International Journal of Systematic and Evolutionary Microbiology, Vol 51, 1663-1669, Copyright © 2001 by Society for General Microbiology

Methanoculleus chikugoensis sp. nov., a novel methanogenic archaeon isolated from paddy field soil in Japan, and DNA--DNA hybridization among Methanoculleus species

D Dianou, T Miyaki, S Asakawa, H Morii, K Nagaoka, H Oyaizu and S Matsumoto
Laboratory of Soil Microbiology, Kyushu National Agricultural Experiment Station, Nishigoshi, Kumamoto 861-1192, Japan

A strictly anaerobic, irregularly coccoid, methanogenic archaeon, strain MG62(T) (=JCM 10825(T)=DSM 13459(T)), was isolated from paddy field soil in Chikugo, Fukuoka, Japan. The cells stained Gram-negative, were 1.0--2.0 7microm in diameter, were lysed by SDS and hypotonic solutions and were flagellated. Motility was not observed. The strain was able to use H(2)/CO(2), 2-propanol/CO(2), formate, 2-butanol/CO(2) and cyclopentanol/CO(2) as substrates for methanogenesis, but did not utilize acetate, ethanol, methanol or methylamines. The optimum temperature and pH were 25--30 degrees C and 6.7--7.2. Analysis of lipid component parts (core lipids, phospholipid polar head groups and glycolipid sugar moieties) showed the characteristic pattern of members of the family Methanomicrobiaceae except for the absence of glucose as a glycolipid sugar moiety. The G+C content of the DNA was 62.2 mol%. Sequence analysis of the 16S rDNA revealed that the strain belonged to the genus Methanoculleus. The strain had DNA--DNA hybridization values of less than 50% with type strains of Methanoculleus species. On the basis of phenotypic, genotypic and phylogenetic characteristics, the name Methanoculleus chikugoensis sp. nov. is proposed for strain MG62(T) (=JCM 10825(T)=DSM 13459(T)). The DNA hybridization study also revealed the close relationships of three species, Methanoculleus olentangyi, Methanoculleus bourgensis and Methanoculleus oldenburgensis, among Methanoculleus species.

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