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1 Laboratory of Microbiology, Ghent University, K.L. Ledeganckstraat 35, Ghent 9000, Belgium
2 BCCMTM/LMG Bacteria Collection, Ghent University, K.L. Ledeganckstraat 35, Ghent 9000, Belgium
Correspondence
Sabri M. Naser
Sabri.Naser{at}Ugent.be
The applicability of a multilocus sequence analysis (MLSA)-based identification system for lactobacilli was evaluated. Two housekeeping genes that code for the phenylalanyl-tRNA synthase
-subunit (pheS) and RNA polymerase
-subunit (rpoA) were sequenced and analysed for members of the Lactobacillus salivarius species group. The type strains of Lactobacillus acidipiscis and Lactobacillus cypricasei were investigated further using a third gene that encodes the
-subunit of ATP synthase (atpA). The MLSA data revealed close relatedness between L. acidipiscis and L. cypricasei, with 99.8100 % pheS, rpoA and atpA gene sequence similarities. Comparison of the 16S rRNA gene sequences of the type strains of the two species confirmed the close relatedness (99.8 % gene sequence similarity) between the two taxa. Similar phenotypes and high DNADNA binding values in the range of 84 to 97.5 % confirmed that L. acidipiscis and L. cypricasei are synonymous species. On the basis of the present study, it is proposed that Lactobacillus cypricasei is a later heterotypic synonym of Lactobacillus acidipiscis.
The GenBank/EMBL/DDBJ accession numbers for the partial pheS gene sequences for strains LMG 19820T, LMG 21592T, LMG 23135, CCUG 42959, CCUG 42960, CCUG 42962, LMG 9843T, LMG 14189T, LMG 22087T, LMG 21748T, LMG 9186T, LMG 10753T, LMG 10756T, LMG 21593T, LMG 9477T, LMG 6899T and LMG 6903T are AM087762, AM087687, AM168426AM168429, AM087679, AM087760, AM087717, AM087740, AM087734, AM087737, AM087756, AM087708, AM087721, AM087746 and AM168425. Those for the rpoA partial gene sequences for strains LMG 19820T, LMG 21592T, LMG 23135, CCUG 42959, CCUG 42960, LMG 9186T and LMG 14189T are AM087849, AM087784, AM168431AM168433, AM087831 and AM087801, respectively. Those for the atpA partial gene sequences for strains LMG 19820T and LMG 21592T are AM168424AM168423, respectively.
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