Supplementary data
16S-23S rDNA internal transcribed spacer sequences for analysis of the phylogenetic relationships among species of the genus Fusobacterium, by G. Conrads, M. C. Claros, D. M. Citron, K. L. Tyrrell, V. Merriam and E. J. C. Goldstein
International Journal of Systematic and Evolutionary Microbiology vol. 52, part 2, pp. 493-499
A similarity matrix table is available:
Microsoft Excel Spreadsheet
CLUSTAL X (1.8) multiple sequence alignment, ITS for phylogenetic analysis of Fusobacterium species and subspecies
F.nu.spp.nucleatumATCC25586T GAAGTAGCAGGCCTAACCGTAAGGAGGGATGTT-CCGAGGGTGTGATTAG 49
F.nu.spp.nucleatumATCC23726 GAAGTAGCAGGCCTAACCGTAAGGAGGGATGTT-CCGAGGGTGTGATTAG 49
F.nu.spp.fusiformeATCC51190T GAAGTAGCAGGCCTAACCGTAAGGAGGGATGCT-CCGAGGGTGTGATTAG 49
F.nu.spp.polymorphumATCC10953T GAAGTAGCAGGCCTAACCGTAAGGAGGGATGCT-CCGAGGGTGTGATTAG 49
F.nu.spp.polymorphumRMA7159 GAAGTAGCAGGCCTAACCGTAAGGAGGGATGCT-CCGAGGGTGTGATTAG 49
F.nu.spp.vincentiATCC49256T GAAGTAGCAGGCCTAACCGTAAGGAGGGATGCT-CCGAGGGTGTGATTAG 49
F.nu.spp.animalisATCC51191T GAAGTAGCAGGCCTAACCGTAAGGAGGGATGCT-CCGAGGGTGTGATTAG 49
F.nu.spp.animalisRMA6681 GAAGTAGCAGGCCTAACCGTAAGGAGGGATGCT-CCGAGGGTGTGATTAG 49
F.nu.spp.animalisRMA6840 GAAGTAGCAGGCCTAACCGTAAGGAGGGATGCT-CCGAGGGTGTGATTAG 49
F.simiaeATCC33568T GAAGTAGCAGGCCTAACCGTAAGGAGGGATGCT-CCGAGGGTGTGATTAG 49
F.periodonticumATCC33693T GAAGTAGCAGGCCTAACCGTAAGGAGGGATGCT-CCGAGGGTGTGATTAG 49
F.naviformeATCC25832T GAAGTAGCAGGCCTAACCGTAAGGAGGGATGCT-CCGAGGGTGTGATTAG 49
F.russiATCC25533T GAAGTAACAGGCCTAACCGAAAGGAGGGATGTT-CCGAGGGTGTGATTAG 49
F.ne.spp.necrophorumATCC25286T GAAGTAGCAGGCCTAACCTTAGGGAAGGATGCT-CCGAGGGTGTGGTTAG 49
F.ne.spp.necrophorumNCTC10575 GAAGTAGCAGGCCTAACCTTAGGGAAGGATGCT-CCGAGGGTGTGGTTAG 49
F.ne.spp.necrophorumATCC27852 GAAGTAGCAGGCCTAACCTTAGGGAAGGATGCT-CCGAGGGTGTGGTTAG 49
F.ne.spp.fundulif.ATCC51357T GAAGTAGCAGGCCTAACCTTAGGGAAGGATGCT-CCGAGGGTGTGGTTAG 49
F.gonidiaformansATCC25563T GAAGTAGCAGGCCTAACCGTAAGGAAGGATGCT-CCGAGGGTGTGGTTAG 49
F.gonidiaformansRMA11653 GAAGTAGCAGGCCTAACCGTAAGGAAGGATGCT-CCGAGGGTGTGGTTAG 49
F.gonidiaformansRMA11660 GAAGTAGCAGGCCTAACCGTAAGGAAGGATGCT-CCGAGGGTGTGGTTAG 49
F.mortiferumATCC25557T GAAGTAACAGGCCTAACCGTAAGGAGGGATGTT-CCGAGGGTGTGATTAG 49
F.mortiferumATCC9817 GAAGTAACAGGCCTAACCGTAAGGAGGGATGTT-CCGAGGGTGTGATTAG 49
F.ulceransNCTC12111T GAAGTAACAGGCCTAACCGTAAGGAGGGATGTT-CCGAGGGTGTGATTAG 49
F.ulceransNCTC12112 GAAGTAACAGGCCTAACCGTAAGGAGGGATGTT-CCGAGGGTGTGATTAG 49
F.variumATCC8501TSeq.1 GAAGTAACAGGCCTAACCGTAAGGAGGGATGTT-CCGAGGGTGTGATTAG 49
F.variumATCC8501TSeq.2 GAAGTAACAGGCCTAACCGTAAGGAGGGATGTT-CCGAGGGTGTGATTAG 49
F.variumATCC27725 GAAGTAACAGGCCTAACCGTAAGGAGGGATGTT-CCGATGGTGTGATTAG 49
F.necrogenesATCC25556T GAAGTAGCAGGCCTAACCGTAAGGAGGGATGCT-CCGAGGGTGTGATTAG 49
F.perfoetensATCC29250T GAAGTAACAGGCCTAACCGTAAGGATGGATGCT-CCGAGGGTGTGGTTAG 49
F.prausnitziiATCC27768T GAAGTCGGTAGTCTAACCGCAAGGA-GGACGCCGCCGAAGGTAAAACTGG 49
F.prausnitziiATCC27766 GAAGTCGGTAGTCTAACCGCAAGGA-GGACGCCGCCGAAGGTAAAACTGG 49
L.buccalisATCC14201T GAAGCCGCCGGTCCAACCGTAAGGAGGAAGGCG-TCTAAGGTGTGGATAG 49
L.buccalisRMA2181 GAAGCCGCCGGTCCAACCGTAAGGAGGAAGGCG-TCTAAGGTGTGGATAG 49
**** * * **** * *** * * * * * *** * *
F.nu.spp.nucleatumATCC25586T CGATTGGGGTGAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGG 99
F.nu.spp.nucleatumATCC23726 CGATTGGGGTGAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGG 99
F.nu.spp.fusiformeATCC51190T CGATTGGGGTGAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGG 99
F.nu.spp.polymorphumATCC10953T CGATTGGGGTGAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGG 99
F.nu.spp.polymorphumRMA7159 CGATTGGGGTGAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGG 99
F.nu.spp.vincentiATCC49256T CGATTGGGGTGAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGG 99
F.nu.spp.animalisATCC51191T CGATTGGGGTGAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGG 99
F.nu.spp.animalisRMA6681 CGATTGGGGTGAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGG 99
F.nu.spp.animalisRMA6840 CGATTGGGGTGAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGG 99
F.simiaeATCC33568T CGATTGGGGTGAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGG 99
F.periodonticumATCC33693T CGATTGGGGTGAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGG 99
F.naviformeATCC25832T CGATTGGGGTGAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGG 99
F.russiATCC25533T CGATTGGGGTGAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGG 99
F.ne.spp.necrophorumATCC25286T CGATTGGGGTGAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGG 99
F.ne.spp.necrophorumNCTC10575 CGATTGGGGTGAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGG 99
F.ne.spp.necrophorumATCC27852 CGATTGGGGTGAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGG 99
F.ne.spp.fundulif.ATCC51357T CGATTGGGGTGAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGG 99
F.gonidiaformansATCC25563T CGATTGGGGTGAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGG 99
F.gonidiaformansRMA11653 CGATTGGGGTGAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGG 99
F.gonidiaformansRMA11660 CGATTGGGGTGAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGG 99
F.mortiferumATCC25557T CGATTGGGGTGAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGG 99
F.mortiferumATCC9817 CGATTGGGGTGAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGG 99
F.ulceransNCTC12111T CGATTGGGGTGAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGG 99
F.ulceransNCTC12112 CGATTGGGGTGAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGG 99
F.variumATCC8501TSeq.1 CGATTGGGGTGAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGG 99
F.variumATCC8501TSeq.2 CGATTGGGGTGAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGG 99
F.variumATCC27725 CGATTGGGGTGAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGG 99
F.necrogenesATCC25556T CGATTGGGGTGAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGG 99
F.perfoetensATCC29250T CGATTGGGGTGAAGTCGTAACAAGGTATCCGTACGGGAACGTGCGGATGG 99
F.prausnitziiATCC27768T TGATTGGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGG 99
F.prausnitziiATCC27766 TGATTGGGGTGAAGTCGTAACAAGGTAGCCGTAGGAGAACCTGCGGCTGG 99
L.buccalisATCC14201T TGATTGGGGTGAAGTCGTAACAAGGTATCCGTACCGGAAGGTGCGGATGG 99
L.buccalisRMA2181 TGATTGGGGTGAAGTCGTAACAAGGTATCCGTACCGGAAGGTGCGGATGG 99
************************** ***** *** ***** ***
F.nu.spp.nucleatumATCC25586T ATCACCTCCTTTCTAAGGAGAATG----TGTCTTT-C--TCTAT-----T 137
F.nu.spp.nucleatumATCC23726 ATCACCTCCTTTCTAAGGAGAATG----TGTCTTT-C--TCTAT-----T 137
F.nu.spp.fusiformeATCC51190T ATCACCTCCTTTCTAAGGAGAAAAA----GTCTTT-C--TCTAT-----T 137
F.nu.spp.polymorphumATCC10953T ATCACCTCCTTTCTAAGGAGAATAA----GTCTTT-C--TCTAT-----T 137
F.nu.spp.polymorphumRMA7159 ATCACCTCCTTTCTAAGGAGAATA----NGTCTTT-C--TCTAT-----T 137
F.nu.spp.vincentiATCC49256T ATCACCTCCTTTCTAAGGAGAAAAA----GTCTTT-C--TCTAT-----T 137
F.nu.spp.animalisATCC51191T ATCACCTCCTTTCTAAGGAGAAAA-----GTCTTT-C--TCTAT-----T 136
F.nu.spp.animalisRMA6681 ATCACCTCCTTTCTAAGGAGAAGC-----GTCTTT-C--TCTAT-----T 136
F.nu.spp.animalisRMA6840 ATCACCTCCTTTCTAAGGAGAAAA-----GTCTTT-C--TCTAT-----T 136
F.simiaeATCC33568T ATCACCTCCTTTCTAAGGAGAAAA-----GTCTTT-C--TCTAT-----T 136
F.periodonticumATCC33693T ATCACCTCCTTTCTAAGGAGAATA----TGTCTTT-C--TCTAT-----T 137
F.naviformeATCC25832T ATCACCTCCTTTCTAAGGAGAAAAA----GTCTTT-C--TCTAT-----T 137
F.russiATCC25533T ATCACCTCCTTTCTAAGGAGA-ATA---TGTCTTT-C--TCTAT------ 136
F.ne.spp.necrophorumATCC25286T ATCACCTCCTTTCTAAGGAGTATTC--TTGTTGTT-CTTTCT-------T 139
F.ne.spp.necrophorumNCTC10575 ATCACCTCCTTTCTAAGGAGTATTCT--TGTTGTT-CTTTCT-------T 139
F.ne.spp.necrophorumATCC27852 ATCACCTCCTTTCTAAGGAGTATTC--TTGTTGTT-CTTTCT-------T 139
F.ne.spp.fundulif.ATCC51357T ATCACCTCCTTTCTAAGGAGTATTCT--TGTTGTT-CTTTCT-------T 139
F.gonidiaformansATCC25563T ATCACCTCCTTTCTAAGGAGA-CAACATTGTTGTT-C--TTTCT-----T 140
F.gonidiaformansRMA11653 ATCACCTCCTTTCTAAGGAGA-CAACATTGTTGTT-C--TTTCT-----T 140
F.gonidiaformansRMA11660 ATCACCTCCTTTCTAAGGAGA-CAACATTGTTGTT-C--TTTCT-----T 140
F.mortiferumATCC25557T ATCACCTCCTTTCTAAGGAGA-TCAT-TTCTCTTT-C--TCTAT-----T 139
F.mortiferumATCC9817 ATCACCTCCTTTCTAAGGAGA-TCAT-TTCTCTTT-C--TCTAT-----T 139
F.ulceransNCTC12111T ATCACCTCCTTTCTAAGGAGA-TCAT-TTCTCTTT-C--TCTAT-----T 139
F.ulceransNCTC12112 ATCACCTCCTTTCTAAGGAGA-TCAT-TTCTCTTT-C--TCTAT-----T 139
F.variumATCC8501TSeq.1 ATCACCTCCTTTCTAAGGAGA-TCAT-TTCTCTTT-C--TCTAT-----T 139
F.variumATCC8501TSeq.2 ATCACCTCCTTTCTAAGGAGA-TCAT-TTCTCTTT-C--TCTAT-----T 139
F.variumATCC27725 ATCACCTCCTTTCTAAGGAGA-TCAT-TTCTCTTT-C--TCTAT-----T 139
F.necrogenesATCC25556T ATCACCTCCTTTCTAAGGAG---CAA-TAC--TTT-C--TCTAT-----T 135
F.perfoetensATCC29250T ATCACCTCCTTTCTAAGGAG---CAATTCATATAT-C--TCT-T-----T 137
F.prausnitziiATCC27768T ATCACCTCCTTTCTAAGGAGTCAGGCAATGACAGAGCA-TCTAAGATGGT 148
F.prausnitziiATCC27766 ATCACCTCCTTTCTAAGGAGTCAGGCAATGACAGAGCA-TCTAAGATGGT 148
L.buccalisATCC14201T ATCACCTCCTTTCTAAGGAGTAACA----AACACTGCT-TCT-------T 137
L.buccalisRMA2181 ATCACCTCCTTTCTAAGGAGTAACA----AACACTGCT-TCT-------T 137
******************** * * *
F.nu.spp.nucleatumATCC25586T CTAT---TGGTAATGTTCTTA----------------------------- 155
F.nu.spp.nucleatumATCC23726 CTAT---TGGTAATGTTCTTA----------------------------- 155
F.nu.spp.fusiformeATCC51190T CTAT---TGGTAATGTTCTT------------------------------ 154
F.nu.spp.polymorphumATCC10953T CTAT---TGGTAATGTTCTTAC---------------------------- 156
F.nu.spp.polymorphumRMA7159 CTAT---TGGTAATGTTCTTAC---------------------------- 156
F.nu.spp.vincentiATCC49256T CTAT---TGGTAATGTTCTT------------------------------ 154
F.nu.spp.animalisATCC51191T CTAT---TGGTAATGTTCTT------------------------------ 153
F.nu.spp.animalisRMA6681 CTAT---TGGTAATGTTCTT------------------------------ 153
F.nu.spp.animalisRMA6840 CTAT---TGGTAATGTTCTTN----------------------------- 154
F.simiaeATCC33568T CTAT---TGGTAATGTTCTT------------------------------ 153
F.periodonticumATCC33693T CTAT---TGGTAATGTTCTTAGTAATTAAGGAGTGCAGGATGCACGACTA 184
F.naviformeATCC25832T CTAT---TGGTAATGTTCTT------------------------------ 154
F.russiATCC25533T ---T---TGCTA-TGTTC-------------------------------- 147
F.ne.spp.necrophorumATCC25286T CTT----TGGAAGGGTTC-------------------------------- 153
F.ne.spp.necrophorumNCTC10575 CTT----TGGAAGGGTTC-------------------------------- 153
F.ne.spp.necrophorumATCC27852 CTT----TGGAAGGGTTC-------------------------------- 153
F.ne.spp.fundulif.ATCC51357T CTT----TGGAAGGGTTC-------------------------------- 153
F.gonidiaformansATCC25563T NT-T---TGNATGTGTTC-------------------------------- 154
F.gonidiaformansRMA11653 NT-T---TGNATGTGTTC-------------------------------- 154
F.gonidiaformansRMA11660 NT-T---TGNATGTGTTC-------------------------------- 154
F.mortiferumATCC25557T CTAT---TGATAATGTTCTTGCA--------------------------- 159
F.mortiferumATCC9817 CTAT---TGATAATGTTCTTGCA--------------------------- 159
F.ulceransNCTC12111T CTAT---TGATAATGTTCTTA----------------------------- 157
F.ulceransNCTC12112 CTAT---TGATAATGTTCTTACA--------------------------- 159
F.variumATCC8501TSeq.1 CTAT---TGATAATGTTCTTGCA--------------------------- 159
F.variumATCC8501TSeq.2 CTAT---TGATAATGTTCTTGCA--------------------------- 159
F.variumATCC27725 CTAT---TGATAATGTTCTTGCA--------------------------- 159
F.necrogenesATCC25556T CTAT---TGATAATGTTCTTATAATCAAGGAGTGACGGAGTNCGACTATG 182
F.perfoetensATCC29250T CTAT---TGGTAATGTTCTT------------------------------ 154
F.prausnitziiATCC27768T CAGTCATTGGAACAGGTGACAAGTTAAAGTTTGAGTAGATATTGTTCGAT 198
F.prausnitziiATCC27766 CAGTCATTGGAACAGGTGACAAGTTAAAGTTTGAGTAGATATTGTTCGAT 198
L.buccalisATCC14201T CTTA---TGTCTATGTTC-------------------------------- 152
L.buccalisRMA2181 CTTA---TGTCTATGTTC-------------------------------- 152
** * *
F.nu.spp.nucleatumATCC25586T -----------------------------------C---ATTACTTC--- 164
F.nu.spp.nucleatumATCC23726 -----------------------------------C---ATTACTTC--- 164
F.nu.spp.fusiformeATCC51190T ---------------------------------TAC---ATTACTTC--- 165
F.nu.spp.polymorphumATCC10953T -----------------------------------C---ATTACTTG--- 165
F.nu.spp.polymorphumRMA7159 -----------------------------------C---ATTACTTG--- 165
F.nu.spp.vincentiATCC49256T ---------------------------------TAC---ATTACTTC--- 165
F.nu.spp.animalisATCC51191T ---------------------------------TAC---ATTACTTC--- 164
F.nu.spp.animalisRMA6681 ---------------------------------TAC---ATTACTTC--- 164
F.nu.spp.animalisRMA6840 ----------------------------------AC---ATTACTTC--- 164
F.simiaeATCC33568T ---------------------------------TAC---ATTACTTC--- 164
F.periodonticumATCC33693T TAATTACAAGATGCAGCATGNAGT-------GCTGCGGGACATTTATCAA 227
F.naviformeATCC25832T ---------------------------------TAC---ATTACTTC--- 165
F.russiATCC25533T -----------------------------------CT------------- 149
F.ne.spp.necrophorumATCC25286T ----------------------------------GC------GCA----- 158
F.ne.spp.necrophorumNCTC10575 ----------------------------------GC------GCA----- 158
F.ne.spp.necrophorumATCC27852 ----------------------------------GC------GCA----- 158
F.ne.spp.fundulif.ATCC51357T ----------------------------------GC------GCA----- 158
F.gonidiaformansATCC25563T ---------------GCG--CA-T------GGAC-CTTGNAAACTATATA 179
F.gonidiaformansRMA11653 ---------------GCG--CA-T------GGAC-CTTGNAAACTATATA 179
F.gonidiaformansRMA11660 ---------------GCG--CA-T------GGAC-CTTGNAAACTATATA 179
F.mortiferumATCC25557T ---------------GCGTNTT---------AGCGCTGGATAACTNATCA 185
F.mortiferumATCC9817 ---------------GCGTNTT---------AGCGCTGGATAACTNATNA 185
F.ulceransNCTC12111T ----------------CAG-CG-T--ATTAAG-CGCTGGATAACTTATCA 186
F.ulceransNCTC12112 ---------------GCGTATT--------AAGCGCTGGATAACTTATCA 186
F.variumATCC8501TSeq.1 ---------------GCGTNTTAG---------CGCTGGATAACTNATCA 185
F.variumATCC8501TSeq.2 ---------------GCGTNTTAG---------CGCTGGATAACTNATCA 185
F.variumATCC27725 ---------------GCGTNTT---------AGCGCTGGATAACTNATCA 185
F.necrogenesATCC25556T ATTATAAAGATGTCAGCATTCG-GNGAATGGGACGCACATTA--TNATTA 229
F.perfoetensATCC29250T ----------------------------------AC---ATTACTCTT-- 165
F.prausnitziiATCC27768T TTTGAGGGCCCTGAAAAGGACACTCAAAGACGTACCTTGAAAACTGAATA 248
F.prausnitziiATCC27766 TTTGAGGGCCCTGAAAAGGACACTCAAAGACGTACCTTGAAAACTGAATA 248
L.buccalisATCC14201T ---------------------------------------ATTATTA---- 159
L.buccalisRMA2181 ---------------------------------------ATTATTA---- 159
F.nu.spp.nucleatumATCC25586T ---TGAACATTGGAAACTAT----ATAGTAGAACAAACAAGAA--AAAAA 205
F.nu.spp.nucleatumATCC23726 ---TGAACATTGGAAACTAT----ATAGTAGAA------------CAAAN 195
F.nu.spp.fusiformeATCC51190T ---TGAACATTGGAAACTAT----ATAGAAGAA------------CAAAA 196
F.nu.spp.polymorphumATCC10953T ---TGAACATTGGAAACTAT----TTTGATTACCAGAC-ACNACTCATGG 207
F.nu.spp.polymorphumRMA7159 ---TGAACATTGGAAACTAT----TTTGATTACCAGAC-ACNACTCATGG 207
F.nu.spp.vincentiATCC49256T ---TGAACATTGGAAACTAT----ATAGTAGAA------------CAAAA 196
F.nu.spp.animalisATCC51191T ---TGAACATTGGAAACTAT----ATAGTAGAACAAACAAGAA--AAAAA 205
F.nu.spp.animalisRMA6681 ---TGAACATTGGAAACTAT----ATAGTAGAACAAACAAGAA--AAAAA 205
F.nu.spp.animalisRMA6840 ---TGAACATTGGAAACTAT----ATAGTANAACAAACAAGAA--AAAAA 205
F.simiaeATCC33568T ---TGAACATTGGAAACTAT----ATAGTAGAACAAACAAGAA--AAAAA 205
F.periodonticumATCC33693T TTCTGAACATTGGAAACTAT----ATAGTAGAACAAACAAGAAAACAAAA 273
F.naviformeATCC25832T ---TGAACATTGGAAACTAT----ATAGTAGAA------------CAAAA 196
F.russiATCC25533T -A-TGAACATTGGAAACTA---T-ATAGTAGAAC----AA-AA--AATAA 186
F.ne.spp.necrophorumATCC25286T ---TGGACCTTGGAAACTGT----ATAGTAGATCAAAAAACAAA-CAAGA 200
F.ne.spp.necrophorumNCTC10575 ---TGGACCTTGGAAACTGT----ATAGTAGATCAAAAAACAAA-CAAGA 200
F.ne.spp.necrophorumATCC27852 ---TGGACCTTGGAAACTGT----ATAGTAGATCAAAAAACAAA-CAAGA 200
F.ne.spp.fundulif.ATCC51357T ---TGGACCTTGGAAACTGT----ATAGTAGATCAAAAAACAAA-CAAGA 200
F.gonidiaformansATCC25563T NT-AGATCAA---AAACAA---A-CAAGAA---------A-NC--AAAAN 209
F.gonidiaformansRMA11653 NT-AGATCAA---AAACAA---A-CAAGAA---------A-NC--AAAAN 209
F.gonidiaformansRMA11660 NT-AGATCAA---AAACAA---A-CAAGAA---------A-NC--AAAAG 209
F.mortiferumATCC25557T AA-TGGACATTGNAAACTAT----ATAGTAGATAATA--------CAATT 222
F.mortiferumATCC9817 AA-TGGACATTGNAAACTAT----ATAGTAGATAATA--------CAATT 222
F.ulceransNCTC12111T AA-TGGACATTGGAAACTA---T-ATAGTAGAT---TAAA-TA--CAATT 225
F.ulceransNCTC12112 AA-TGGACATTGGAAACTAT----ATAGTAGAT---TAAA-TA--CAATT 225
F.variumATCC8501TSeq.1 AA-TGGACATTGGAAACTAT----ATAGTAGATAATA--------CAATT 222
F.variumATCC8501TSeq.2 AA-TGGACATTGGAAACTAT----ATAGTAGATAATA--------CAATT 222
F.variumATCC27725 AA-TGGACATTGGAAACTAT----ATAGTAGATAATA--------CAATT 222
F.necrogenesATCC25556T A--TGGACATTGGAAACTA---T-ATAGTAAATCAGATNA-TA--CAATT 270
F.perfoetensATCC29250T ---TGAACATTGGAAACTA---C-ATAGTAATTAGAGAAACCAA-ACAAT 207
F.prausnitziiATCC27768T AT---AAC-TGCGAAACAAAGATTATAGTAAGTTCTTTTTTAAG-AAATA 293
F.prausnitziiATCC27766 AT---AAC-TGCGAAACAAAGATTATAGTAAGTTCTTTTTTAAG-AAATA 293
L.buccalisATCC14201T ----GGACAATGGGAAATGA----ATATGTANGTA----------AAANA 191
L.buccalisRMA2181 ----GGACAATGGGAAATGA----ATAGTAGGTTA----------AAANA 191
* **
F.nu.spp.nucleatumATCC25586T TTA---ACTCTAAACAATT--TCTTTAGA--GTTAGC--TTGNCAA---- 242
F.nu.spp.nucleatumATCC23726 ATA---ACTCTAA-CAANT--TCTTTACA-AGTTAGC---TGTCAA---- 231
F.nu.spp.fusiformeATCC51190T ATA---ACTCTAACAATTTCTTA----GA--GT-AGC---TGTCAA---- 229
F.nu.spp.polymorphumATCC10953T TGC---ANTCTNACAATTTCT---TA---GNGTNAGC--ATGGCAAAC-- 244
F.nu.spp.polymorphumRMA7159 TGC---TGTNGNACAATTTCT---TA---GC-TNAANNNTTGNAAA---- 243
F.nu.spp.vincentiATCC49256T TTA---ACTCTAACAATTTCTTA----GA--GT-AGC---TGTCAA---- 229
F.nu.spp.animalisATCC51191T TTA---ACTCTAACAATTTCTTA----GA--GT-AGC---TGTCAA---- 238
F.nu.spp.animalisRMA6681 TTA---ACTCTAACAATTTCTTA----GA--GTTAGC--TTGTCAA---- 240
F.nu.spp.animalisRMA6840 TTA---ACTCTAACAATTTCTTA----GA--GT-AGC---TGTCAA---- 238
F.simiaeATCC33568T TTA---ACTCTAACAATTTCTTA----GA--GT-AGC---TGTCAAA--- 239
F.periodonticumATCC33693T TTA---ACNNTAACCATTTGTTAA----G--GTTAG-----GTTAA---- 305
F.naviformeATCC25832T TTA---ACTCTAACAATTTCTTA----GA--GTTAGC---TGTCAA---- 230
F.russiATCC25533T AAA---ACTCTAAATTTCTT-T---A-GA--GTTAGC--TTGTCAA---- 220
F.ne.spp.necrophorumATCC25286T ATAAAGAACAAAGAACTCTAGTTTCTAGA--GTTAGC---TGTCAAAGA- 244
F.ne.spp.necrophorumNCTC10575 ATAAAGAACAAAGAACTCTAGTTTCTAGA--GTTAGC---TGTCAAAGA- 244
F.ne.spp.necrophorumATCC27852 ATAAAGAACAAAGAACTCTAGTTTCTAGA--GTTAGC--TTGTCAAAGA- 245
F.ne.spp.fundulif.ATCC51357T ATAAAGAACAAAGAACTCTAGTTTCTAGA--GTTAGC---TGACAA---- 241
F.gonidiaformansATCC25563T TTN---ACTCTANNTNAT-------A-NA--GTTAGN---TGTCAAA--- 240
F.gonidiaformansRMA11653 TTN---ACTCTANNTNAT-------A-NA--GTTAGN---TGANAAA--- 240
F.gonidiaformansRMA11660 ATN---ACTCTAGNTNAT-------A-NA--GTTAGN---TGANAAA--- 240
F.mortiferumATCC25557T TTA---ACTCTTGTTCATA-TAAACA-GA--GTTAGC---TGTCAATCAA 262
F.mortiferumATCC9817 TTA---ACTCTTGTTCATA--TAAACAGA--GTTAGC---TGTCAATCAA 262
F.ulceransNCTC12111T TTA---ACTCTTGTTTATAT-AAACA-GA--GTTAGC---TGTCAATCAA 265
F.ulceransNCTC12112 TTA---ACTCTTGTTTATA-TAAACA-GA--GTTAGC---TGTCAATCAA 265
F.variumATCC8501TSeq.1 TTA---ACTCTTGTTNATA--TAAACAGA--GTTAGC---TGTCAATCAA 262
F.variumATCC8501TSeq.2 TTA---ACTCTTGTTNATA--TAAACAGA--GTTAGC---TGTCAATCAA 262
F.variumATCC27725 NTA---ACTCTTGNTNATA--TAAACAGA--GTTAGC---TGTCAATCAA 262
F.necrogenesATCC25556T T-A---ACTCTAATT----T-TAATA-GA--GTTAGC--CTGTCAATCAA 306
F.perfoetensATCC29250T TTT---ACTAAATTTTTTAG-TA----GA--GTTAG-------CAAACT- 239
F.prausnitziiATCC27768T TTACAATTTCAAAAGGAAGGGTAACAATA--ATCTTCG-TTGGCAAGAGA 340
F.prausnitziiATCC27766 TTACAATTTCAAAAGGAAGGGTAACAATA--ATCTTCG-TTGGCAAGAGA 340
L.buccalisATCC14201T TTA------CAATAAACTA--------GA--GTAAAAGNTATNCTGG--- 222
L.buccalisRMA2181 TTA------CAATAAACTA--------GA--GTAAAAGNTATNCTGG--- 222
*
F.nu.spp.nucleatumATCC25586T --------AAAA------TAG----GTTAAAATAATTAAG-GG-CA--C- 269
F.nu.spp.nucleatumATCC23726 --------AAAG------TAG----GTTAAAATAATNAAG-GG-CA--C- 258
F.nu.spp.fusiformeATCC51190T -------AAAAA------TAG----GTTAAAATAATTAAG-GG-CA--C- 257
F.nu.spp.polymorphumATCC10953T -------TATAT--------G----GTTATACAAACAAAG-GG-CA--C- 270
F.nu.spp.polymorphumRMA7159 ------CTATAT--------G----GTTAAACAAACAAAG-GG-CA--C- 270
F.nu.spp.vincentiATCC49256T -------AAATA-------------GGTTAAATTATTAAG-GGCCC--C- 255
F.nu.spp.animalisATCC51191T --------AAAA------TAG----ATTAAAATAATTAAG-GG-CA--C- 265
F.nu.spp.animalisRMA6681 ---------AAA------TAG----GTTAAAATAATTAAG-GG-CA--C- 266
F.nu.spp.animalisRMA6840 -------AAAAA------TAG----GTTAAAATAATTAAG-GG-CA--C- 266
F.simiaeATCC33568T -------AAAATCG-----------GTTAAAATAATTAAG-GGCCC--C- 267
F.periodonticumATCC33693T -------AAATA-------------GGTAATATA-------GG-CA--C- 324
F.naviformeATCC25832T --------AAAA------TAG----GTTAAAATAATTAAG-GG-CA--C- 257
F.russiATCC25533T -------AAAAA-----ATAG----ATTAAAATACTTAAG-GG-CA--C- 249
F.ne.spp.necrophorumATCC25286T -------AAAAACC-----AG----GTTAANGTACCAAAG-GG-CA--C- 273
F.ne.spp.necrophorumNCTC10575 -------AAAAACC-----AG----GTTAANGTACCAAAG-GG-CA--C- 273
F.ne.spp.necrophorumATCC27852 -------AAAAAC------AG----GTTAAAGTACCAAAG-GG-CA--C- 273
F.ne.spp.fundulif.ATCC51357T -------AGAAACANC--AAG----GTTAAAGTACCAAAG-GG-CA--C- 273
F.gonidiaformansATCC25563T -------GAAAA-------AG----ATTAAAGTAAATAAG-GG-CA--C- 267
F.gonidiaformansRMA11653 -------GAAAA-------AG----ATTAAAGTAAATAAG-GG-CA--C- 267
F.gonidiaformansRMA11660 -------GAAAA-------AG----ATTAAAGTAAATAAG-GG-CA--C- 267
F.mortiferumATCC25557T ATTAANCAAAAACANA-ATAG----GTTAAAATAATTAAG-GG-CA---- 301
F.mortiferumATCC9817 ATTAANCAAAAACANA-ATAG----GTTAAAATAATTAAG-GG-CA---- 301
F.ulceransNCTC12111T ATTAAACAAAAACAAA-ATAG----GTTAAAATAATTAAG-GG-CA--C- 305
F.ulceransNCTC12112 ATTAAACAAAAACAAA-ATAG----GTTAAAATAATTAAG-GG-CA---- 304
F.variumATCC8501TSeq.1 ATTAAACAAAAACANA-ATAG----GTTAAAATAATTAAG-GG-CA---- 301
F.variumATCC8501TSeq.2 ATTAANCAAAAACANA-ATAG----GTTAAAATAATTAAG-GG-CA---- 301
F.variumATCC27725 ATTAAACAAAAACACA-CTAG----GTTAAAATAATTAAG-GG-CA---- 301
F.necrogenesATCC25556T --TATTTAAAAAC--T-AAAG----GTTAAA--TATTA-G-GG-CA--C- 339
F.perfoetensATCC29250T -------TAAATTT---AAAG----ATTAAGAGAATTAAG-GG-CA--C- 270
F.prausnitziiATCC27768T GAATCACGAGGATACCAAATGTTCTTAANGAACGTTTGAAAGGTCAAGCG 390
F.prausnitziiATCC27766 GAATCACGAGGATACCAAATGTTCTTAANGAACGTTTGAAAGGTCAAGCG 390
L.buccalisATCC14201T -------AGAAA----------------AAAGCTANTAAG-GG-CA---- 243
L.buccalisRMA2181 -------AGAAA----------------AAAGCTANTAAG-GG-CA---- 243
** *
F.nu.spp.nucleatumATCC25586T -ACAAAGG--ATG-CCTAGGTA----GTAA-GAGCC-GATGAAGGACGTG 309
F.nu.spp.nucleatumATCC23726 -ACAAAGG--ATG-CCTAGGTA----GTAA-GAGCC-GAT-AAGGACGTG 297
F.nu.spp.fusiformeATCC51190T -ACAAGG---ATG-CCTAGGTA----GTAA-GAGCC-GATGAAGGACGTG 296
F.nu.spp.polymorphumATCC10953T -ACAAGG---ATG--CTAGGTA----GTAA-GAGCC-GAT-AAGGACGTG 307
F.nu.spp.polymorphumRMA7159 -ACAAGG---ATG--CTAGGTA----GTAA-GAGCC-GAT-AAGGACGTG 307
F.nu.spp.vincentiATCC49256T -CCAAGGG--TT--CCTTGGTA----GTAA-GAACCCGATGAAGGACGTG 295
F.nu.spp.animalisATCC51191T -ACAAAGG--ATG-CCTAGGTA----GTAA-GAGCC-GATGAAGGACGTG 305
F.nu.spp.animalisRMA6681 -ACAAAGG--ATG-CCTAGGTA----GTAA-GAGCC-GATGAAGGACGTG 306
F.nu.spp.animalisRMA6840 -ACAAAGG--ATG-CCTAGGTA----GTAA-GAGCC-GATGAAGGACGTG 306
F.simiaeATCC33568T --CAAGGGATC---CCTAGGTA----GTAA--AACCCGATGAAGGACCTG 306
F.periodonticumATCC33693T -ACAAGGA---TG-CCTAGGTA----GA---GAGCC-GATGAAGGACGTG 361
F.naviformeATCC25832T -ACAAAGGA--TG-CCTAGGTA----GTAA-GAGCC-GATGAAGGACGTG 297
F.russiATCC25533T -ACA-AAG-GATG-CCTAGGTA----GTAA-GAGCC-GAAGAAGGACGTG 289
F.ne.spp.necrophorumATCC25286T -ACAAGGGA--TG-CCTAGGTA----GAAA-GA-CC-GAAGAAGGACGTG 312
F.ne.spp.necrophorumNCTC10575 -ACAAGGGA--TG-CCTAGGTA----GAAA-GA-CC-GAAGAAGGACGTG 312
F.ne.spp.necrophorumATCC27852 -ACAAGGGA--TG-CCTAGGTA----GAAA-GA-CC-GAAGAAGGACGTG 312
F.ne.spp.fundulif.ATCC51357T -ACAAGGGA--TG-CCTAGGTA----GAAA-GAGCC--AACAAGGACGTG 312
F.gonidiaformansATCC25563T -ACA-AGG-GATG-CCTAGGTA----GTA--GAGCC-GAAGAAGGACCTG 306
F.gonidiaformansRMA11653 -ACA-AGG-GATG-CCTAGGTA----GTA--GAGCC-GAAGAAGGACGTG 306
F.gonidiaformansRMA11660 -ACA-AGG-GATG-CCTAGGTA----GTA--GAGCC-GAAGAAGGACGTG 306
F.mortiferumATCC25557T --CACAGGGAATG-CCTAGGTA----GTAATGAGCC-GATGAAGGACGTG 343
F.mortiferumATCC9817 --CACAGGGAATG-CCTAGGTA----GTAATGAGCC-GATGAAGGACGTG 343
F.ulceransNCTC12111T -ACA-GGG-AATG-CCTAGGTA----GTAA-GAGCC-GATGAAGGACGTG 345
F.ulceransNCTC12112 --CACAGGGAATG-CCTAGGTA----GTAA-GAGCC-GATGAAGGACGTG 345
F.variumATCC8501TSeq.1 --CACAGGGAATG-CCTAGGTA----GTAATGAGCC-GATGAAGGACGTG 343
F.variumATCC8501TSeq.2 --CACAGGGAATG-CCTAGGTA----GTAATGAGCC-GATGAAGGACGTG 343
F.variumATCC27725 --CACAGGGAATG-CCTAGGTA----GTAA-GAGCC-GATGAAGGACGTG 342
F.necrogenesATCC25556T -ATA-GGG-AATG-CCTAGG-A----GTAA-GA-CC-GAT-AAGGACGTG 376
F.perfoetensATCC29250T -ACG-GTG-GATG-CCTAGGTA----ATAA-GAGCC-GATGAAGGACGTG 310
F.prausnitziiATCC27768T AACATGGGCGCAGGCGAATGCTTGGCACTG-GAGCC-GATGAAAGACGTG 438
F.prausnitziiATCC27766 AACATGGGCGCAGGCGAATGCTTGGCACTG-GAGCC-GATGAAAGACGTG 438
L.buccalisATCC14201T --CACGGAGGATG-CCTAGGCA----ACAAC-AGCC-GATGAAGGACGTG 284
L.buccalisRMA2181 --CACGGAGGATG-CCTAGGCA----ACAAC-AGCC-GATGAAGGACGTG 284
* * ** * ** *** **
F.nu.spp.nucleatumATCC25586T G-TAAGCCTGCGATAA-GCCTAGATAAGTTGCAATCGAACGTAAGAGTCT 357
F.nu.spp.nucleatumATCC23726 G-TAA-GCTGCGATAA-GCCTAGATAAGTTGCAATCGAACGTAAGAGTCT 344
F.nu.spp.fusiformeATCC51190T G-TAA-GCTGCGATAA-GCCTAGATAAGTTGCAATCGAACGTAAGAATCT 343
F.nu.spp.polymorphumATCC10953T G-TAA-GCTGCGATAA-GCCTAGATAAGTTGCAATCGAACGTAAGAGTCT 354
F.nu.spp.polymorphumRMA7159 G-TAA-GCTGCGATAA-GCCTAGATAAGTTGCAATCGAACGTAAGAGTCT 354
F.nu.spp.vincentiATCC49256T G-TAA-GCTGCGATAA-GCCTAGATAAGTTGCAATCGAACGTAAGAATCT 342
F.nu.spp.animalisATCC51191T G-TAA-GCTGCGATAA-GCCTAGATAAGTTGCAATCGAACGTAAGAGTCT 352
F.nu.spp.animalisRMA6681 G-TAA-GCTGCGATAA-GCCTAGATAAGTTGCAATCGAACGTAAGAGTCT 353
F.nu.spp.animalisRMA6840 G-TAA-GCTGCGATAA-GCCTAGATAAGTTGCAATCGAACCTAAGAGTCT 353
F.simiaeATCC33568T G-TAA-GCTGCGATAA-GCCTAGATAAGTTCCAATCGAACCTAAGAGTCT 353
F.periodonticumATCC33693T G-TAAGCCTGCGATAA-GCCTAGATAAGTTGCAATCGAACGTAAGAATCT 409
F.naviformeATCC25832T G-TAAGCCTGCGATAA-GCCTAGATAAGTTGCAATCGAACGTAAGAGTCT 345
F.russiATCC25533T G-TAA-GCTGCGATAA-GCTTAGGTAAGCTGCAAACGAGCG-TAGAGCCT 335
F.ne.spp.necrophorumATCC25286T G-TA--GCTGCGATAA-GCTT-GCGAAGTTGCAAACGAACGT-GGATGCC 356
F.ne.spp.necrophorumNCTC10575 G-TA--GCTGCGATAA-GCTT-GCGAAGTTGCAAACGAACGT-GGATGCC 356
F.ne.spp.necrophorumATCC27852 G-TA--GCTGCGATAA-GCTT-GCGAAGTTGCAAACGAACGT-GGATGCC 356
F.ne.spp.fundulif.ATCC51357T G-TA--GCTGCGATAA-GCTT-GCGAAGTTGCAAACGAACGT-GGATGCC 356
F.gonidiaformansATCC25563T G-TAAAGCTGCGATAA-GCTTGGTGAAATTGCAAACGAAC--TGTATACC 352
F.gonidiaformansRMA11653 G-TAAAGCTGCGATAA-GCTTGGTGAAGTTGCAAACGAAC--TGTATACC 352
F.gonidiaformansRMA11660 G-TAAAGCTGCGATAA-GCTTGGTGAAGTTGCAAACGAAC--TGTAGACC 352
F.mortiferumATCC25557T GGTAATGCTGCGATAATGCTTGGGTTAGCTGCAAACGAGCGCCA-ATCCC 392
F.mortiferumATCC9817 GGTAATGCTGCGATAATGCTTGGGTTAGCTGCAAACGAGCGCCA-ATCCC 392
F.ulceransNCTC12111T G-TAA-GCTGCGATAA-GCTTGGGTTAGCTGCAAACGAGCGCCA-ACCCC 391
F.ulceransNCTC12112 G-TAA-GCTGCGATAA-GCTTGGGTTAGCTGCAAACGAGCGCCA-ACCCC 391
F.variumATCC8501TSeq.1 G-TAA-GCTGCGATAA-GCTTGGGTTAGCTGCAAACGAGCGCCA-ATCCC 389
F.variumATCC8501TSeq.2 G-TAA-GCTGCGATAA-GCTTGGGTTAGCTGCAAACGAGCGCCA-ATCCC 389
F.variumATCC27725 G-TAANGCTGCGATAA-GCTTGGGTTAGCTGCAAACGAGCGCCA-ATCCC 389
F.necrogenesATCC25556T G-TAA-GCTGCGATAA-GCTCAGGGTAGTTGCAATCGAACGTTTGATCCT 423
F.perfoetensATCC29250T G-TAA-GCTGCGATAA-GCCTGGAGTAGTTGCAATCGAAC-TTTGATCCC 356
F.prausnitziiATCC27768T A-TAA-GCTGCGATAA-GCTTCGGGGAGCTGCAAATAAGCATT-GATCCG 484
F.prausnitziiATCC27766 A-TAA-GCTGCGATAA-GCTTCGGGGAGCTGCAAATAAGCATT-GATCCG 484
L.buccalisATCC14201T A-TAA-GCTGCGATAA-GCCGGGAGTAGATGCACATAATCGTTA-ATCCC 330
L.buccalisRMA2181 A-TAA-GCTGCGATAA-GCCGGGAGTAGATGCACATAATCGTTA-ATCCC 330
** ********* ** * * * ** * * * *
F.nu.spp.nucleatumATCC25586T AGGATTTCC-GAATGGAGCAA--TCTATT----AAGA----TG--GAGTC 394
F.nu.spp.nucleatumATCC23726 AGGATTTCC-GAATGGAGCAA--TCTATT----AAGA----TG--GAGTC 381
F.nu.spp.fusiformeATCC51190T AGGATTTCC-GAATGGAGCAA--TCTATT----AAGA----TG--GAGTC 380
F.nu.spp.polymorphumATCC10953T AGGATTTCC-GAATGGAGCAA--TCTATT----AAGA----TG--GAGTC 391
F.nu.spp.polymorphumRMA7159 AGGATTTCC-GAATGGAGCAA--TCTATT----AAGA----TG--GAGTC 391
F.nu.spp.vincentiATCC49256T AGGATTTCC-GAATGGAGCAA--TCTATT----AAGA----TG--GAGTC 379
F.nu.spp.animalisATCC51191T AGGATTTCC-GAATGGAGCAA--TCTATT----AAGA----TG--GAGTC 389
F.nu.spp.animalisRMA6681 AGGATTTCC-GAATGGAGCAA--TCTATT----AAGA----TG--GAGTC 390
F.nu.spp.animalisRMA6840 AGGATTTCC-GAATGGAGCAA--TCTATT----AAGA----TG--GAGTC 390
F.simiaeATCC33568T AGGATTTCC-GAATGGACCAT--TCTATT----AAGA----TG--GAGTC 390
F.periodonticumATCC33693T AGGATTTCC-GAATGGAGCAA--TCTATT----AAGA----TG--GAGCC 446
F.naviformeATCC25832T AGGATTTCC-GAATGGAGCAA--TCTATT----AAGAT-------GAGTC 381
F.russiATCC25533T AAGATTTCC-GAATGGAGCAA--TCTACT----AAGA--T--G--GAGTC 372
F.ne.spp.necrophorumATCC25286T AAGATTTCC-GAATGGAGCAT--TCTGTA----AAGA-----GTCATGTC 394
F.ne.spp.necrophorumNCTC10575 AAGATTTCC-GAATGGAGCAA--TCTGTA----AAGA-----GTCATGTC 394
F.ne.spp.necrophorumATCC27852 AAGATTTCC-GAATGGAGCAA--TCTGTA----AAGA-----GTCATGTC 394
F.ne.spp.fundulif.ATCC51357T AAGATCTCC-GAATGGAGCAA--TCTGTA----AAGA-----GTCATGTC 394
F.gonidiaformansATCC25563T AAGATTTCC-GAATGGAGCAA--TCTGTA----AAGAG-T--C--ATGTC 390
F.gonidiaformansRMA11653 AAGATTTCC-GAATGGAGCAA--TCTGTA----AAGAG-T--C--ATGTC 390
F.gonidiaformansRMA11660 AAGATTTCC-GAATGGAGCAA--TCTGTA----AAGAG-T--C--ATGTC 390
F.mortiferumATCC25557T AAGATTTCC-GAATGGAGCAA--TCTGCT----AAGA----TG--GAGTC 429
F.mortiferumATCC9817 AAGATTTCC-GAATGGAGCAA--TCTGCT----AAGA----TG--GAGTC 429
F.ulceransNCTC12111T ANGATTTCC-GAATGGAGCAA--TCTGCT----AAGA--T--G--GAGTC 428
F.ulceransNCTC12112 ANGATTTCC-GAATGGAGCAA--TCTGCT----AAGA----TG--GAGTC 428
F.variumATCC8501TSeq.1 AAGATTTCC-GAATGGAGCAA--TCTGCT----AAGA----TG--GAGTC 426
F.variumATCC8501TSeq.2 AAGATTTCC-GAATGGAGCAA--TCTGCT----AAGA----TG--GAGTC 426
F.variumATCC27725 AAGATTTCC-GAATGGAGCAA--TCTGCT----AAGA----TG--GAGTC 426
F.necrogenesATCC25556T GAGATTTCC-GAATGGAGCAA--TCCGCT----AAGT--T--G--AAGAC 460
F.perfoetensATCC29250T AGGATTTCCCGAATGGAGAAA--TCTACT----AAGA--T--G--AAGTC 394
F.prausnitziiATCC27768T GAGATTTCT-GAATGAGGAAACTTCACCTGGGTTCATACTCAGGTACGTT 533
F.prausnitziiATCC27766 GAGATTTCT-GAATGAGGAAACTTCACCTGGGTTCATACTCAGGTACGTT 533
L.buccalisATCC14201T CGGATTTCC-GAATGGGAAAA--CCTGC------ATA--TCTG--GAGGA 367
L.buccalisRMA2181 CGGATTTCC-GAATGGGAAAA--CCTGC------ATA--TATG--GAGGA 367
*** ** ***** * * *
F.nu.spp.nucleatumATCC25586T TTA--ATACGAA-----AGAG--------GGAACCGCGTGAACTGAAACA 429
F.nu.spp.nucleatumATCC23726 TTA--ATACGAA-----AGAG--------GGAACCGCGTGAACTGAAACA 416
F.nu.spp.fusiformeATCC51190T TTA--ATACGAA-----AGAG--------GGAACCGCGTGAACTGAAACA 415
F.nu.spp.polymorphumATCC10953T TTA--ATACGAA-----AGAG--------GGAACCGCGTGAACTGAAACA 426
F.nu.spp.polymorphumRMA7159 TTA--ATACGAA-----AGAG--------GGAACCGCGTGAACTGAAACA 426
F.nu.spp.vincentiATCC49256T TTA--ATACGAA-----AGAG--------GGAACCGCGTGAACTGAAACA 414
F.nu.spp.animalisATCC51191T TTA--ATACGAA-----AGAG--------GGAACCACGTGAACTGAAACA 424
F.nu.spp.animalisRMA6681 TTA--ATACGAA-----AGAG--------GGAACCGCGTGAACTGAAACA 425
F.nu.spp.animalisRMA6840 TTA--ATACGAA-----AGAG--------GGAACCGCGTGAACTGAAACA 425
F.simiaeATCC33568T TTA--ATACGAA-----AGAG--------GGAACCGCGTGAACTGAACCA 425
F.periodonticumATCC33693T TTA--ATACGAA-----AGAG--------GGAACCGCGTGAACTGAAACA 481
F.naviformeATCC25832T TTAATAC-CGAA-----AGAGG-------GAACCCGCGTGAACTGAAACA 418
F.russiATCC25533T TTA--GTACGAA-----AGAG--------GGAACCGGGTGAACTGAAACA 407
F.ne.spp.necrophorumATCC25286T TTT--ACACGAA-----AGAG--------GGAACCGGGTGAACTGAAACA 429
F.ne.spp.necrophorumNCTC10575 TTT--ACACGAA-----AGAG--------GGAACCGGGTGAACTGAAACA 429
F.ne.spp.necrophorumATCC27852 TTT--ACACGAA-----AGAG--------GGAACCGGGTGAACTGAAACA 429
F.ne.spp.fundulif.ATCC51357T TTT--ACACGAA-----AGAG--------GGAACCGGGTGAACTGAAACA 429
F.gonidiaformansATCC25563T TTT--ACACGAA-----AGAG--------GGAACCGGGTGAACTGAAACA 425
F.gonidiaformansRMA11653 TTT--ACACGAA-----AGAG--------GGAACCGGGTGAACTGAAACA 425
F.gonidiaformansRMA11660 TTT--ACACGAA-----AGAG--------GGAACCGGGTGAACTGAAACA 425
F.mortiferumATCC25557T TTA--GCACGAA-----AGAG--------GGTACCGAGTGAACTGAAACA 464
F.mortiferumATCC9817 TTA--GCACGAA-----AGAG--------GGTACCGAGTGAACTGAAACA 464
F.ulceransNCTC12111T TTA--GCACGAA-----AGAG--------GGTACCGAGTGAACTGAAACA 463
F.ulceransNCTC12112 TTA--GCACGAA-----AGAG--------GGTACCGAGTGAACTGAAACA 463
F.variumATCC8501TSeq.1 TTA--GCACGAA-----AGAG--------GGTACCGAGTGAACTGAAACA 461
F.variumATCC8501TSeq.2 TTA--GCACGAA-----AGAG--------GGTACCGAGTGAACTGAAACA 461
F.variumATCC27725 TTA--GCACGAA-----AGAG--------GGTACCGAGTGAACTGAAACA 461
F.necrogenesATCC25556T TTA--GCACGAA-----AGAG--------GGTACCGCGTGAACTGAAACA 495
F.perfoetensATCC29250T TTA--GTGTGAA-----AACG--------GTAACCAGATGAACTGAAACA 429
F.prausnitziiATCC27768T ATACTGAACTTAAAAATAGGTATATCGAGGGAACCGCCTGAACTGAAACA 583
F.prausnitziiATCC27766 ATACTGAACTTAAAAATAGGTATATCGAGGGAACCGCCTGAACTGAAACA 583
L.buccalisATCC14201T TAT--GCGTGAA-----AACG--------GTAAGCCCGTGAACTGAAACA 402
L.buccalisRMA2181 TAT--GCGTGAA-----AACG--------GTAAGCCCGTGAACTGAAACA 402
* * * * ********* **
F.nu.spp.nucleatumATCC25586T TCTAAGTAC-CGCGAGGAAAAGAAAGTAAAAA-CGATACCCAAAGTAGCG 477
F.nu.spp.nucleatumATCC23726 TCTAAGTAA-CGCGAGGAAAAGAAAGTAAAAA-CGATACCCAAAGTAGCG 464
F.nu.spp.fusiformeATCC51190T TCTAAGTAA-CGCGAGGAAAAGAAAGTAAAAA-CGATACCCAAAGTAGCG 463
F.nu.spp.polymorphumATCC10953T TCTAAGTAA-CGCGAGGAAAAGAAAGTAAAAA-CGATACCCAAAGTAGCG 474
F.nu.spp.polymorphumRMA7159 TCTAAGTAA-CGCGAGGAAAAGAAAGTAAAAA-CGATACCCAAAGTAGCG 474
F.nu.spp.vincentiATCC49256T TCTAAGTAA-CGCGAGGAAAAGAAAGTAAAAA-CGATACCCAAAGTAGCG 462
F.nu.spp.animalisATCC51191T TCTAAGTAA-CGTGAGGAAAAGAAAGTAAAAA-CGATACCCAAAGTAGCG 472
F.nu.spp.animalisRMA6681 TCTAAGTAA-CGCGAGGAAAAGAAAGTAAAAAACGATACCCAAAGTAGCG 474
F.nu.spp.animalisRMA6840 TCTAAGTAA-CTCCAGGAAAAGGAAGTAAAAA-CGATACCCAAAGTAGCG 473
F.simiaeATCC33568T TCTAAGTAA-CGCAAGGAAAAGAAAGTAAAAA-CGATACCCAAAGTAGCG 473
F.periodonticumATCC33693T TCTAAGTAC-CGCGAGGAAAAGAAAGTAAAAA-CGATACCCAAAGTAGCG 529
F.naviformeATCC25832T TCTAAGTAC-CGCGAGGAAAAGAAAGTAAAAA-CGATACCCAAAGTAGCG 466
F.russiATCC25533T TCTAAGTAA-CCTGAGGAAAAGAAAGTAAAAA-CGATACCCAAAGTAGCG 455
F.ne.spp.necrophorumATCC25286T TCTAAGTAATC-CGAGGAAAAGAAAGTAACAA-CGATACCCTAAGTAGCG 477
F.ne.spp.necrophorumNCTC10575 TCTAAGTAATC-CGAGGAAAAGAAAGTAACAA-CGATACCCTAAGTAGCG 477
F.ne.spp.necrophorumATCC27852 TCTAAGTAATC-CGAGGAAAAGAAAGTAACAA-CGATACCCTAAGTAGCG 477
F.ne.spp.fundulif.ATCC51357T TCTAAGTAATC-CGAGGAAAAGAAAGTAACAA-CGATACCCTAAGTAGCG 477
F.gonidiaformansATCC25563T TCTAAGTAA-CCCGAGGAAAAGAAAGTAACAA-CGATACCCTAAGTAGCG 473
F.gonidiaformansRMA11653 TCTAAGTAA-CCCGAGGAAAAGAAAGTAACAA-CGATACCCTAAGTAGCG 473
F.gonidiaformansRMA11660 TCTAAGTAA-CCCGAGGAAAAGAAAGTAACAA-CGATACCCTAAGTAGCG 473
F.mortiferumATCC25557T TCTAAGTAA-CTCGAGGAAAAGAAAGTAAAAA-CGATTCCCCAAGTAGCG 512
F.mortiferumATCC9817 TCTAAGTAA-CTCGAGGAAAAGAAAGTAAAAA-CGATTCCCCAAGTAGCG 512
F.ulceransNCTC12111T TCTAAGTAA-CTCGAGGAAAAGAAAGTAAAAA-CGATTCCCCAAGTAGCG 511
F.ulceransNCTC12112 TCTAAGTAA-CTCGAGGAAAAGAAAGTAAAAA-CGATTCCCCAAGTAGCG 511
F.variumATCC8501TSeq.1 TCTAAGTAA-CTCGAGGAAAAGAAAGTAAAAA-CGATTCCCCAAGTAGCG 509
F.variumATCC8501TSeq.2 TCTAAGTAA-CTCGAGGAAAAGAAAGTAAAAA-CGATTCCCCAAGTAGCG 509
F.variumATCC27725 TCTAAGTAA-CTCGAGGAAAAGAAAGTAAAAA-CGATTCCCCAAGTAGCG 509
F.necrogenesATCC25556T TCTAAGTAA-CGCGAGGAAAAGAAAGTAAAAA-CGATTCCCCAAGTAGCG 543
F.perfoetensATCC29250T TCTAAGTAGTCTCGAGGAAAAGAAAGTAAAAA-CGATTCCCTAAGTAGCG 478
F.prausnitziiATCC27768T TCTAAGTAGG-GCGAGGAAGAGACATCAAACG-AGATTCCGTAAGTAGTG 631
F.prausnitziiATCC27766 TCTAAGTAGG-GCGAGGAAGAGACATCAAACG-AGATTCCGTAAGTAGTG 631
L.buccalisATCC14201T TCTAAGTAA-CGGGAGGAAAAGAAAGTAAAAA-CGATTCCCTAAGTAGCG 450
L.buccalisRMA2181 TCTAAGTAA-CGGGAGGAAAAGAAAGTAAAAA-CGATTCCCTAAGTAGCG 450
******** ***** ** * ** *** ** ****** *
F.nu.spp.nucleatumATCC25586T GCGAGCGAACTGGGTC-AAGCCTAAA-C-CTTA-AATATGTCAAGGATAC 523
F.nu.spp.nucleatumATCC23726 GCGAGCGAACTGGGTC-AAGCCTAAA-C-CTTA-AATATGTCAAGGATAC 510
F.nu.spp.fusiformeATCC51190T GCGAGCGAACTGGGTC-AAGCCTAAA-C-CTTA-AATATGTCAAGGATAC 509
F.nu.spp.polymorphumATCC10953T GCGAGCGAAATGGGTC-AAGCCTAAA-C-CTTA-AATATGNCAAGGATAC 520
F.nu.spp.polymorphumRMA7159 GCGAGCGAAATGGGTC-AAGCCTAAA-C-CTTA-AATATGTCAAGGATAC 520
F.nu.spp.vincentiATCC49256T GCGAGCGAACTGGGTC-AAGCCTAAA-C-CTTA-AATATGTCAAGGATAC 508
F.nu.spp.animalisATCC51191T GCGAGCGAACTGGGTC-AAGCCTAAA-C-CTTA-AATATGTCAAGGATAC 518
F.nu.spp.animalisRMA6681 GCGAGCGAACTGGGTC-AAGCCTAAA-C-CTTA-AATATGTCAAGGATAC 520
F.nu.spp.animalisRMA6840 GCGAGCGAACTGGGTC-AAGCCTAAA-C-CTTA-AATATGTCAAGGATAC 519
F.simiaeATCC33568T GCGAGCGAACTGGGTC-AAGCCTAAA-C-CTTA-AATATGTCAAGGATAC 519
F.periodonticumATCC33693T GCGAGCGAA-TGGGTC-AAGCCTAAA-C-CTTA-AATATGTCAAGGATAC 574
F.naviformeATCC25832T GCGAGCGAACTGGGTC-AAGCCTAAA-C-CTTA-AATATGTCAAGGATAC 512
F.russiATCC25533T GCGAGCGAAATGGGTC-AAGCCCAAA-C-CTTAATGCGTGTCAAGGATAC 502
F.ne.spp.necrophorumATCC25286T GCGAGCGAACGGGGTA-GAGCCTAAA-C-CGTA-TTCATGTCAAGGATGC 523
F.ne.spp.necrophorumNCTC10575 GCGAGCGAACGGGGTA-GAGCCTAAA-C-CGTA-TTCATGTCAAGGATGC 523
F.ne.spp.necrophorumATCC27852 GCGAGCGAACGGGGTA-GAGCCTAAA-C-CGTA-TTCATGTCAAGGATGC 523
F.ne.spp.fundulif.ATCC51357T GCGAGCGAACGGGGTA-GAGCCTAAA-C-CGTA-TTCATGTCAAGGATGC 523
F.gonidiaformansATCC25563T GCGAGCGAACGGGGTA-GAGCCTAAA-C-CATA-TTCATGTCAAGGATGC 519
F.gonidiaformansRMA11653 GCGAGCGAACGGGGTA-GAGCCTAAA-C-CATA-TTCATGTCAAGGATGC 519
F.gonidiaformansRMA11660 GCGAGCGAACGGGGTA-GAGCCTAAA-C-CATA-TTCATGTCAAGGATGC 519
F.mortiferumATCC25557T GCGAGCGAACGGGGAT-GAGCCTAAA-C-CATA-TAAGTGTCAAGGATAC 558
F.mortiferumATCC9817 GCGAGCGAACGGGGAT-GAGCCTAAA-C-CATA-TAAGTGTCAAGGATAC 558
F.ulceransNCTC12111T GCGAGCGAACGGGGAT-GAGCCTAAA-C-CATA-TAAGTGTCAAGGATAC 557
F.ulceransNCTC12112 GCGAGCGAACGGGGAT-GAGCCTAAA-C-CATA-TAAGTGTCAAGGATAC 557
F.variumATCC8501TSeq.1 GCGAGCGAACGGGGAT-GAGCCTAAA-CNCATA-TAAGTGTCAAGGATAC 556
F.variumATCC8501TSeq.2 GCGAGCGAACGGGGAT-GAGCCTAAA-CNCATA-TAAGTGTCAAGGATAC 556
F.variumATCC27725 GCGAGCGAACGGGGAT-GAGCCTAAA-C-CATA-TAAGTGTCAAGGATAC 555
F.necrogenesATCC25556T GCGAGCGAACGGGGAT-GAGCCCAAA-C-CGCA-TAAATGTCAAGGATGC 589
F.perfoetensATCC29250T GCGAGCGAACGGGGACCAAGTCTAAATCGCGTA---AGTGTCAAGAATGC 525
F.prausnitziiATCC27768T GCGAGCGAACGCGGAAGAGGGCAAA--C-CGGA-----AGT-AGAAATAC 672
F.prausnitziiATCC27766 GCGAGCGAACGCGGAAGAGGGCAAA--C-CGGA-----AGT-AGAAATAC 672
L.buccalisATCC14201T GCGAGCGAACGGGGAT-AAGCCTAAA-C-CGTG-TCAGTGTCAAGCGGAC 496
L.buccalisRMA2181 GCGAGCGAACGGGGAT-AAGCCTAAA-C-CGTG-TCAGTGTCAAGCGGAC 496
********* ** * * ** * * * * *
F.nu.spp.nucleatumATCC25586T A-GCCGTTGTATTTAAGGGGTAGAGGGACAAAG-TAGTGAAGAACTGTAA 571
F.nu.spp.nucleatumATCC23726 A-GCCGTTGTATTTAAGGGGTAGAGGGACAAAG-TAGTGAAGAACTGTAA 558
F.nu.spp.fusiformeATCC51190T A-GCCGTTGTATTTAAGGGGTTGAGGGACAGAG-TTGTGAAGAACTGTAA 557
F.nu.spp.polymorphumATCC10953T A-GCCGTTGTATTTAAGGGGTTGTGGGACAGAGTGA-TGAAGAACTGTAA 568
F.nu.spp.polymorphumRMA7159 A-GCCGTTGTATTTAAGGGGTTGTGGGACAGAGTGA-TGAAGAACTGTAA 568
F.nu.spp.vincentiATCC49256T A-GCCGTTGTATTTAAGGGGTTGAGGGACAGAG--TGTGAAGAACTGTAA 555
F.nu.spp.animalisATCC51191T A-GCCGTTGTATTTAAGGGGTTGAGGGACAAAG-TAGTGAAGAACTGTAA 566
F.nu.spp.animalisRMA6681 A-GCCGTTGTATTTAAGGGGTAGAGGGACAGAG-TGGTGAAGAACTGTAA 568
F.nu.spp.animalisRMA6840 A-GCCGTTGTATTTAAGGNGTAGAGGGACAGAG-TAGTGAAGAACTGTAA 567
F.simiaeATCC33568T A-GCCGTTGTATTTAAGGGGTAGAGGGACAGAG-TAGTGAAGAACTGTAA 567
F.periodonticumATCC33693T A-GCCGTTGTATTTAGGGGGTTGAGGGACAGAGTAG-TGAAGAACTGTAA 622
F.naviformeATCC25832T A-GCCGTTGTATTTAAGGGGTTGAGGGACAGAGTG--TGAAGAACTGTAA 559
F.russiATCC25533T A-GCCGTTGCGCATAAGGGGTAGAGGGACAAGATGA-TGAAGAACTGTAA 550
F.ne.spp.necrophorumATCC25286T A-GCCGTTGTGGATATGGGGTAGCGGGAAAGAGAGA-GAAAGAACTGCAA 571
F.ne.spp.necrophorumNCTC10575 A-GCCGTTGTGGATATGGGGTAGCGGGAAAGAGAGA-GAAAGAACTGCAA 571
F.ne.spp.necrophorumATCC27852 A-GCCGTTGTGGATACGGGGTAGCGGGAAAGAGAGA-GAAAGAACTGCAA 571
F.ne.spp.fundulif.ATCC51357T A-GCCGTTGTGGATATGGGGTAGCGGGAAAGAGAAA-GAAAGAACTGCAA 571
F.gonidiaformansATCC25563T A-GCCGTTGTGGATATGGGGTANCGGGAAAGAGAAT-GGAAGAACTGCAA 567
F.gonidiaformansRMA11653 A-GCCGTTGTGGATATGGGGTAGCGGGAAAGAGAAT-GGAAGAACTGCAA 567
F.gonidiaformansRMA11660 A-GCCGTTGTGGATATGGGGTAGCGGGAAAGAGAAT-GGAAGAACTGCAA 567
F.mortiferumATCC25557T AAGCCGTTGCTTATATGGGGTTGTGGGAAGAACGTT-TGAAGAACTGTAA 607
F.mortiferumATCC9817 AAGCCGTTGCTTATATGGGGTTGTGGGAAGAACGTT-TGAAGAACTGTAA 607
F.ulceransNCTC12111T A-GCCGTTGCTTATATGGGGTTGTGGGAAGAACGTT-TGAAGAACTGTAA 605
F.ulceransNCTC12112 A-GCCGTTGCTTATATGGGGTTGTGGGAAGAACGTT-TGAAGAACTGTAA 605
F.variumATCC8501TSeq.1 A-GCCGTTGCTTATATGGGGTTGTGGGAAGAACGTT-TGAAGAACTGTAA 604
F.variumATCC8501TSeq.2 A-GCCGTTGCTTATATGGGGTTGTGGGAAGAACGTT-TGAAGAACTGTAA 604
F.variumATCC27725 AAGCCGTTGCTTATATGGGGTTGTGGGAAGAACGTT-TGAAGAACTGTAA 604
F.necrogenesATCC25556T A-GCCGTTGTTTATGCGGGGTTGTGGGAAGAAC-TA-TGAGGAACTGCAA 636
F.perfoetensATCC29250T A-GTCGTTGCTTACGCGAGGTTGTGGGAAG--CTTTTTGAAGAACTGCAA 572
F.prausnitziiATCC27768T T-TCC-----------GGGGT--ACGGACCGCATTT----AGGACT-TGA 703
F.prausnitziiATCC27766 T-TCC-----------GGGGT--ACGGACCGCATTT----AGGACT-TGA 703
L.buccalisATCC14201T A-G-CATTGCTGACACGGGGTTGTGGGACTTCCAT--TAACGGATTGTCA 542
L.buccalisRMA2181 A-G-CATTGCTGACACGGGGTTGTGGGACTTCCAT--TAACGGATTGTCA 542
* * ** *** * * * *
F.nu.spp.nucleatumATCC25586T GATATTCAATATA-GTGTATTGAT-GAATTAGAATTGTCTGGAAAGATGA 619
F.nu.spp.nucleatumATCC23726 GATATTCAATATA-GTGTATTGAT-GAATTAGAATTGTCTGGAAAGATGA 606
F.nu.spp.fusiformeATCC51190T GATATTCAATATA-GTGTATTGAT-GAATTAGAATTGTCTGGAAAGGTGA 605
F.nu.spp.polymorphumATCC10953T GATATTCAATATA-GTGTATTGAT-GAATTAGAATTGTCTGGAAAGGTGA 616
F.nu.spp.polymorphumRMA7159 GATATTCAATATA-GTGTATTGAT-GAATTAGAATTGTCTGGAAAGGTGA 616
F.nu.spp.vincentiATCC49256T GATATTCAATATA-GTGTATTGAT-GAATTAGAATTGTCTGGAAAGATNA 603
F.nu.spp.animalisATCC51191T GATATTCAATATA-GTGTATTGAT-GAATTAGAATTGTATGGAAAGATAA 614
F.nu.spp.animalisRMA6681 GATATTCAATATA-GTGTATTGAT-GAATTAGAATTATCTGGAAAGGTAA 616
F.nu.spp.animalisRMA6840 GATATTCAATATA-GTGTATTGAT-GAATTAGAATTGTCTGGAAAGGTGA 615
F.simiaeATCC33568T GATATTCAATATA-GTGTATTGAT-GAATTAGAATTGTCTGGAAAGGTGA 615
F.periodonticumATCC33693T GATATTCAATATA-GTGTATTGAT-GAATTGGAATTGTCTGGAAAGGCGA 670
F.naviformeATCC25832T GATATTCAATATA-GTGTATTGAT-GAATTAGAATTGTCTGGAAAGATGA 607
F.russiATCC25533T GCTATTCAGTATG-AAGTATTG-CCTAACTAAAATTATCTGGAAAGGTAG 598
F.ne.spp.necrophorumATCC25286T GCTATTTCGCAGACGT-AAGCAAAGGAACAAGAAAGATCTGGAAAGGTCT 620
F.ne.spp.necrophorumNCTC10575 GCTATTTCGCAGACGT-AAGCAAAGGAACAAGAAAGATCTGGAAAGGTCT 620
F.ne.spp.necrophorumATCC27852 GCTATTTCGCAGACGT-AAGCAAAGGAACAAGAAAGATCTGGAAAGGTCT 620
F.ne.spp.fundulif.ATCC51357T GCTATTTCGCAGACGT-AAGCAAAGGAACAAGAAAGATCTGGAAAGGTCT 620
F.gonidiaformansATCC25563T GATATTCCGCAGA-GTCAAGCAAAAGAACAAGAAAGATCTGGAAAGGTCT 616
F.gonidiaformansRMA11653 GATATTCCGCAGA-GTCAAGCAAAAGAATAAGAAAGATCTGGAAAGGTCT 616
F.gonidiaformansRMA11660 GATATTCCGCAGA-GTCAAGCAAAAGAACAAGAAAGATCTGGAAAGGTCT 616
F.mortiferumATCC25557T GATATTCAACATA--TCTAATGACCGAACTGGAACTAGTTGGAAAGCTAG 655
F.mortiferumATCC9817 GATATTCAACATA--TCTAATGACCGAACTGGAACTAGTTGGAAAGCTAG 655
F.ulceransNCTC12111T GATATTCAACATA--TCTAATGACCGAACTGGAACTAGTTGGAAAGCTAG 653
F.ulceransNCTC12112 GATATTCAACATA--TCTAATGACCGAACTGGAACTAGTTGGAAAGCTAG 653
F.variumATCC8501TSeq.1 GATATTCAACATA--TCTAATGACCGAACTGGAACTAGTTGGAAAGCTAG 652
F.variumATCC8501TSeq.2 GATATTCAACATA--TCTAATGACCGAACTGGAACTAGTTGGAAAGCTAG 652
F.variumATCC27725 GATATTCAACATA--TCTAATGACCGAACTGGAACTAGTTGGAAAGCTAG 652
F.necrogenesATCC25556T CGTACTCAACAAT-GTTAA-TGACTGAACTGGAACTAGTTGGAAAGCTAG 684
F.perfoetensATCC29250T GATATTCAACG-A-GTTGTTTCAAAGAATTAGAATAAGTTGGAAAACTTA 620
F.prausnitziiATCC27768T GTTGTTA---------------ACCGAAC-GGCA-----TGGGAAGGCCG 732
F.prausnitziiATCC27766 GTTGTTA---------------ACCGAAC-GGCA-----TGGGAAGGCCG 732
L.buccalisATCC14201T --TAATGTTTA-AGTTGTATGTATGTAAGTAGAATCAGTTGGGAAGCTGA 589
L.buccalisRMA2181 --TAATGTTTA-AGTTGTATGTATGTAAGTAGAATCAGTTGGGAAGCTGA 589
* * ** * *** **
F.nu.spp.nucleatumATCC25586T ACCGCAGAAGGTGAAAGTC-CTGTATAA-GTAAA-TCCTTACACATATAA 666
F.nu.spp.nucleatumATCC23726 ACCGCAGAAGGTGAAAGTC-CTGTATAA-GTAAA-TCCTTACACATATAA 653
F.nu.spp.fusiformeATCC51190T ACCGCAGAAGGTGAAAGTC-CTGTATAA-GTAAA-TCCTTACACATATAA 652
F.nu.spp.polymorphumATCC10953T ACCGCAGAAGGTGAAAGTC-CTGTATAA-GTAAA-TCCTTACACATATAA 663
F.nu.spp.polymorphumRMA7159 ACCGCAGAAGGTGAAAGTC-CTGTATAA-GTAAA-TCCTTACACATATAA 663
F.nu.spp.vincentiATCC49256T ACCGNAGAAGGTGAAAGTC-CTGTATAA-GTAAA-TCCTTACACATATAA 650
F.nu.spp.animalisATCC51191T ACCGCAGAAGGTGAGAGTC-CTGTATAA-GTAAA-TCCTTACACATATAA 661
F.nu.spp.animalisRMA6681 ACCGTAGAAGGTGAGAGTC-CTGTATAA-GTAAA-TCCTTACACATATAA 663
F.nu.spp.animalisRMA6840 ACCGTAGAAGGTGAAAGTC-CTGTATAA-GTAAA-TCCTTACACATATAA 662
F.simiaeATCC33568T ACCGTAGAAGGTGAAAGTC-CTGTATAA-GTAAA-TCCTTACACATATAA 662
F.periodonticumATCC33693T ACCGTAGAAGGTGAAAGTC-CTGTACAA-GTAAA-TCNTTACACATATAA 717
F.naviformeATCC25832T ACCGCAGAAGGTGAAAGTC-CTGTATAA-GTAAA-TCCTTACACATATAA 654
F.russiATCC25533T ACCGTAGAAGGTGAAAGTC-CTGTATAG-GTAAA-GCAATGCGCATATAA 645
F.ne.spp.necrophorumATCC25286T ACCGTAGAAGGTGAAAGTC-CTGTATTG-GTAGTTTTCTTGCGC-TGTAT 667
F.ne.spp.necrophorumNCTC10575 ACCGTAGAAGGTGAAAGTC-CTGTATTG-GTAGTTTTCTTGCGC-TGTAT 667
F.ne.spp.necrophorumATCC27852 ACCGTAGAAGGTGAAAGTC-CTGTATTG-GTAGTTTTCTTGCGC-TGTAT 667
F.ne.spp.fundulif.ATCC51357T ACCGTAGAAGGTGAAAGTC-CTGTATTG-GTAGTTTTCTTGCGC-TGTAT 667
F.gonidiaformansATCC25563T ACCGAAGAAGGTGAAAGTC-CTGTATTG-GTACATTGCTT-GCGCTGTTT 663
F.gonidiaformansRMA11653 ACCGAAGAAGGTGAAAGTC-CTGTATTG-GTACATTGCTT-GCGCTGTTT 663
F.gonidiaformansRMA11660 ACCGAAGAAGGTGAAAGTC-CTGTATTG-GTACATTGCTT-GCGCTGTTT 663
F.mortiferumATCC25557T ATCGTAGAAGGTGATAATC-CTGTACAG-GTAAACTCATTAGA-ATGTAT 702
F.mortiferumATCC9817 ATCGTAGAAGGTGATAATC-CTGTACAG-GTAAACTCATTAGA-ATGTAT 702
F.ulceransNCTC12111T ATCGTAGAAGGTGATAATC-CTGTACAG-GTAAACTCATTAGA-ATGTAT 700
F.ulceransNCTC12112 ATCGTAGAAGGTGATAATC-CTGTACAG-GTAAACTCATTAGA-ATGTAT 700
F.variumATCC8501TSeq.1 ATCGTAGAAGGTGATAATC-CTGTACAG-GTAAACTCATTAGA-ATGTAT 699
F.variumATCC8501TSeq.2 ATCGTAGAAGGTGATAATC-CTGTACAG-GTAAACTCATTAGA-ATGTAT 699
F.variumATCC27725 ATCGTAGAAGGTGATAATC-CTGTACAG-GTAAACTCATTAGA-ATGTAT 699
F.necrogenesATCC25556T ATCGTAGAAGGTGATAATC-CTGTACAG-GTAAACTCATTAAC-TTGTCC 731
F.perfoetensATCC29250T ACCATAGAAGGTGATAGTC-CTGTATAG-GTA-ATTTGTAACAATCGTAA 667
F.prausnitziiATCC27768T GTCAGAGAGTGTGAGAACCAC-GTAG---GTGAAAACGACA-AGAGCTGA 777
F.prausnitziiATCC27766 GTCAGAGAGTGTGAGAACCAC-GTAG---GTGAAAACGACA-AGAGCTGA 777
L.buccalisATCC14201T ACCAAAGAAGGTGATAGTC-CTGTAGAACATAAAATATATATA-ACAACT 637
L.buccalisRMA2181 ACCAAAGAAGGTGATAGTC-CTGTAGAACATAAAATATATATA-ACAACT 637
* *** **** * * * *** *
F.nu.spp.nucleatumATCC25586T CTTTGCTCCCAAGTAACATGGAACACGAGGAATTCTGTGTGAATCAGTGA 716
F.nu.spp.nucleatumATCC23726 CTTTGCTCCCAAGTAACATGGAACACGAGGAATTCTGTGTGAATCAGTGA 703
F.nu.spp.fusiformeATCC51190T CTTTGCTCCCAAGTAACATGGAACACGAGGAATTCTGTGTGAATCAGTGA 702
F.nu.spp.polymorphumATCC10953T CTTTGCTCCCAAGTAACATGGAACACGAGGAATTCTGTGTGAATCAGTGA 713
F.nu.spp.polymorphumRMA7159 CTTTGCTCCCAAGTAACATGGAACACGAGGAATTCTGTGTGAATCAGTGA 713
F.nu.spp.vincentiATCC49256T CTTTGCTCCCAAGTAACATGGAACACGAGGAATTCTGTGTGAATCTGTGA 700
F.nu.spp.animalisATCC51191T CTTTGCTCCCAAGTAACATGGAACACGAGGAATTCTGTGTGAATCAGTGA 711
F.nu.spp.animalisRMA6681 CTTTGCTCCCAAGTAACATGGAACACGAGGAATTCTGTGTGAATCAGTGA 713
F.nu.spp.animalisRMA6840 CTTTGCTCCCAAGTAACATGGAACACGAGGAATTCTGTGTGAATCAGTGA 712
F.simiaeATCC33568T CTTTGCTCCCAAGTAACATGGAACACGAGGAATTCTGTGTGAATCAGTGA 712
F.periodonticumATCC33693T CTCTGCTCCCAAGTAACATGGAACACGAGGAATTCTGTGTGAATCTGTGA 767
F.naviformeATCC25832T CTTTGCTCCCAAGTAACATGGAACACGAGGAATTCTGTGTGAATCAGTGA 704
F.russiATCC25533T TCTTGCTCCCAAGTAACATGGAACACGAGGAATTCTGTGTGAATCAGTGA 695
F.ne.spp.necrophorumATCC25286T CTCTTCTCCCAAGTAATGTGGAACACGAGGAATTCTGCATGAATCTGCGA 717
F.ne.spp.necrophorumNCTC10575 CTCTTCTCCCAAGTAATGTGGAACACGAGGAATTCTGCATGAATCTGCGA 717
F.ne.spp.necrophorumATCC27852 CTCTTCTCCCAAGTAATGTGGAACACGAGGAATTCTGCATGAATCTGCGA 717
F.ne.spp.fundulif.ATCC51357T CTCTTCTCCCAAGTAATGTGGAACACGAGGAATTCTGCATGAATCTGCGA 717
F.gonidiaformansATCC25563T CTCTTCTCCCAAGTAATGTGGAACACGAGGAATTCTGCATGAATCAGCGA 713
F.gonidiaformansRMA11653 CTCTTCTCCCAAGTAATGTGGAACACGAGGAATTCTGCATGAATCAGCGA 713
F.gonidiaformansRMA11660 CTCTTCTCCCAAGTAATGTGGAACACGAGGAATTCTGCATGAATCAGCGA 713
F.mortiferumATCC25557T GTTCTCTCCCAAGTAACATGGAACACGAGGAATTCTGTGTGAATCTGCGA 752
F.mortiferumATCC9817 GTTCTCTCCCAAGTAACATGGAACACGAGGAATTCTGTGTGAATCTGCGA 752
F.ulceransNCTC12111T GTTCTCTCCCAAGTAACATGGAACACGAGGAATTCTGTGTGAATCTGCGA 750
F.ulceransNCTC12112 GTTCTCTCCCAAGTAACATGGAACACGAGGAATTCTGTGTGAATCTGCGA 750
F.variumATCC8501TSeq.1 GTTNTNTCCCAAGTAACTTGGAACACGAGGAATTCTGTGTGAATCTGCGA 749
F.variumATCC8501TSeq.2 GTTNTNTCCCAAGTAACNTGGAACACGAGGAATTCTGTGTGAATCTGCGA 749
F.variumATCC27725 GTTCTCTCCCAAGTAACATGGAACACGAGGAATTCTGTGTGAATCTGCGA 749
F.necrogenesATCC25556T GTTCTCTCCCAAGTAACATGGAACACGAGGAATTCTGTGTGAATCTGCGA 781
F.perfoetensATCC29250T AGCT-CTCCCGAGTAGCACGGAACACGAGGAATTCTGTGTGAATCAGCGA 716
F.prausnitziiATCC27768T GCGAGTTCCAGAGTACGGCCAGACACGTGAAACCTGGTCGGAATACGGGG 827
F.prausnitziiATCC27766 GCGAGTTCCAGAGTACGGCCAGACACGTGAAACCTGGTCGGAATACGGGG 827
L.buccalisATCC14201T GGAAGCACCCGAGTAGCGTCAGGCACGAGGAATCTGGCGTGAATCAGCGT 687
L.buccalisRMA2181 GGAAGCACCCGAGTAGCGTCAGGCACGAGGAATCTGGCGTGAATCAGCGT 687
** **** **** * ** * **** * *
F.nu.spp.nucleatumATCC25586T GGACCAAATCTCATAAGGCTAAATACTCT--------------------- 745
F.nu.spp.nucleatumATCC23726 GGACCAAATCTCATAAGGCTAAATACTCT--------------------- 732
F.nu.spp.fusiformeATCC51190T GGACCAAATCTCATAAGGCTAAATACTCT--------------------- 731
F.nu.spp.polymorphumATCC10953T GGACCATATCTCATAAGGCTAAATACTCT--------------------- 742
F.nu.spp.polymorphumRMA7159 GGACCATATCTCATAAGGCTAAATACTCT--------------------- 742
F.nu.spp.vincentiATCC49256T GGACCATATCTCATAAGGCTAAATACTCT--------------------- 729
F.nu.spp.animalisATCC51191T GGACCATATCTCATAAGGCTAAATACTCT--------------------- 740
F.nu.spp.animalisRMA6681 GGACCATATCTCATAAGGCTAAATACTCT--------------------- 742
F.nu.spp.animalisRMA6840 GGACCATATCTCATAAGGCTAAATACTCT--------------------- 741
F.simiaeATCC33568T GGACCATATCTCATAAGGCTAAATACTCT--------------------- 741
F.periodonticumATCC33693T GGACCATATCTCATAAGGCTAAATACTCT--------------------- 796
F.naviformeATCC25832T GGACCATATCTCATAAGGCTAAATACTCT--------------------- 733
F.russiATCC25533T GGACCATATCTCATAAGGCTAAATACTCT--------------------- 724
F.ne.spp.necrophorumATCC25286T GGACCAAATCTCGTAAGGCTAAATACTCT--------------------- 746
F.ne.spp.necrophorumNCTC10575 GGACCAAATCTCGTAAGGCTAAATACTCT--------------------- 746
F.ne.spp.necrophorumATCC27852 GGACCAAATCTCGTAAGGCTAAATACTCT--------------------- 746
F.ne.spp.fundulif.ATCC51357T GGACCAAATCTCGTAAGGCTAAATACTCT--------------------- 746
F.gonidiaformansATCC25563T GGACCAAATCTCGTAAGGCTAAATACTCT--------------------- 742
F.gonidiaformansRMA11653 GGACCAAATCTCGTAAGGCTAAATACTCT--------------------- 742
F.gonidiaformansRMA11660 GGACCAAATCTCGTAAGGCTAAATACTCT--------------------- 742
F.mortiferumATCC25557T GGACCATATCTCGTAAGGCTAAATACTCT--------------------- 781
F.mortiferumATCC9817 GGACCATATCTCGTAAGGCTAAATACTCT--------------------- 781
F.ulceransNCTC12111T GGACCATATCTCGTAAGGCTAAATACTCT--------------------- 779
F.ulceransNCTC12112 GGACCATATCTCGTAAGGCTAAATACTCT--------------------- 779
F.variumATCC8501TSeq.1 GGACCATATNTCGTAAGGCTAAATACTCT--------------------- 778
F.variumATCC8501TSeq.2 GGACCATATNTCGTAAGGCTAAATACTCT--------------------- 778
F.variumATCC27725 GGACCATATCTCGTAAGGCTAAATACTCT--------------------- 778
F.necrogenesATCC25556T GGACCATATCTCCTAAGGCTAAATACTCT--------------------- 810
F.perfoetensATCC29250T GGACCATATCTCGTAAGACTAAATACTCT--------------------- 745
F.prausnitziiATCC27768T GGACCACC-CTCC-AACCCTAAATACTAC--------------------- 854
F.prausnitziiATCC27766 GGACCACC-CTCC-AACCCTAAATACTAC--------------------- 854
L.buccalisATCC14201T GGACCATGTCACGTAAGGCTAAATACTGT--------------------- 716
L.buccalisRMA2181 GGACCATGTCACGTAAGGCTAAATACTGT--------------------- 716
****** * ** ********* ************* **
