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State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100080, People's Republic of China
Correspondence
Xiuzhu Dong
dongxz{at}sun.im.ac.cn
| ABSTRACT |
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| MAIN TEXT |
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Strains B11-2T and LE-9 were isolated from methanogenic butyrate-degrading consortia which were enriched from an anaerobic digester for treating the wastewater of a bean curd farm (Beijing, China). After being purified in a crotonate-containing pre-reduced basal medium (McInerney et al., 1979
) by the Hungate roll-tube technique (Hungate, 1969
), single colonies were cultured in the same medium under a gas phase of N2/CO2 (80 : 20) at 37 °C.
C2C6 fatty acids, crotonate and CH4 were detected by GC (GC-14B; Shimadzu). Whole-cell fatty acids were analysed as fatty acid methyl esters with a MIDI microbial identification system. Cell wall compositions were identified using the method of Staneck & Roberts (1974)
.
DNA was prepared and purified as described by Marmur (1961)
and the 16S rDNA of strain B11-2T was amplified by PCR using genomic DNA as template. The universal primers Bac 27F and 1541R were complementary to positions 827 and 15251541, respectively, of the 16S rDNA of Escherichia coli (Winker & Woese, 1991
). Sequencing of the 16S rDNA was done by TaKaRa using ABI PRISM Big Dye Terminator Cycle Sequencing Ready Reaction kits (Perkin Elmer) and an ABI PRISM 377XL DNA sequencer. The complete 16S rDNA sequence of strain B11-2T and those of its closest relatives obtained from GenBank were aligned using CLUSTAL W software (version 1.5). Similarity values were calculated and converted to a distance matrix using the JukesCantor coefficient within the DNADIST program, and a phylogenetic tree was constructed using the neighbour-joining method (PHYLIP, version 3.5; Felsenstein, 1993
).
The G+C content of the DNA of strain B11-2T was determined by thermal denaturation (Marmur & Doty, 1962
). DNA from Escherichia coli K-12 was used as a reference for the determination of the thermal melting profile. The DNADNA liquid reassociation rate between strain B11-2T and Alkaliphilus transvaalensis JCM 10712T was determined at 63 °C, as described previously (De Ley et al., 1970
).
Cells of strains B11-2T and LE-9 were straight to slightly curved rods (2·03·0x0·40·6 µm) that stained Gram-positive and possessed multiple flagella. In the late-exponential and stationary phases of growth, the rods tended to form chains of 46 cells in length and swelled to form terminal spherical spores (Fig. 1
).
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To determine the phylogenetic relationship of strain B11-2T (and LE-9) with other bacteria, a dendrogram based on 16S rDNA sequence data was constructed (Fig. 2
). Strain B11-2T grouped in cluster XI within the low-GC Gram-positive bacteria, and was most closely related to Alkaliphilus transvaalensis JCM 10712T (Takai et al., 2001
) and other alkaliphilic spore-forming anaerobes (Cato et al., 1986
; Collins et al., 1994
; Rainey & Stackebrandt, 1993
). The 16S rDNA sequence similarity values of strain B11-2T to A. transvaalensis JCM 10712T, Clostridium aceticum DSM 1496T (Stackebrandt et al., 1999
), Clostridium felsineum DSM 794T (Collins et al., 1994
) and Clostridium paradoxum DSM 7308T (Rainey et al., 1996
) were 97, 94, 93 and 91 %, respectively. As strain B11-2T was most closely related to A. transvaalensis JCM 10712T phylogenetically, DNADNA relatedness between these strains was determined. A low DNADNA reassociation rate (21 %) was measured, which is lower than the species-defining threshold (70 % DNA homology) described by Wayne et al. (1987)
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7c, iso-C17 : 1
7c and iso-C17 : 0, were not detected in A. transvaalensis JCM 10712T because of the different culture medium used compared to that used by Takai et al. (2001)
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In the phylogenetic tree, strain B11-2T clustered with some alkaliphiles suggesting that it might be derived from an alkalitrophic lineage and has gradually lost its alkaline-prone characteristics by living in a neutral niche for a long time.
Description of Alkaliphilus crotonatoxidans sp. nov.
Alkaliphilus crotonatoxidans (cro.to.nat.ox'i.dans. N.L. part. adj. crotonatoxidans of the one that oxidizes crotonate).
Gram-positive, straight to slightly curved rods (2·03·0x0·40·6 µm). Cells occur singly or in chains. Vegetative cells swell to form terminal spherical spores. Motile by means of multiple flagella. Cell wall contains meso-diaminopimelic acid, glycine, aspartate, glutamate and ribose. The cellular fatty acid composition comprises major amounts of C14 : 0 and C16 : 0 and moderate amounts of iso-C13 : 0, C13 : 1
2c, iso-C15 : 0, anteiso-C15 : 0, C16 : 1
7c and anteiso-C17 : 0. Strictly anaerobic. The temperature range for growth is 1545 °C, with optimum growth at 37 °C. The pH range for growth is 5·59·0, with optimum growth at approximately pH 7·5. Growth occurs with yeast extract, peptone, tryptone, fructose, cellobiose, maltose, trehalose, xylose, ribose, citrate, malate and crotonate, but not with glucose, lactose, sucrose, galactose, lactate, succinate, butyrate or acetate. Dismutates crotonate to acetate and butyrate. Growth is not stimulated in the presence of other electron acceptors such as fumarate, sulfur and thiosulfate.
The type strain is B11-2T (=AS 1.2897T=JCM 11672T). The G+C content of its genomic DNA is 30·6 mol%.
Emended description of the genus Alkaliphilus
Straight to slightly curved rods that are motile by means of flagella, Gram-positive and spore-forming. Anaerobic. Neutrophilic or alkaliphilic heterotrophs. Utilize only proteinaceous substrates such as yeast extract, peptone and tryptone as sole energy source. G+C content of genomic DNA is in the range 3036 mol%. Cell walls contain meso-diaminopimelic acid, glycine, aspartate, glutamate and ribose. Members of the genus are characterized by fatty acid profiles that contain straight-chain acids and branched acids. Predominant fatty acids are C14 : 0 and C16 : 0 or C14 : 0, iso-C15 : 0 and C16 : 0. On the basis of 16S rRNA gene sequence analyses, the genus is most closely related to the genera Clostridium and Tindallia and is a member of cluster XI within the low-GC Gram-positive group of bacteria. The type species of the genus is Alkaliphilus transvaalensis.
| ACKNOWLEDGEMENTS |
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