Int J Syst Evol Microbiol 55 (2005), 569-575; DOI 10.1099/ijs.0.63292-0
© 2005 International Union of Microbiological Societies
Bradyrhizobium canariense sp. nov., an acid-tolerant endosymbiont that nodulates endemic genistoid legumes (Papilionoideae: Genisteae) from the Canary Islands, along with Bradyrhizobium japonicum bv. genistearum, Bradyrhizobium genospecies alpha and Bradyrhizobium genospecies beta
Pablo Vinuesa1,2,
Milagros León-Barrios3,
Claudia Silva1,
Anne Willems4,
Adriana Jarabo-Lorenzo3,
Ricardo Pérez-Galdona3,
Dietrich Werner2 and
Esperanza Martínez-Romero1
1 Centro de Ciencias Genómicas, UNAM, Av. Universidad s/n, Col. Chamilpa, CP 62210, AP. 565-A, Cuernavaca, Morelos, Mexico
2 FB Biologie, FG für Zellbiologie und Angewandte Botanik, Philipps Universität Marburg, Karl von Frisch Str., D-35032 Marburg, Germany
3 Departamento de Microbiología, Facultad de Farmacia, Universidad de La Laguna, Avda Astrofísico Sánchez s/n, La Laguna, Spain
4 Laboratorium voor Microbiologie, Vakgroep Biochemie, Fysiologie en Microbiologie. Universiteit Gent K.L., Ledeganckstraat 35, B-9000 Gent, Belgium
Correspondence
Pablo Vinuesa
vinuesa{at}ccg.unam.mx
Highly diverse Bradyrhizobium strains nodulate genistoid legumes (brooms) in the Canary Islands, Morocco, Spain and the Americas. Phylogenetic analyses of ITS, atpD, glnII and recA sequences revealed that these isolates represent at least four distinct evolutionary lineages within the genus, namely Bradyrhizobium japonicum and three unnamed genospecies. DNADNA hybridization experiments confirmed that one of the latter represents a new taxonomic species for which the name Bradyrhizobium canariense is proposed. B. canariense populations experience homologous recombination at housekeeping loci, but are sexually isolated from sympatric B. japonicum bv. genistearum strains in soils of the Canary Islands. B. canariense strains are highly acid-tolerant, nodulate diverse legumes in the tribes Genisteae and Loteae, but not Glycine species, whereas acid-sensitive B. japonicum soybean isolates such as USDA 6T and USDA 110 do not nodulate genistoid legumes. Based on host-range experiments and phylogenetic analyses of symbiotic nifH and nodC sequences, the biovarieties genistearum and glycinearum for the genistoid legume and soybean isolates, respectively, were proposed. B. canariense bv. genistearum strains display an overlapped host range with B. japonicum bv. genistearum isolates, both sharing monophyletic nifH and nodC alleles, possibly due to the lateral transfer of a conjugative chromosomal symbiotic island across species. B. canariense is the sister species of B. japonicum, as inferred from a maximum-likelihood Bradyrhizobium species phylogeny estimated from congruent glnII+recA sequence partitions, which resolves eight species clades. In addition to the currently described species, this phylogeny uncovered the novel Bradyrhizobium genospecies alpha and beta and the photosynthetic strains as independent evolutionary lineages. The type strain for B. canariense is BTA-1T (=ATCC BAA-1002T=LMG 22265T=CFNE 1008T).
Abbreviations: ECGL, endemic Canarian genistoid legume; REP, repetitive extragenic palindromic sequence
Published online ahead of print on 24 September 2004 as DOI 10.1099/ijs.0.63292-0.
The GenBank/EMBL/DDBJ accession number for the rrs sequence of strain BC-C2 is AY577427; those for the ITS1 sequences are AY386703AY386705, AY386707, AY386708, AY386712AY386718, AY386721, AY386722, AY386734, AY599094 and AY599095.
Sequence accession numbers for new Bradyrhizobium sequences used and generated in this study, the figures discussed in the text and our final and concluding remarks are available as supplementary material in IJSEM Online.
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Copyright © 2005 by the International Union of Microbiological Societies.