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Int J Syst Evol Microbiol 59 (2009), 1504-1507; DOI  10.1099/ijs.0.003723-0
© 2009 International Union of Microbiological Societies

Saccharothrix violaceirubra sp. nov., isolated from soil and plant litter

Misa Otoguro1, Tomohiko Tamura1, Ken-ichiro Suzuki1 and Masayuki Hayakawa2

1 NITE Biological Resource Center (NBRC), Department of Biotechnology, National Institute of Technology and Evaluation (NITE), 2-5-8 Kazusakamatari, Kisarazu, Chiba 292-0818, Japan
2 Division of Applied Biological Sciences, Interdisciplinary Graduate School of Medicine and Engineering, University of Yamanashi, 4-3-11 Takeda, Kofu, Yamanashi 400-8511, Japan

Correspondence
Misa Otoguro
otoguro-misa{at}nite.go.jp

Two strains of nocardioform actinomycetes, isolated from soil and plant litter in Yamanashi prefecture, Japan, showed substrate mycelium with purple to dark-red colours. 16S rRNA gene sequence analysis indicated that the organisms belonged to the family Actinosynnemataceae and were related closely to Saccharothrix strains (96.7–98.0 % sequence similarity). The isolates contained MK-9(H4) as the predominant menaquinone, meso-diaminopimelic acid, galactose as the diagnostic whole-cell sugar and phosphatidylethanolamine as the predominant polar lipid. Based on a combination of cultural, physiological and chemotaxonomic properties, in addition to the phylogenetic analysis and DNA–DNA hybridization data, we propose a novel species, Saccharothrix violaceirubra sp. nov., for these strains, with the type strain YU 692-1T (=NBRC 102064T =KCTC 19326T).

Abbreviations: meso-A2pm, meso-diaminopimelic acid; SEM, scanning electron microscopy

The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of Saccharothrix violaceirubra YU 692-1T is AB284261.

A scanning electron micrograph of the synnemata of strain YU 692-1T is available with the online version of this paper.






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