylan as sole carbon source (10 g l-1) was tested on R2A medium (Clesceri et al., 1998
) without glucose at 28 °C. Anaerobic growth was tested on BHI at 37 °C for 5 days (10 % H2, 10 % CO2, 80 % N2).
Whole-cell fatty acid and G+C content analysis and ribotyping were done as described by Elo et al. (2001)
. For ribotyping, a molecular size marker mixture (1·1, 2·2, 3·2, 6·5, 9·6 and 48·0 kbp) was run in slots adjacent to each sample slot.
Genomic DNA extraction, PCR-mediated amplification of the rRNA gene and purification of PCR products were carried out as described previously (Rainey et al., 1996
). Purified PCR products were sequenced with Taq Dyedeoxy terminator cycle sequencing kits (Applied Biosystems) according to the manufacturer's protocol. An Applied Biosystems 373A DNA sequencer was used for electrophoresis of sequence reaction products. The ae2 editor (Maidak et al., 1999
) was used to align the 16S rRNA gene sequence determined in this study against 16S rRNA gene sequences of representatives of Paenibacillus species available from public databases. Pairwise evolutionary distances were computed using the correction of Jukes & Cantor (1969)
. The phylogenetic dendrogram was reconstructed from a distance matrix using the neighbour-joining treeing algorithm in the PHYLIP package (Felsenstein, 1993
).
For negative staining, a 1-day-old culture grown on TSA (Difco) at 37 °C was allowed to attach onto the carbon grid for 1 min and stained with 1 % phosphotungstic acid (pH 7·3) for 25 s. The grids were inspected on a JEOL 1200 EX TEM at an operating voltage of 60 kV. Cells grown on BHI plates for 4 days at 28 °C were examined by TEM of thin sections, cells grown on TSA plates for 4 days at 28 °C were observed by field emission SEM as described by Elo et al. (2001)
and spores were studied by Hitachi S-4300 field emission SEM or JEOL JSM-6335F field emission SEM; voltages are given in the figure legends.
The Paenibacillus isolates originated from food-packaging paperboards for which the heterotrophic plate count was high in quality control analyses. They represent the main (>90 %) contaminant in paperboards and stored pulps containing ground wood. Vegetative cells were rod-shaped, 0·60·8x2·55·0 µm. Young cells stained Gram-positive and were peritrichously flagellated (Fig. 1a
). A thin section of vegetative cells showed S-layer-like material being shed from the cells (Fig. 1b
). Thin sections of mature spores of the paperboard isolates showed six to seven spikes' on the surface (Fig. 1c
), similar to spores of P. polymyxa (Murphy & Campbell, 1969
) and P. borealis (Elo et al., 2001
). Field emission SEMs (Fig. 2a, b
) reveal that the spikes were ribs ornamenting the spore surface. The ribs connected the poles of the spore (Fig. 2a
). The rib pattern of the novel isolates was more similar to spores of the type strain of P. polymyxa (not shown in Fig. 2
) than to those of P. borealis, in which the ornaments have a honeycomb appearance and are distributed uniformly over the spore (Elo et al., 2001
). The isolates produced ellipsoidal spores in swollen sporangia in the terminal region of the cell (Fig. 1c
). The spores visible in Fig. 2(a, b)
were covered with a slimy looking material, removable from the spores with saline-peptone diluent (0·85 % NaCl, 0·1 % meat peptone) (Fig. 2c
). Pilus-like appendages were observed on spores as well as on vegetative cells (Fig. 2a
). Appendages of similar morphology have been described for spores of Bacillus cereus (Kozuka & Tochikubo, 1985
; Mizuki et al., 1998
), but not as yet for paenibacilli. Fig. 2(b)
shows laminar material located on the spores; this material was shed during maturation of the spores and may represent the same material visible as the S-layer in thin sections (Fig. 1b
).
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-D-galactopyranoside and L-proline pNA (Table 2
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-D-galactopyranoside and L-proline pNA.
Description of Paenibacillus stellifer sp. nov.
Paenibacillus stellifer (stel'li.fer. L. adj. stellifer star-carrying, referring to the presence of star-shaped spores).
Gram-positive, facultatively anaerobic rods (0·60·8x2·55·0 µm), motile by means of peritrichous flagella. Ellipsoidal endospores form in swollen sporangia in the terminal region of the cell. Mature spores have a rib pattern connecting the poles of the spore. Spores as well as vegetative cells have pilus-like appendages. Biochemical features are specified in Table 2
. The temperature range for growth is 1540 °C. Non-haemolytic. Catalase-positive. Oxidase-negative. Nitrate is not reduced to nitrite or nitrogen. The DNA G+C content of the type strain is 55·6 mol%. The major fatty acid is C16 : 0 (3445 % total fatty acids) and the ratio of C15 : 0 iso : anteiso (28 °C) is 2·32·5. Produces cyclodextrins from potato starch.
The type strain, IS 1T (=DSM 14472T=CCUG 45566T), was isolated from food-packaging paperboard.
| ACKNOWLEDGEMENTS |
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| REFERENCES |
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Clesceri, L. S., Greenberg, A. E. & Eaton, A. D. (1998). Microbiological examination heterotrophic plate count. In Standard Methods for the Examination of Water and Wastewater, 20th edn, pp. 9-349-36. Washington, DC: American Public Health Association.
Elo, S., Suominen, I., Kämpfer, P., Juhanoja, J., Salkinoja-Salonen, M. & Haahtela, K. (2001). Paenibacillus borealis sp. nov., a nitrogen-fixing species isolated from spruce forest humus in Finland. Int J Syst Evol Microbiol 51, 535545.[Abstract]
Felsenstein, J. (1993). PHYLIP (phylogenetic inference package) version 3.5.1. Department of Genetics, University of Washington, Seattle, USA.
Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21132. Edited by H. N. Munro. New York: Academic Press.
Kozuka, S. & Tochikubo, K. (1985). Properties and origin of filamentous appendages on spores of Bacillus cereus. Microbiol Immunol 29, 2137.[Medline]
Maidak, B. L., Cole, J. R., Parker, C. T., Jr & 11 other authors (1999). A new version of the RDP (Ribosomal Database Project). Nucleic Acids Res 27, 171173.
Mizuki, E., Ohba, M., Ichimatsu, T., Hwang, S.-H., Higuchi, K., Saitoh, H. & Akao, T. (1998). Unique appendages associated with spores of Bacillus cereus isolates. J Basic Microbiol 38, 3339.[CrossRef][Medline]
Murphy, J. A. & Campbell, L. L. (1969). Surface features of Bacillus polymyxa spores as revealed by scanning electron microscopy. J Bacteriol 98, 737743.
Pirttijärvi, T. S. M., Graeffe, T. H. & Salkinoja-Salonen, M. S. (1996). Bacterial contaminants in liquid packaging boards: assessment of potential for food spoilage. J Appl Bacteriol 81, 445458.[Medline]
Pirttijärvi, T. S. M., Wahlström, G., Rainey, F. A., Saris, P. E. J. & Salkinoja-Salonen, M. S. (2001). Inhibition of bacilli in industrial starches by nisin. J Ind Microbiol Biotechnol 26, 107114.[CrossRef][Medline]
Rainey, F. A., Ward-Rainey, N., Kroppenstedt, R. M. & Stackebrandt, E. (1996). The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. Int J Syst Bacteriol 46, 10881092.
Seldin, L., Van Elsas, J. D. & Penido, E. G. C. (1984). Bacillus azotofixans sp. nov., a nitrogen-fixing species from Brazilian soils and grass roots. Int J Syst Bacteriol 34, 451456.
Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
Suominen, I., Suihko, M.-L. & Salkinoja-Salonen, M. (1997). Microscopic study of migration of microbes in food-packaging paper and board. J Ind Microbiol Biotechnol 19, 104113.[CrossRef][Medline]
TAPPI (1990). Bacteriological examination of paper and board. TAPPI standard T449 om-90. Atlanta: Technical Association of Pulp and Paper.
van der Maarel, M. J. E. C., Veen, A. & Wijbenga, D. J. (2000). Paenibacillus granivorans sp. nov., a new Paenibacillus species which degrades native potato starch granules. Syst Appl Microbiol 23, 344348.[Medline]
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