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International Journal of Systematic and Evolutionary Microbiology vol. 51, part 6, pp. 2037-2048
The program SimPlot was used to look for possible reasons for the unstable behaviour of some sequences. Pairwise similarities were plotted for a 100 bp sliding window along the length of each gene, and bootscanning analyses were made to highlight changes in support of different tree topologies. Sequences were grouped by genus, with Agrobacterium and Rhizobium combined.
The similarity plots for recA show an anomalous region of high divergence between Brevundimonas and Rickettsia sequences centred around 180 bp into the sequence. Only in the central 100 bp of the sequence does the bootscan show strong support for the partition of Rhodobacter with Rickettsia (i.e. for Rhodobacter as the deepest branch as shown in Fig. 2). Elsewhere, Brevundimonas or Phyllobacterium also gain support. These observations suggest that the position of these taxa may be influenced by the specific choice of Rickettsia as the outgroup, and indeed, when Rickettsia is removed, the bootscan shows Brevundimonas unambiguously partitioned with Rhodobacter in the 3´ half of the sequence, while the 5´ half tends to group with Mesorhizobium. The corresponding neighbour-joining phylogeny places Brevundimonas next to Rhodobacter while Phyllobacterium moves into the Rhizobium–Agrobacterium clade, though support remains low. The position of the other taxa is unaltered. The apparently chimeric nature of the Brevundimonas and possibly Phyllobacterium sequences was explored in a four-taxon bootscan with Brevundimonas bullata, Rhodobacter capsulatus, Mesorhizobium loti and Phyllobacterium rubiacearum. While the bootscan strongly indicated the pairing of Brevundimonas with Mesorhizobium in the first half and Rhodobacter in the second half of the sequence, an examination of the distribution of the 35 phylogenetically informative sites did not reveal a clear breakpoint indicative of recombination.
A clearer result was obtained for the SSU sequence of Rhizobium galegae in a comparison with Agrobacterium tumefaciens, Rhizobium tropici A and Rhizobium leguminosarum (Supplementary Fig. 1). The anomaly in these sequences has been noted previously (Eardly et al., 1996; Young & Haukka, 1996), but SimPlot reveals more detail. The Rhizobium galegae sequence is most similar to that of Agrobacterium tumefaciens throughout the 5´ half of the sequence, but this similarity suddenly plummets between positions 900 and 1100 (Supplementary Fig. 1a). In the centre of this region is a cluster of eight phylogenetically informative sites, seven of which support the pairing of Rhizobium galegae with Rhizobium leguminosarum (Supplementary Fig. 1b) These are the only informative sites in the whole sequence that do not support the pairing of Rhizobium galegae with Agrobacterium tumefaciens. Unfortunately, there are no other informative sites nearby, so it is not possible to define the size of this potentially recombinant region with any precision: it could be as little as 50 bp but might be almost 500 bp.
Supplementary Fig. 1. Comparison of the SSU sequence of Rhizobium galegae with those of Agrobacterium tumefaciens (A), Rhizobium leguminosarum (B) and Rhizobium tropici (C). (a) Similarity within a 200 bp sliding window (20 bp steps) along the alignment. (b) Distribution of phylogenetically informative sites supporting the four-taxon trees in which Rhizobium galegae is paired with Agrobacterium tumefaciens (A) or with Rhizobium leguminosarum (B). No sites support the third alternative. (c) Bootscan showing percentages of 100 bootstrap replicates that support each of the three trees, for a 200 bp sliding window.
Eardly, B. D., Wang, F.-S. & van Berkum, P. (1996). Corresponding 16S rRNA gene segments in Rhizobiaceae and Aeromonas yield discordant phylogenies. Plant Soil 186, 69–74.
Young, J. P. W. & Haukka, K. E. (1996). Diversity and phylogeny of rhizobia. New Phytol 133, 87–94.
The sequences submitted to the EMBL database are shown in FastA format. The EMBL accession numbers for the atpD gene sequences are AJ294386–AJ294409 and for recA are AJ294363–AJ294385. For phylogenetic analyses, the sequences were aligned as indicated by the gaps. The whole of the atpD alignment was used while, for recA, positions 60–500 were used because this region was available for all species.
>Phrub_atpD [org=Phyllobacterium rubiacearum] [strain=ATCC 43591] CCGATCAAAACGAAGCTGACCCGCGCCATCCACCAGGAGGCTCCGGCATA TGTCGAGCAGTCGACGGAAGCCCAGATCCTGGTGACCGGCATCAAGGTTA TCGATCTGCTCGCGCCTTATGCACGCGGCGGCAAGATCGGCCTGTTCGGC GGTGCCGGCGTTGGCAAGACGGTTCTGATCATGGAACTGATCAACAACGT GGCCAAGGCGCACGGCGGTTACTCGGTGTTTGCCGGCGTGGGTGAACGTA CCCGCGAAGGCAACGACCTCTATCACGAAATGATCGAATCCGGCGTGAAC ---------------AAGGCCGGCGGCGGTGAAGGCTCCAAGGCCGCACT GGTTTACGGTCAGATGAACGAGCCGCCAGGTGCCCGCGCCCGCGTTGCGC TTTCCGGTCTGACGGTTGCGGAGCATTTCCGCGATGAA---GGCCAGGAC GTTTTGTTCTT >Phmyr_atpD [org=Phyllobacterium myrsinacearum] [strain=ATCC 43590] CCGATCAAGACGAAGCTGACCCGCGCTATCCACCAGGAGGCTCCGGCATA TGTCGAGCAGTCGACGGAAGCCCAGATCCTGGTGACCGGCATCAAGGTTA TCGATCTGCTCGCGCCTTATGCGCGCGGCGGCAAGATCGGCCTGTTCGGC GGCGCCGGCGTCGGCAAGACGGTTCTGATCATGGAACTGATCAACAACGT GGCCAAGGCGCACGGCGGTTACTCGGTGTTTGCCGGCGTGGGTGAACGTA CCCGCGAAGGCAACGACCTCTATCACGAAATGATCGAATCCGGCGTGAAC ---------------AAGGCCGGTGGCGGTGAAGGCTCCAAGGCCGCACT GGTTTACGGTCAGATGAACGAGCCGCCAGGTGCCCGCGCCCGCGTTGCGC TTTCCGGTCTGACGGTTGCGGAGCATTTCCGCGATGAA---GGCCAGGAC GTTCTGTTCTT >Brjap_atpD [org=Bradyrhizobium japonicum] [strain USDA6] CCGATCAAGTCCGAAGGTGTGCGCGCCATCCATCAGGAGGCGCGGACTAA CACCGACCAGTCGACCGAAGCTGAAATTcTCGTCACCGGCATCAAGGTCG TCGATCTCCTTACTCCCTATGCGAAGGGCGGCAAGATCGGCCTGTTCGGC GGCGCCGGCGTTGGCAAGACCGTGCTGATTCAGGAGCTGATCAACAACGT CGCGAAGGCGCACGGCGGTTACTCCGTGTTCGCCGGCGTCGGCGAGCGTA CCCGCGAAGGCAACGACCTCTATCACGAGTTCATCGAGTCCAAGGTCAAC GCCGATCCGCAC---AATCCGGATCCGAGCGTGAAGTCGAAGTGCGCGCT GGTGTTCGGCCAGATGAACGAGCCGCCGGGCGCCCGCGCCCGCGTCGGCC TCACGGGTCTCACCGTCGCCGAACACTTCCGCGACCAG---GGCCAGGAC KTGCTKTTCTT >Azcau_atpD [org=Azorhizobium caulinodans] [strain=USDA 4892] CCGGTGGTCGGCGAGGCCAAGCGCGCCATTCACCAGCAGGCTCCGTCCTA TTCCGAGCAGTCCACGGAAGCCGARATGCTCGTCACGGGCATCAAGGTGG TGGACCTGCTGGCGCCTTATTCCAAGGGCGGCAAGATCGGCCTGTTCGGC GGCGCCGGCGTGGGCAAGACCGTGCTCATCATGGAGCTCATCAACAACAT CGCGAAGGCGCACGGCGGCTACTCCGTGTTCGCCGGCGTCGGTGAGCGCA CCCGCGAGGGCAaCGATCTCTATCACGAGATGATCGAGTCCAAGGTGAAC GTGGACCCGCACGAGAACAACGGCTCGTCCGCCGGCTCCAAGTGCGCCCT CGTGTACGGCCAGATGAACGAGCCTCCGGGCGCCCGCGCCCGCGTCGCGC TCACCGGCCTCACCGTCGCCGAGCACTTCCGCGAYCAG---GGCCAGGAC GTGCTGTTCTT >Brbul_atpD [org=Brevundimonas bullata] [strain=ATCC 4278] CCGATCAAGACCACGGGAATACCGTCGATCCACCGCGAGGCTCCGACCTT CGAAGAGCAgTCSACCTCGTCGGAAATCCTGGTCACGGGCATCAAGGTCA TCGACCTGATCTGCCCCTACACCAAGGGCGGCAAGACCGGCCTGTTCGGC GGCGCTGGCGTGGGCAAGACCGTGACCATGCAGGAACTGATCaACAACAT CGCCAAGGCTTACGGCGGTTATTCGGTTCTGGCCGGCGTGGGCGAGCGCA CCCGTGAAGGCaACGACcTGTATCACGAGATGATCGAGTCCAACgTGAAC GYGGACCCGGCCAAGAACAACGGCTCGACCGAaGGCTCCAAGTGCGCCCT GGTTTACGGCCAGATGAACGAGCCCCcCGGCGCCCGCGCCCGCGTCGCCC TGACCGGCCTGTCGATCGCTGAGTATTCCCGCGACGAAGAAGGCAAGGAC GTGCTGCTGTT >Memed_atpD [org=Mesorhizobium mediterraneum] [strain=USDA 3392] CCGACCAATGGCATCGAGATGCGCTCCATCCAACCACCGGCCCCGACCTA TGTCGAGCAGTCGACGGAAGCGCAGATCCTGGTCACCGGCATCAAGGTTC TCGACCTGCTTGCGCCTTATGCCCGCGGCGGCAAGATCGGCCTGTTCGGC GGCGCCGGCGTTGGCAAGACGGTGCTGATCCAGGAACTGATCAACAACGT CGCCAAGGCGCATGGCGGCTTCTCGGTGTTCGCCGGCGTCGGTGAGCGCA CCCGCGAAGGAAACGACCTCTACCATGAGTTCATCGAGTCCGGCGTCAAC ---------------AAGAAGGGCGGCGGCGAAGGCTCCAAGGCGGCGCT CGTCTATGGCCAGATGAACGAGCCGCCGGGCGCGCGCGCCCGCGTCGGTC TGACCGGTCTGACGGTCGCCGAATATTTCCGCGACCAG---GGCCAGGAC GTGCTGTTCTT >Metia_atpD [org=Mesorhizobium tianshanense] [strain=USDA 3592] CCGGTGGACGGCATNGAGATGCGATCCATTCACCAGCCGGCTCCGACATA TGTCGAGCAGTCGACGGAAGCGCAGATCCTGGTCACCGGCATCAAGGTTC TCGACCTGCTCGCGCCCTATGCCCGCGGCGGCAAGATCGGCCTNTTCGGC GGcGCCGGCGTCGGCAAGACcGTGCTGATCCAGGAACTGATCAACAACGT CGCCAAGGCGCATGGCGGCTACTCAGTGTTCGCCGGCGTCGGCGAGCGCA CCCGCGAAGGCAACGACCTCTATCACGAGTTCATCGAGTCCGGCGTCAAC ---------------AAGAAGGGCGGTGGCGAAGGCTCCAAGGCGGCGCT CGTCTATGGCCAGATGAACGAGCCGCCGGGCGCGCGCGCCCGCGTCGGCC TGACNGGCCTNACGGTGGCCGAATATTTCCGCGACCAG---GGCCAGGAC GTGCTGTTCTT >Melot_atpD [org=Mesorhizobium loti] [strain=USDA 3471] CCGGTCGACGCGATCGAAATGCGCTCCATCCACCAGCCGGCTCCGACCTA TGTCGAGCAGTCGACGGAAGCGCAGATCCTGATCACCGGCATCAAGGTGC TCGATCTGCTCGCACCCTACGCCAAGGGCGGCAAGATCGGCCTGTTCGGC GGCGCCGGCGTCGGCAAGACCGTGCTGATCCAGGAACTGATCAACAACAT CGCCAAGGCGCATGGCGGCTATTCGGTGTTCGCCGGCGTCGGCGAGCGCA CCCGCGAAGGCAACGATCTCTATCACGAGTTCATCGAATCCGGCGTCAAC ---------------AAGAAGGGCGGCGGCGAAGGCTCCAAGGCGGCCCT CGTCTATGGCCAGATGAACGAGCCGCCGGGCGCGCGCGCCCGCGTCGGCC TGACCGGCCTGACGGTTGCTGAATATTTCCGCGACCAG---GGCCAGGAC GTGCTGTTCTT >Mehua_atpD [org=Mesorhizobium huakuii] [strain=USDA 4779] CCGGTCGACGCGATCGAGATGCGCTCCATCCACCAGCCGGCTCCGACCTA TGTCGAGCAGTCGACCGAAGCGCAGATCCTGATCACCGGCATCAAGGTGC TCGACCTCTTGGCACCTTACGCCAAGGGCGGCAAGATCGGCCTGTTCGGC GGCGCCGGCGTCGGCAAGACCGTGCTGATCCAGGAACTGATCAACAACAT CGCCGAGGCGCACGGCGGCTATTCGGTGTTCGCCGGCGTCGGCGAGCGCA CCCGCGAGGGCAACGATCTCTATCACGAGTTCATCGAATCCGGCGTCAAC ---------------AAGAAGGGCGGCGGCGAAGGCTCCAAGGCGGCCCT CGTGTACGGCCAGATGAACGAACCGCCGGGCGCGCGCGCCCGCGTCGGCC TGACCGGCCTGACGGTCGCTGAATATTTCCGCGACCAG---GGCCAGGAC GTGCTGTTCTT >Mecic_atpD [org=Mesorhizobium ciceri] [strain=USDA 3383] CCGTCGAACGCGATCGAAATGCGCTCCATCCACCAGCCGGCTCCGACGTA TGTCGAGCAGTCGACGGAAGCACAGATCCTGATCACCGGCATCAAGGTGC TCGACCTCTTGGCTCCCTACGCCAAGGGCGGCAAGATCGGCCTGTTCGGC GGCGCCGGCGTCGGCAAGACCGTGCTGATCCAGGAACTGATCAACAACAT CGCCAAGGCGCATGGCGGCTATTCGGTGTTCGCCGGCGTCGGCGAGCGCA CCCGCGAAGGCAACGATCTCTATCACGAGTTCATCGAATCCGGCGTCAAC ---------------AAGAAGGGCGGCGGCGAAGGCTCCAAGGCCGCGCT CGTCTACGGCCAGATGAACGAGCCGCCGGGCGCGCGCGCCCGCGTCGGCC TGACTGGCCTGACGGTTGCGGAGTATTTCCGCGACCAG---GGCCAGGAC GTGTTGTTCTT >RhtrA_atpD [org=Rhizobium tropici A] [strain=USDA 9039] CCGCTGAACACTTCCAAGAAGCGCGCCATTCACCAGGATGCTCCGTCCTA CGTCGAGCAGTCCACGGAAGGCCAGATCCTCGTCACCGGCATCAAGGTYG TCGACCTGCTCGCTCCCTATGCAAAGGGCGGCAAGATcGGTCTGTTCGGC GGCGCAGGcGTCGGCAAGACCGTTCTCATCATGGAGCTGATCAAcAACGT CGCCAAGGCGCACGGTGGTTATTCGGTGTTCGCAGGCGTTGGTGAACGTA CCCGCGAAGGCAACGACCTTTACCACGAAATGATCGAATCGGGCGTCAAC ---------------AAGCATGGNGGCGGCGAAGGCTCCAAgGCCGCGCT CGTTTACGGCCAGATGAACGAACCGCCGGGCGCGCGCGCCCGCGTCGCTC TGACCGGTCTGACGGtTGCTGAAAACTTCCGCGATGAA---GGCCAGGAC GTTCTGTTCTT >RhtrB_atpD [org=Rhizobium tropici B] [strain=USDA 9030] CCGCTGAACACGTCGAAGAAGCGCGCCATCCACCAGGAAGCTCCGTCCTA CGTCGAGCAGTCCACGGAAGCGCAGATCCTCGTCACCGGCATCAAGGTCG TCGACCTTCTCGCTCCTTACGCAAAGGGCGGCAAGATCGGCCTGTTCGGC GGCGCCGGCGTCGGCAAGACCGTTCTCATCATGGAACTGATCAACAACGT CGCCAAGGCGCACGGTGGTTACTCGGTCTTCGCAGGCGTGGGTGAACGCA CCCGCGAAGGCAACGACCTCTACCACGAAATGATCGAATCGGGCGTCAAC ---------------AAGCATGGCGGCGACGAAGGCTCCAAGGCGGCACT CGTTTACGGCCAGATGAACGAACCGCCGGGCGCCCGCGCTCGCGTCGCTC TGACCGGTCTGACCGTTGCTGAAAACTTCCGTGATGAA---GGTCAGGAC GTTCTGTTCTT >Agrhi_atpD [org=Agrobacterium rhizogenes] [strain=NCPPB 2991] CCGNNGGTTACGTCGANGAAGCGCTCCATCCACCAGGAAGCTCCCNCCTA NGTCGAGCAGTCCACCGAAGGCCAGATCCTGGTCACCGGCATCAAGGTTG TCGACCTGCTCGCACCTTACGCAAAGGGCGGCAAGATCGGCCTGTTCGGC GGCGCCGGCGTCGGCAAGACCGTTCTGATCATGGAACTGATCAACAACGT CGCCAAGGCGCATGGTGGTTACTCGGTATTCGCAGGCGTGGGTGAACGTA CCCGCGAAGGCAACGACCTTTACCACGAAATGATCGAATCCGGCGTCAAC ---------------AAGCATGGCGGCGGCGAAGGCTCCAAGGCTGCGCT GGTTTACGGCCAGATGAACGAACCGCCGGGCGCCCGCGCTCGCGTCGCTC TGACCGGTCTGACGGTTGCTGAAAACTTCCGCGATGAA---GGCCAGGAC GTTCTGTTCTT >Sisah_atpD [org=Sinorhizobium sahelense] [strain=HAMBI 217] CCGGTCACCACTTCTGCCCGCCGCGCCATCCACCAGGACGCGCcGGCCTA TGTCGAGCAGTCGACGGAAGCGCAGATCCTCGTCACCGGCATCAAGGTCG TCGACCTGCTCGCGCCTTACGCCAAGGGCGGCAAGATCGGCCTCTTCGGC GGTGCAGGCGTCGGCAAGACCGTTCTGAtCATGGAACTGATCAACAACGT CGCCAAGGCGCACGGCGGTTACTCGGTCTTCGCAGGCGTCGGCGAACGCA CCCGCGAAGGCAACGACCTCTATCACGAAATGATCGAATCGGGCGTGAAC ---------------AAGCACGGCGGCGGCGAAGGCTCCAAGGCTGCGCT CGTTTACGGCCAGATGAACGAGCCGCCGGGTGCGCGCGCCCGCGTCGCGC TCACCGGTCTGACGGTCGCCGAGCACTTCCGTGACGAA---GGCCAGGAC GTTCTGTTCTT >Simel_atpD [org=Sinorhizobium meliloti] [strain=USDA 1002] CCGCTGAAGACTTCCGCCCGCCGCGCCATCCAACCAGAAGCGCCGGCTTA TGTGGACCAGTCGACGGAAGCGCAGATTCTCGTCACCGGCATCAAGGTCG TCGACCTGCTCGCTCCCTATGCGAAGGGCGGCAAGATCGGCCTCTTCGGC GGCGCGGGCGTCGGCAAGACCGTGCTGATCATGGAACTGATCAACAACGT CGCCAAGGCGCACGGCGGTTACTCCGTCTTCGCAGGCGTCGGTGAACGGA CCCGCGAAGGCAACGACCTCTATCACGAAATGATCGAGTCCGGCGTGAAC ---------------AAGCATGGCGGCGGCGAAGGTTCCAAGGCCGCGCT CGTCTACGGCCAGATGAACGAGCCGCCGGGCGCCCGCGCACGCGTCGCGC TGACCGGCCTGACGGTCGCCGAACAGTTCCGTGACGAA---GGCCAGGAC TTTCTSTTCTT >Simed_atpD [org=Sinorhizobium medicae] [strain=A321] CCGCTCAANACCTCCGCGCGCCGCGCGATCCACCAGGATGCGCCGGCCTA TGTCGACCAGTCGACGGAAGCGCAGATCCTCGTTACCGGCATCAAGGTTG TCGACCTGTTGGCTCCTTACGCCAAGGGCGGCAAGATCGGCCTCTTCGGC GGCGCAGGTGTGGGCAAGACCGTTCTGATCATGGAACTGATCAACAACGT CGCCAAGGCGCATGGCGGTTACTCCGTCTTCGCAGGTGTCGGTGAACGGA CCCGCGAAGGAAACGACCTGTACCACGAAATGATCGAATCCGGCGTGAAC ---------------AAGCACGGCGGCGGCGAAGGCTCCAAGGCTGCGCT CGTTTACGGTCAGATGAACGAACCGCCGGGCGCCCGTGCGCGCGTCGCGC TGACCGGCCTGACGGTCGCCGAACAGTTCCGCGACGAA---GGCCAGGAC GTTCTGTTCTT >Sifre_atpD [org=Sinorhizobium fredii] [strain=USDA 205] CCGCTCAAGACCTCGGCCCGCCGTGCGATCCACCAGGACGCTCCCTCCTA NGTCGAACAGTCGACGGAAGCGCAGATCCTCGTCACCGGCATCAAGGTCG TCGACCTGCTTGCGCCTTACGCAAAGGGCGGCAAGATCGGTCTCTTCGGT GGCGCGGGCGTCGGCAAGACCGTTCTGATCATGGAACTGATCAACAACGT CGCCAAGGCGCACGGTGGTTATTCGGTCTTCGCCGGTGTGGGTGAACGTA CCCGCGAAGGCAACGACCTTTATCACGAAATGATCGAATCGGGCGTGAAC ---------------AAGCACGGCGGCGGCGAAGGCTCCAAGGCCGCTCT CGTCTACGGCCAGATGAACGAACCGCCGGGCGCGCGTGCTCGCGTTGCTC TGACCGGCCTGACGGTTGCCGAACAGTTCCGTGACGAA---GGTCAGGAC GTTCTCTTCTT >Siter_atpD [org=Sinorhizobium terangae] [strain=HAMBI 220] CCGCTAGAAACCTCGGCACGCCGCGCGATCCACCAGGACGCACCGGCCTA TGTCGAGCAGTCGACGGAAGCACAGATCCTCGTCACCGGCATCAAGGTCG TCGACCTGCTCGCTCCCTATGCGAAGGGCGGCAAGATCGGCCTCTTCGGT GGTGCAGGCGTCGGCAAGACCGTTCTGATCATGGAACTGATCAACAACGT CGCCAAGGCGCACGGTGGTTACTCGGTCTTCGCAGGCGTCGGTGAGCGTA CCCGCGAAGGCAACGACCTCTATCACGAAATGATCGAATCGGGCGTGAAC ---------------AAGCACGGTGGCGGCGAAGGCTCCAAGGCTGCTCT CGTTTACGGCCAGATGAACGAACCGCCGGGCGCACGCGCTCGCGTCGCGC TCACCGGCCTGACGGTCGCCGAACAGTTCCGCGACGAA---GGCCAGGAC GTTCTCTTTTT >Rhetl_atpD [org=Rhizobium etli] [strain=USDA 9032] CCGCTGAACACCGCTCACAAACGCGCCATCCACCAGGACGCTCCTGCCTA TGTCGAGCAGTCTAcGGAAGCGCAGATCCTCGTCACCGGTATCAAGGTCG TCGACCTTCTCGCTCCTTACGCAAAGGGCGGCAAGATCGGCCTGTTCGGC GGCGCCGGCGTCGGCAAGACCGTTCTCATCATGGAACTGATCAACAATGT CGCCAAGGCGCATGGTGGTTATTCGGTCTTCGCAGGCGTGGGTGAGCGTA CCCGCGAAGGCAACGACCTTTACCACGAAATGATCGAATCGGGCGTCAAC ---------------AAGCATGGTGGCGGCGAAGGCTCCAAGGCTGCGCT TGTTTACGGCCAGATGAACGAACCGCCGGGCGCCCGCGCTCGCGTCGCTC TGACCGGCCTGACCGTCGCAGAACATTTCCGCGACCAG---GGCCAGGAC GTTCTGTTCTT >Rhleg_atpD [org=Rhizobium leguminosarum bv viciae] [strain=USDA 2370] CCGCTGGTTACCGCCCACAAGCGCTCCATCCACCAGGATGCGCCGACCTA TGTCGAGCAGTCGACGGAAGCGCAGATCCTCGTCACCGGCATCAAGGTCG TCGACCTTCTCGCCCCCTATGCACGCGGCGGCAAGATCGGCCtCTTCGGT GGCGCCGGCGTCGGCAAGACCGTTCTGATCATGGAACTGATCAaCAACGT CGCCAAGGCGCATGGTGGTTACTCGGTTTTTGCGGGCGTCGGTGAACGCA CCCGCGAAGGCAACGACCTTTACCATGAAATGATCGAATCGAACGTCAAC ---------------AAGCACGGTGGTGGCGAAGGCTCGAAGGCTGCGCT GGTTTACGGCCAGATGAACGAGCCGCCGGGTGCGCGCGCGCGCGTTGCTC TGACCGGCCTGACGGTCGCCGAACACTTCCGTGACCAG---GGCCAGGAC GTGTTGTTCTT >Rhgal_atpD [org=Rhizobium galegae] [strain=USDA 4128] CCGCTGGTCACCTCCGGCAAGCGCGCCATCCACCAGGAAGCGCCTTCCTA CGTCGATCAGTCGACCGAAGGCCAGATCCTGGTCACCGGCATCAAGGTCG TCGACCTGCTTGCGCCTTACGCAAAGGGCGGCAAGATCGGCCTCTTCGGC GGTGCAGGCGTCGGCAAGACGGTTCTCATCATGGAACTCATCAACAACGT CGCAAAGGCACACGGCGGTTATTCCGTGTTCGCAGGCGTCGGTGAGCGTA CCCGCGAAGGCAACGACCTTTACCACGAAATGATCGAATCGGGCGTCAAC ---------------AAGCATGGCGGCGGCGAAGGCTCCAAGGCCGCGCT CGTCTATGGCCAGATGAACGAACCGCCGGGCGCCCGCGCTCGCGTGGCTC TGACCGGTCTCACCATCGCTGAAGATTTCCGCGACAAG---GGCCAGGAC GTTCTGTTCTT >Agtum_atpD [org=Agrobacterium tumefaciens] [strain=NCPPB 2437] CCGATCGTTACGGCCAAGAAGCGCGCCATCCACCAGGATGCGCCGTCTTA CGTCGAGCAGTCGACCGAAGCACAGATCCTCGTCACCGGCATCAAGGTCG TCGACCTTCTGGCTCCTTACGCCAAGGGCGGCAAGATCGGCCTGTTCGGC GGCGCCGGCGTTGGCAAGACGGTTCTCATCATGGAACTGATCAACAACGT CGCCAAGGCGCACGGCGGTTACTCGGTATTCGCCGGCGTGGGTGAGCGTA CCCGCGAAGGTAACGACCTCTACCACGAAATGATCGAGTCCAACGTCAAC ---------------AAGCTTGGCGGCGGTGAAGGTTCCAAGGCTGCGCT CGTTTACGGCCAGATGAACGAACCGCCGGGTGCCCGCGCCCGCGTCGCTC TGACCGGTCTGACGATCGCTGAAAACTTCCGTGACGAA---GGCCAGGAC GTTCTGTTSTT >Mydim_atpD [org=Mycoplana dimorpha] [strain=ATCC 4279] CCGCTGGTCACGAAAGCGAAGCGCGCCATCCACCAGCACGCCCCGGACTA TGTCGAGCAGTCGACGGAAGCCCAGATCCTCGTCACCGGCATCAAGGTCG TCGACCTTCTGGCTCCTTACGCAAGGGACGGCAAGATCGGCCTGTTCGGC GGCGCCGGCGTTGGCAAGACCGTTCTGATCATGGAACTGATCAACAACGT CGCCAAGGCGCACGGCGGTTACTCGGTGTTTGCAGGCGTGGGTGAGCGTA CCCGCGAAGGCAACGACCTCTACCACGAAATGATCGAGTCCGGCGTTAAC ---------------AAGCTGGGCGGCGGCGAAGGCTCCAAGGCTGCCCT CGTCTACGGTCAGATGAACGAACCGCCGGGCGCCCGCGCACGCGTCGCTC TCACCGGTCTGACGATCGCCGAGGACTTCCGCGACAAG---GGCCAGGAC GTTCTGTTCTT >Myram_atpD [org=Mycoplana ramosa] [strain=ATCC 49678] CCGCTGAACACCAAGGCGAAGCGCGCCATCCACCAGGACGCTCCGGCCTA TGTCGAGCAGTCGACGGAAGCCCAGATCCTCGTCACGGGCATCAAGGTCG TCGACCTGCTGGCGCCGTACGCCAAGGGCGGCAAGATCGGCCTGTTCGGC GGCGCCGGCGTTGGCAAGACCGTTCTGATCATGGAACTGATCAACAACGT CGCCAAGGCGCACGGCGGTTACTCGGTGTTCGCCGGTGTGGGTGAGCGTA CCCGCGAGGGCAACGACCTCTACCACGAAATGATCGAGTCCGGCGTTAAC ---------------AAGATGGGTGGCGGTGAAGGCTCCAAGGCCGCCCT CGTCTATGGCCAGATGAACGAGCCGCCGGGCGCCCGCGCCCGCGTCGCCC TGACCGGTCTGACGATCGCCGAAGACTTCCGCGACAAG---GGTCAGGAC GTTCTGTTCTT >Azcau_recA [org=Azorhizobium caulinodans] [strain=USDA 4892] -------------------------------------------------- ---------GCTCGGGCAAAAGCGGCAGGTGATGGAGGTCGAAACCATCT CCTCGGGCTCGCTCGGCCTCGATATCGCGCTCGGCATCGGCGGCCTGCCC AAGGGCCGCATCGTCGAGATTTACGGTCCCGAATCCTCGGGCAAGACCAC GCTGGCGCTGCATACCATCGCCGAGGCGCAGAAGAAGGGCGGCACCTGCG CCTTCATCGACGCCGAGCATGCGCTCGATCCGATCTATGCCCGCAAGCTG GGCGTCAATCTCGACGACCTGCTGATCTCGCAGCCCGACGCTGGCGAGCA GGCGCTGGAGATCGCTGACACGCTGGTGCGCTCCGGCGCCATCGACGTGC TGGTGGTCGATTCGGTGGCCGCCCTCACGCCGCGTGCCGAACTCGACGGC GAGATGGGCGACAACCAGCCCGGCATGCAGGCCCGCCTCATGAGCCAGGC ---------------------------------- >Brbul_recA [org=Brevundimonas bullata] [strain=ATCC 4278] -------------------------------------------------- ---------GCTTGGNNGCAAGGAGGTTGTTGTCGAGNNCGAAACGGGNT TCACAGGGTTNCTTGGCCTGGACATAGCGCTCGGAATCGGCGGTTTACCG CGCGGCCGCGTCATCGAGGTGTTCGGCCCTGAATCCTCGGGCAAGACCAC CCTGGCCCTGCACACGGTGGCCGAAATCCAGAAAGCCGGCGGCGTCGCCG CCTTCGTCGACGCCGAACACGCTCTGGATCCCGGCTATGCCCAGAAGCTG GGCGTCAACCTGGACAACCTGCTGATGTCGCAGCCTGACACGGGCGAACA GGCGCTGGAAATCGTCGACACCCTGGTGCGCTCGGGCGCCGTGGACATCG TGGTGGTCGACTCGGTCGCAGCCCTGACGCCGCGCGCCGAAATCGAAGGC GAAATGGGCGACAGCCTGCCGGGCCTGCAAGCCCGTCTGATGAGCCAGGC ---------------------------------- >Phmyr_recA [org=Phyllobacterium myrsinacearum] [strain=ATCC 43590] -CGCTGGATGCGGCATTGTCACAGATCGAGAGAGCCTTTGGTAAGGGTTC GATCATGCGGCTTGAGACGAATGAGCAGGTGGTGGAAATTGAGACGGTGT CGACCGGCTCGCTTTCCCTGGATATAGCCCTCGGCGTCGGCGGTCTGCCG AAAGGCCGTATTGTCGAGATTTACGGGCCGGAAAGCTCCGGTAAGACAAC CCTGGCGCTGCATACGATTGCCGAAGCCCAGAAGAAGGGCGGCATCTGCG CCTTTGTCGACGCCGAGCATGCGCTGGACCCGGTCTATGCCCGCAAGCTG GGCGTGGATCTGGAGAACCTTCTGATCTCGCAGCCCGATACCGGCGAACA GGCGCTGGAGATCACCGATACGCTGGTCCGGTCCGGTGCGATCGATGTTC TGGTGGTCGATTCCGTTGCTGCCTTGACCCCGCGTGCGGAAATCGAAGGC GAGATGGGCGATTCTCTCCCCGGCCTGCAGGCCCGCTTGATGAGCCAGGC GCTGCGCAAGCTGACCGCATCCATCTCCCGCTCC >Phrub_recA [org=Phyllobacterium rubiacearum] [strain=ATCC 43591] -CGCTGGATGCGGCATTGTCACAGATCGAGAGAGCCTTTGGTAAGGGTTC GATCATGCGGCTTGAGACGAATGAGCAGGTGGTGGAAATTGAGACGGTGT CGACCGGCTCGCTTTCCCTGGATATAGCCCTCGGCGTCGGCGGTCTGCCG AAAGGCCGTATTGTCGAGATTTACGGGCCGGAAAGCTCCGGTAAGACAAC CCTGGCGCTGCATACGATTGCCGAAGCCCAGAAGAAGGGCGGCATCTGCG CCTTTGTCGACGCCGAGCATGCGCTGGACCCGGTCTATGCCCGCAAGCTG GGCGTGGATCTGGAGAACCTTCTGATCTCGCAGCCCGATACCGGCGAACA GGCGCTGGAGATCACCGATACGCTGGTCCGGTCCGGTGCGATCGATGTTC TGGTGGTCGATTCCGTTGCTGCCTTGACCCCGCGTGCGGAAATCGAAGGT GAGATGGGCGATTCTCTCCCCGGCCTGCAGGCCCGCTTGATGAGCCAGGC GTTGCGCAAGCTGACCGCATCC------------ >Mecic_recA [org=Mesorhizobium ciceri] [strain=USDA 3383] -CTCTGGATGCGGCGCTGTCGCAGATCGAGCGGGCTTTCGGCAAGGGCTC GATCATGCGGCTCGGCGCCAACGAGCAGGTCGTCGAGATCGAAACGGTGC CGACCGGCTCGCTTGGCCTCGACATCGCGCTTGGCGTCGGTGGCCTGCCG CGCGGCCGCATCATCGAGATCTACGGGCCGGAAAGCTCGGGCAAGACGAC GCTGGCCCTGCACACCGTGGCCGAAGCCCAGAAGAAGGGCGGCATCTGCG CCTTCGTCGATGCCGAGCACGCGCTTGACCCGGTCTATGCCCGCAAGCTT GGCGTCGATCTCGAAAACCTGCTGATTTCGCAGCCCGACACCGGTGAGCA GGCGCTGGAAATCTGCGACACGCTGGTGCGCTCCGGCGCCATCGACGTGC TGGTGGTCGATTCGGTCGCGGCGCTGACGCCACGTGCCGAAATCGAAGGC GAGATGGGTGATTCGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGC GCTGCGCAAGCTGACCGCCTCGATCTCGCGCTCC >Metia_recA [org=Mesorhizobium tianshanense] [strain=USDA 3592] -CTCTGGATGCGGCGCTGTCGCAAATCGAGCGTGCTTTCGGCAAGGGCTC GATCATGCGGCTCGGCGCAAACGAGCAGGTCGTCGAGATCGAAACGGTGC CGACCGGTTCGCTTGGCCTCGACATCGCGCTTGGCGTCGGCGGCCTGCCG CGCGGCCGCATCGTCGAGATCTACGGGCCTGAAAGCTCGGGCAAGACGAC GCTGGCGCTGCACACGGTGGCCGAAGCTCAGAAGAAGGGCGGCATCTGCG CCTTCGTCGATGCCGAGCACGCGCTCGACCCGGTCTATGCCCGCAAGCTC GGCGTCGATCTCGAAAACCTCCTGATCTCGCAGCCCGATACCGGCGAGCA GGCGCTGGAGATCTGCGACACGCTGGTGCGCTCCGGCGCCATCGACGTGC TGGTGGTCGATTCGGTCGCGGCGCTGACGCCGCGTGCCGAAATCGAGGGC GAAATGGGTGATTCGCTGCCTGGCCTGCAGGCCCGCCTGATGAGCCAGGC GCTGCGCAAACTGACCGCCTCGATCTCGCGCTCC >Memed_recA [org=Mesorhizobium mediterraneum] [strain=USDA 3392] --TCTGGATGCGGCGCTGTCGCAAATCGAGCGTGCTTTCGGCAAGGGCTC GATCATGCGGCTCGGCGCAAACGAGCAGGTCGTCGAGATCGAAACGGTGC CGACCGGCTCGCTTGGCCTCGACATCGCGCTTGGCGTCGGCGGTCTGCCG CGCGGCCGCATCATCGAGATCTACGGGCCGGAAAGCTCGGGCAAGACGAC GCTGGCCCTGCACACGGTGGCCGAGGCCCAGAAGAAGGGCGGCATCTGCG CCTTCGTCGATGCTGAGCATGCGCTCGATCCGGTCTATGCCCGCAAGCTC GGCGTCGATCTCGAGAACCTGCTGATTTCGCAGCCTGATACCGGTGAGCA GGCGCTGGAGATCTGCGACACGCTGGTGCGTTCCGGCGCCATCGACGTGC TGGTGGTCGATTCGGTCGCGGCGCTGACGCCGCGCGCCGAAATTGAGGGC GAGATGGGTGATTCGCTGCCGGGCCTGCAGGCCCGCCTGATGAGCCAGGC GCTGCGCAAGCTGACCGCCTCGATCTCGCGCTCC >Mehua_recA [org=Mesorhizobium huakuii] [strain=USDA 4779] -CTCTGGATGCGGCGCTGTCGCAAATCGAGCGGGCTTTCGGCAAGGGCTC GATCATGCGGCTCGGCGCGAACGAGCAGGTCGTCGAGATCGAAACGGTGC CGACTGGCTCGCTCGGCCTCGACATCGCGCTTGGCGTTGGTGGCCTGCCG CGCGGCCGCATCATCGAGATCTACGGACCGGAAAGCTCGGGCAAGACGAC GCTGGCGCTGCACACGGTGGCCGAAGCCCAGAAGAAAGGCGGCATCTGCG CCTTCGTCGATGCGGAGCACGCGCTCGACCCGGTCTATGCCCGCAAGCTC GGCGTCGACCTTGAAAACCTGCTGATTTCGCAGCCCGACACCGGTGAGCA GGCGCTGGAGATCTGCGACACGCTGGTACGTTCCGGCGCCATCGACGTGC TGGTGGTCGATTCGGTCGCGGCACTGACGCCGCGCGCCGAAATCGAAGGC GAGATGGGCGATTCGCTGCCGGGCCTGCAGGCTCGACTGATGAGCCAGGC GCTGCGCAAGCTGACCGCTTCGATCTCGCGCTCC >Melot_recA [org=Mesorhizobium loti] [strain=USDA 3471] -CTCTGGATGCGGCGCTGTCGCAAATCGAGCGGGCTTTCGGCAAGGGCTC GATCATGCGGCTCGGCGCGAACGAGCAGGTCGTCGAGATCGAAACGGTGC CGACCGGTTCGCTCGGCCTCGATATCGCGCTCGGCGTCGGCGGCCTGCCG CGCGGCCGCATCATCGAGATCTACGGCCCGGAAAGCTCGGGCAAGACGAC GCTGGCGCTGCACACGGTGGCCGAAGCCCAGAAGAAGGGCGGCATCTGCG CCTTCGTCGATGCCGAACACGCGCTCGATCCGGTCTATGCCCGCAAGCTT GGCGTTGACCTTGAAAACCTCCTGATCTCTCAGCCCGACACCGGCGAGCA GGCGCTGGAAATCTGCGACACGCTGGTGCGTTCGGGCGCCATCGACGTGC TGGTGGTCGATTCGGTCGCGGCGCTGACGCCACGCGCCGAAATCGAGGGC GAGATGGGCGATTCGCTGCCCGGTCTTCAAGCGCGTTTGATGAGCCAGGC GCTGCGCAAGCTGACCGCCTCGATCTCGCGCTCC >RhtrA_recA [org=Rhizobium tropici A] [strain=USDA 9039] -CACTTGAAGCGGCACTCTCTCAAATTGAGCGGTCGTTCGGCAAGGGCTC GATCATGAAGCTTGGCTCGAACGAGAACGTGGTCGAAATCGAAACAGTTT CCACCGGCTCTCTGAGCCTCGATATCGCGCTCGGCATCGGCGGTTTGCCG AAGGGGCGCATCATCGAGATCTACGGACCGGAAAGCTCGGGTAAGACGAC GCTGGCGTTGCAGACCATTGCAGAAGCCCAGAAGAAGGGCGGCATCTGCG CCTTCGTCGACGCCGAACATGCGCTCGATCCGGTCTATGCCCGCAAGCTC GGCGTCGACCTGCAGAACCTTCTGATTTCGCAGCCGGATACCGGTGAACA GGCGCTTGAAATCACCGATACACTGGTACGCTCCGGCGCCGTCGACGTTC TCGTCGTTGACTCCGTTGCTGCGCTGACGCCGCGCGCCGAAATCGAAGGC GAAATGGGCGACAGCCTGCCGGGCCTGCAGGCGCGCCTGATGAGCCAGGC GCTACGCAAGCTCACCGCTTCGATCTCGAAGTCC >RhtrB_recA [org=Rhizobium tropici B] [strain=USDA 9030] -CACTTGAAGCGGCACTCTCTCAAATTGAGCGGTCGTTCGGCAAGGGCTC GATCATGAAGCTCGGCTCCAACGAGAACGTGGTCGAAATCGAAACGGTTT CCACCGGCTCTCTGAGCCTCGATATCGCTCTCGGCATTGGCGGCTTGCCG AAGGGGCGGATCATCGAAATCTACGGGCCGGAAAGCTCGGGTAAGACGAC GCTGGCCCTGCAGACCATTGCAGAGGCTCAGAAGAAGGGTGGGATCTGCG CCTTCGTGGACGCGGAACATGCGCTCGATCCGGTCTATGCCCGCAAGCTC GGCGTCGACCTGCAGAACCTGTTGATCTCGCAGCCTGATACCGGCGAACA GGCGCTTGAAATCACCGATACACTGGTGCGCTCCGGAGCGATCGACGTCC TCGTGGTCGACTCCGTTGCGGCTCTGACGCCGCGCGCCGAAATCGAAGGC GAAATGGGCGACAGCCTGCCGGGCCTGCAGGCCCGCCTGATGAGCCAGGC GCTGCGCAAGCTCACGGCTTCCATCTCGAAGTCC >Agrhi_recA [org=Agrobacterium rhizogenes] [strain=NCPPB 2991] -CACTTGAAGCGGCACTCTCTCAAATTGAGCGGTCGTTCGGCAAGGGCTC GATCATGAAGCTCGGCTCTAACGAGAACGTGGTCGAAATCGAAACAGTTT CCACCGGCTCCCTGAGCCTCGATATCGCGCTCGGCATTGGCGGCTTGCCG AAGGGACGCATTGTCGAGATCTACGGGCCGGAAAGCTCCGGTAAGACGAC ACTGGCACTGCAGACGATTGCTGAGGCACAGAAGAAGGGTGGCATCTGCG CCTTTGTTGATGCCGAACACGCGCTCGACCCGGTCTATGCCCGCAAGCTC GGCGTCGACCTGCAGAACCTTTTGATTTCGCAGCCTGACACCGGCGAACA GGCGCTTGAAATCACCGACACGCTGGTGCGCTCCGGCGCCATCGACGTTC TCGTCGTCGACTCCGTTGCCGCGCTGACGCCGCGCGCCGAAATCGAAGGC GAGATGGGCGACAGCCTGCCGGGTCTGCAGGCCCGCCTGATGAGCCAGGC GCTGCGCAAGCTCACCGCTTCGATCTCGAAGTCC >Rhetl_recA [org=Rhizobium etli] [strain=USDA 9032] -CGCTCGAAGCGGCACTCTCACAGATAGAGCGGTCGTTCGGCAAGGGCTC GATCATGAAACTCGGTTCCAACGAGAACGTTGTCGAGATCGAGACGGTTT CGACGGGCTCGCTTGGTCTCGATATCGCGCTCGGCATTGGCGGCCTGCCG AAGGGCCGTATCATTGAAATCTATGGGCCGGAAAGCTCGGGCAAAACAAC GCTTGCGCTGCAGACCATTGCGGAATCGCAGAAGAAGGGGGGTATCTGCG CCTTCGTCGATGCCGAACACGCGCTCGATCCTGTCTATGCCCGTAAGCTT GGCGTCGATCTGCAGAACCTCCTGATCTCGCAGCCAGACACCGGCGAGCA GGCGCTCGAAATCACCGACACGCTGGTGCGCTCCGGCGCCGTCGACGTTC TCGTCGTCGACTCGGTCGCCGCGCTGACGCCGCGCGCCGAAATCGAAGGC GAGATGGGCGACAGCCTGCCGGGTATGCAGGCCCGCCTGATGAGCCAGGC GCTGCGCAAGCTGACCGCTTCGATCTCCAAGTCG >Rhleg_recA [org=Rhizobium leguminosarum bv viciae] [strain=USDA 2370] -CGCTTGAAGCGGCACTCTCACAGATAGAGCGGTCGTTCGGCAAGGGCTC GATCATGAAACTCGGCTCCAACGAGAATGTTGTCGAGATCGAGACGATCT CGACCGGCTCGCTTGGCCTCGATATTGCACTCGGCGTTGGTGGCCTGCCG AGGGGCCGCATCATCGAGATCTACGGGCCGGAAAGCTCCGGTAAGACGAC GCTTGCACTGCAGACGATTGCCGAAGCGCAGAAGAAGGGCGGCATCTGCG CCTTCGTCGATGCCGAACATGCGCTCGATCCCGTCTATGCCCGCAAGCTT GGCGTCGACCTGCAGAACCTTCTGATCTCGCAGCCCGATACCGGCGAGCA GGCGCTCGAAATCACCGATACGCTGGTGCGCTCCGGCGCCGTTGACGTTC TCGTCGTCGACTCGGTCGCCGCACTGACGCCGCGCGCCGAAATCGAAGGC GAAATGGGCGACAGCCTTCCCGGCCTGCAGGCACGACTGATGAGCCAGGC GCTGCGCAAGCTCACCGCTTCGATCTCCAAATCG >Agtum_recA [org=Agrobacterium tumefaciens] [strain=NCPPB 2437] -CACTGGAAGCGGCGCTCTCCCAGATCGAACGGTCGTTCGGCAAGGGATC GATTATGAAGCTCGGTTCCAATGAAAATGTGGTTGAGGTGGAGACCGTTT CGACGGGTTCTCTCAGCCTGGATATCGCGCTCGGCATCGGCGGTTTGCCG AAGGGGCGCATCGTTGAAATTTATGGCCCGGAAAGCTCGGGTAAGACGAC GCTGGCGCTGCAGACGATTGCGGAAGCCCAAAAGAAGGGCGGCATCTGCG CCTTCGTGGATGCCGAGCACGCGCTCGATCCGGTCTATGCCCGCAAGCTT GGCGTGGATTTGCAGGGCCTTCTGATCTCGCAGCCGGATACGGGCGAGCA GGCACTTGAGATCACCGATACGCTGGTGCGTTCCGGTGCGGTTGATGTCC TGGTGGTCGACTCCGTTGCGGCGCTGACGCCGCGGGCGGAAATCGAAGGC GAGATGGGTGACAGCCTGCCGGGTCTTCAGGCCCGCCTGATGAGCCAGGC GCTGCGCAAGCTGACC------------------ >Rhgal_recA [org=Rhizobium galegae] [strain=USDA 4128] -CGCTGGAAGCGGCATTGTCGCAGATCGAACGATCCTTCGGTAAGGGATC GATCATGAAGCTCGGTTCGAACGACAACATTGTCGAGATCGAGACGGTTT CGACCGGCTCTCTCAGCCTCGATATCGCGCTTGGCATCGGCGGCCTGCCG AAGGGCCGTATCTTCGAAATCTACGGTCCGGAAAGCTCGGGCAAGACGAC GCTTGCGCTGCAGACGATTGCCGAAGCTCAGAAGAAGGGTGGCATCTGCG CCTTCGTCGACGCCGAACACGCGCTTGATCCGGTCTATGCTCGCAAGCTT GGCGTCGATCTCCAGAACCTTCTGATCTCGCAGCCGGATACCGGCGAGCA GGCGCTCGAAATCACCGACACGCTGGTCCGTTCCGGTGCCGTCGATGTCC TCGTTATCGACTCGGTTGCGGCATTGACCCCGCGCGCCGAAATTGAGGGC GAGATGGGCGACAGCCTGCCGGGCCTTCAGGCGCGCCTGATGAGCCAGGC GCTGCGCAAGCTCACCGCTTCGATTTCCAAGTCG >Sifre_recA [org=Sinorhizobium fredii] [strain=USDA 205] -CACTTGAAGCGGCTCTTTCCCAGATCGAACGTTCGTTCGGCAAGGGATC GATCATGAAGCTCGGATCGAAGGACAGCGTCATCGAGATCGAAACCGTCT CGACCGGATCGCTCGGCCTCGATATCGCGCTCGGCATCGGCGGCCTGCCA AAGGGGCGCATTGTTGAGATTTACGGGCCGGAAAGCTCGGGCAAGACGAC GCTGGCCCTGCAGACCATTGCCGAGGCGCAAAAGAAAGGCGGAATCTGCG GCTTTGTCGACGCCGAACATGCGCTCGATCCGATTTATGCGCGCAAACTG GGCGTCGACCTCGAAAACCTGCTGATCTCGCAACCCGATACGGGCGAGCA GGCGCTCGAAATCACCGACACCCTGGTTCGCTCCGGCGCAATCGATGTGC TCGTCGTCGACTCGGTTGCAGCACTCGTGCCGCGTGCCGAAATCGAAGGT GAGATGGGCGACAGCCTGCCGGGCATGCAAGCCCGCCTGATGAGTCAGGC GCTGCGCAAGCTGACGGCATCGATCTCCAAGTCC >Sisah_recA [org=Sinorhizobium sahelense] [strain=HAMBI 217] -CACTTGAAGCGGCTCTTTCCCAGATCGAACGTTCGTTCGGCAAGGGATC GATCATGAAGCTCGGATCGAAGGACAGCGTCGTCGAGATCGAAACCGTCT CTACCGGCTCGCTCGGCCTCGACATCGCGCTCGGAATCGGCGGCTTGCCG AAGGGCCGCATCATCGAAATCTACGGTCCGGAAAGCTCGGGCAAGACGAC GCTGGCGCTGCAGACCGTTGCCGAGGCGCAGAAGAAGGGCGGCATCTGCG CTTTCGTCGACGCCGAGCATGCGCTCGATCCGGTCTATGCGCGCAAGCTC GGGGTCGACCTCGAGAACCTGCTGATCTCGCAGCCCGATACCGGTGAGCA GGCGCTGGAAATCACCGACACGCTGGTCCGCTCCGGCGCGATCGACGTGC TCGTCGTCGATTCGGTCGCCGCGCTCGTGCCGCGCGCCGAGATCGAAGGC GAGATGGGCGACAGCCTGCCGGGCATGCAGGCGCGGTTGATGAGCCAGGC GCTGCGCAAGCTGACGGCCTCGATCTCCAAGTCC >Simed_recA [org=Sinorhizobium medicae] [strain=A321] -CACTTGAAGCGGCTCTTTCTCAGATCGAACGTGCGTTCGGTAAGGGATC GATCATGAAGCTCGGAGCAAAAGACAGTGTGGTCGAGATCGAAACCGTAT CCACCGGTTCGCTCGGCCTCGATATTGCGCTCGGCATAGGCGGCCTGCCG AAGGGCCGTATCGTCGAAATCTACGGTCCGGAAAGCTCGGGCAAGACCAC GCTGGCGCTTCAGACCATTGCCGAGGCACAAAAGAAGGGCGGCATCTGCG GCTTCGTCGATGCCGAGCATGCCCTCGACCCGATCTATGCGCGCAAACTC GGCGTCGATCTCGAGAATCTCCTGATTTCACAGCCTGATACCGGCGAGCA GGCGCTGGAGATCACCGATACGCTGGTCCGCTCCGGCGCGATCGATGTTC TTGTCGTCGACTCGGTTGCGGCACTCGTGCCGCGTGCGGAAATCGAGGGC GAGATGGGCGACAGTCTGCCGGGCATGCAGGCGCGTCTCATGAGCCAGGC GCTGCGCAAGCTGACGGCCTCGATCTCCAAGTCA >Simel_recA [org=Sinorhizobium meliloti] [strain=USDA 1002] -CACTTGAAGCGGCTCTTTCCCAGATCGAACGTTCGTTCGGCAAGGGATC GATCATGAAGCTCGGAGCGAAGGACAGCGTAGTTGAGATCGAAACCGTCT CCACCGGTTCGCTCGGCCTCGATATCGCGCTCGGCATCGGCGGCCTGCCG AAGGGCCGTATCATCGAGATCTATGGTCCGGAAAGCTCGGGCAAGACGAC GCTGGCGCTGCAGACCATTGCCGAGGCACAGAAGAAGGGCGGCATCTGCG GCTTCGTCGATGCCGAGCATGCACTCGATCCGGTCTATGCACGAAAGCTC GGGGTCGATCTCGAAAATCTCCTGATTTCGCAGCCTGATACGGGCGAGCA GGCGCTGGAAATCACCGATACGCTGGTCCGTTCGGGTGCGATCGACATTC TCGTCATCGATTCGGTGGCCGCACTCGTGCCGCGCGCCGAAATCGAGGGC GAGATGGGCGACAGTCTGCCGGGCATGCAGGCGCGCCTCATGAGCCAGGC GCTGCGCAAGCTTACGGCATCGATCTCCAAGTCG >Siter_recA [org=Sinorhizobium terangae] [strain=HAMBI 220] -CACTTGAAGCGGCTCTCTCCCAGATCGAACGGTCGTTCGGCAAGGGATC GATCATGAAGCTCGGTTCGAAGGACAGCGTAATCGAGATCGAAACTGTTT CGACCGGCTCGCTTGGCCTCGATATCGCGCTCGGCATCGGCGGTCTGCCG AAGGGGCGCATCATTGAAATCTACGGCCCGGAAAGCTCGGGCAAGACGAC GCTGGAGCTGCAGACCATCGCCGAGGCGCAGAACAAGGGTGGCATTTGCG GCTTCGTTGACGCCGAACATGCGCTCGATCCGGTCTATGCGCGTAAGCTG GGCGTCGATCTCGAAAACCTCTTGATCTCGCAGCCGGACACCGGCGAACA GGCGCTGGAAATCACCGACACGCTGGTCCGTTCCGGCGCGATCGACGTCC TCGTTGTCGATTCGGTTGCAGCTCTCGTGCCGCGCGCAGAAATCGAAGGC GAAATGGGCGACAGTTTGCCGGGCATGCAAGCCCGCCTGATGAGCCAGGC ACTGCGCAAGCTCACCGCGTCGATCTCCAAGTCC >Myram_recA [org=Mycoplana ramosa] [strain=ATCC 49678] --------------ATTTTCTCAGATCAGACGGTCGTTCGGCAAGGGCTC GATCATGAAGCTCGGCTCGAAGGACAGCGTCGTCGAGATCGAAACCATCC CGACGGGCTCGCTCGGTCTCGACATCGCGCTCGGGATCGGCGGGCTGCCC AAGGGGCTAATCATCGAGATTTACGGGCCGGAAAGCTCGGGCAAGACGAC GCTGGCGCTGCAGACAATCGCGGAAGCCCAGAAGAAGGGCGGCATCTGCG GCTTCGTCGATGCCGAGCACGCGCTCGATCCCGTCTATGCCCGCAAGCTC GGCGTCGATCTGGAAAACCTCCTGATCTCGCAKCCGGACAATGGCGAGCA GGCGCTCGAGATCACCGACGCGCTGGTTCGCTCCGGTGCGATCGACGTGC TCGTGATCGACTCGGTCGCCGCACTCACGCCGCGCGCCGAAATCGAGGGC GAGATGGGCGACAGCCTGCCGGGTCTGCAGGCCCGCCTGATGAGCCAGGC ACTGCGCAAGCTGACGGC---------------- >Mydim_recA [org=Mycoplana dimorpha] [strain=ATCC 4279] -CACTCGAAGCGGCACTTTCTCAGATCGAGAGGTCCTTCGGCAAGGGCTC GATCATGAAGCTCGGCGCGAAGGACAGTGTCGTCGAGATCGAAACCATTC CGACCGGCTCGCTCGGTCTCGACATTGCGCTCGGGATCGGCGGTTTGCCG AAGGGACGAATCATCGAGATCTACGGGCCGGAAAGCTCGGGCAAGACGAC GCTGGCGCTGCAGACGATCGCCGAGGCGCAGAAGAAGGGCGGCATCTGCG GCTTCGTCGATGCCGAGCACGCGCTCGATCCCGTCTATGCCCGCAAGCTC GGCGTCGACCTTGAGAACCTTTTGATATCGCAGCCGGACAACGGTGAGCA GGCGCTGGAGATCACCGATGCGCTGGTGCGCTCCGGTGCGATCGACGTGC TGGTGATCGACTCGGTCGCAGCGCTCACGCCGCGCGCCGAAATCGAGGGC GAGATGGGCGACAGCCTGCCGGGCCTGCAGGCCCGCCTGATGAGCCAGGC GCTGCGCAAGCTGACGGCTTCGATCTCTCGCTC-
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| HOME | HELP | FEEDBACK | SUBSCRIPTIONS | ARCHIVE | SEARCH | TABLE OF CONTENTS |
| INT J SYST EVOL MICROBIOL | MICROBIOLOGY | J GEN VIROL |
| J MED MICROBIOL | ALL SGM JOURNALS | |
