Phylogeny of the photosynthetic euglenophytes inferred from the nuclear SSU and partial LSU rDNA, by S. Brosnan, W. Shin, K. M. Kjer & R. E. Triemer
International Journal of Systematic and Evolutionary Microbiology vol. 53, part 4, pp. 1175 - 1186
Supplementary Fig. A. Secondary structure of Euglena gracilis for the portion of the LSU rDNA sequenced in this analysis. [PDF] (11 KB)
Supplementary Fig. B. Secondary structural alignment for all 34 taxa sequenced in this analysis. TVS, Trachelomonas volvocinopsis var. spiralis; P. pleur. v. triquetra, Phacus pleuronectes var. triquetra. Numbers in parentheses after organism names indicate culture collection numbers in order to differentiate identical taxa. Within the sequence alignment, parentheses indicate a stem sequence narrowly separated from its complementary sequence. A pair of straight lines around a sequence notes a stem region that is separated from its complementary sequence by other hydrogen-bonded stems within the alignment. In both cases, complementary base pairs are underlined. [PDF] (150 KB)
Nexus files for various datasets
SSU rDNA. supplementary_SSU_rDNA_nexus.NEX (56 KB)
LSU rDNA. supplementary_LSU_rDNA_nexus.NEX (27 KB)
Combined dataset. supplementary_combo_nexus.NEX (81 KB)
