IJSEM
HOME HELP FEEDBACK SUBSCRIPTIONS ARCHIVE SEARCH TABLE OF CONTENTS
 QUICK SEARCH:   [advanced]


     


Int J Syst Bacteriol 49 (1999), 1615-1622; DOI 10.1099/00207713-49-4-1615
© 1999 Society for General Microbiology
This Article
Right arrow Full Text (PDF)
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Right arrow Citation Map
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Download to citation manager
Right arrow reprints & permissions
Citing Articles
Right arrow Citing Articles via HighWire
Right arrow Citing Articles via CrossRef
Right arrow Citing Articles via Google Scholar
Google Scholar
Right arrow Articles by Coates, J. D.
Right arrow Articles by Lovley, D. R.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Coates, J. D.
Right arrow Articles by Lovley, D. R.
Agricola
Right arrow Articles by Coates, J. D.
Right arrow Articles by Lovley, D. R.

Geothrix fermentans gen. nov., sp. nov., a novel Fe(III)-reducing bacterium from a hydrocarbon-contaminated aquifer

John D. Coates1, Debra J. Ellis2,{dagger}, Catherine V. Gaw2 and Derek R. Lovley2

1 Department of Microbiology, Southern Illinois University Carbondale, IL 62901, USA
2 Department of Microbiology, University of Massachusetts, Amherst, MA 01003, USA

Author for correspondence: John D. Coates. Tel: + 1 618 453 6132. Fax: +1 618 453 8036. e-mail: jcoates{at}micro.siu.edu

ABSTRACT

In an attempt to understand better the micro-organisms involved in anaerobic degradation of aromatic hydrocarbons in the Fe(III)-reducing zone of petroleum-contaminated aquifers, Fe(III)-reducing micro-organisms were isolated from contaminated aquifer material that had been adapted for rapid oxidation of toluene coupled to Fe(III) reduction. One of these organisms, strain H-5T, was enriched and isolated on acetate/Fe(III) medium. Strain H-5T is a Gram-negative strict anaerobe that grows with various simple organic acids such as acetate, propionate, lactate and fumarate as alternative electron donors with Fe(III) as the electron acceptor. In addition, strain H-5T also oxidizes long-chain fatty acids such as palmitate with Fe(III) as the sole electron acceptor. Strain H-5T can also grow by fermentation of citrate or fumarate in the absence of an alternative electron acceptor. The primary endproducts of citrate fermentation are acetate and succinate. In addition to various forms of soluble and insoluble Fe(III), strain H-5T grows with nitrate, Mn(IV), fumarate and the humic acid analogue 2,6-anthraquinone disulfonate as alternative electron acceptors. As with other organisms that can oxidize organic compounds completely with the reduction of Fe(III), cell suspensions of strain H-5T have absorbance maxima indicative of a C-type cytochrome(s). It is proposed that strain H-5T represents a novel genus in the Holophaga-Acidobacterium phylum and that it should be named Geothrix fermentans sp. nov., gen. nov.


Key Words: Fe(III) reduction • humic acid reduction • toluene degradation • AcidobacteriumHolophaga

{dagger} Present address: Department of Biology, University of Massachusetts, Dartmouth, MA, USA.

The GenBank accession number for the 16S rDNA sequence of Geothrix fermentans strain H-5T is U41563.




This article has been cited by other articles:


Home page
Int. J. Syst. Evol. Microbiol.Home page
I. S. Kulichevskaya, N. E. Suzina, W. Liesack, and S. N. Dedysh
Bryobacter aggregatus gen. nov., sp. nov., a peat-inhabiting, aerobic chemo-organotroph from subdivision 3 of the Acidobacteria
Int J Syst Evol Microbiol, February 1, 2010; 60(2): 301 - 306.
[Abstract] [Full Text] [PDF]


Home page
Int. J. Syst. Evol. Microbiol.Home page
A. C. Greene, B. K. C. Patel, and S. Yacob
Geoalkalibacter subterraneus sp. nov., an anaerobic Fe(III)- and Mn(IV)-reducing bacterium from a petroleum reservoir, and emended descriptions of the family Desulfuromonadaceae and the genus Geoalkalibacter
Int J Syst Evol Microbiol, April 1, 2009; 59(4): 781 - 785.
[Abstract] [Full Text] [PDF]


Home page
Appl. Environ. Microbiol.Home page
N. L. Ward, J. F. Challacombe, P. H. Janssen, B. Henrissat, P. M. Coutinho, M. Wu, G. Xie, D. H. Haft, M. Sait, J. Badger, et al.
Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils
Appl. Envir. Microbiol., April 1, 2009; 75(7): 2046 - 2056.
[Abstract] [Full Text] [PDF]


Home page
Int. J. Syst. Evol. Microbiol.Home page
Y. Fukunaga, M. Kurahashi, K. Yanagi, A. Yokota, and S. Harayama
Acanthopleuribacter pedis gen. nov., sp. nov., a marine bacterium isolated from a chiton, and description of Acanthopleuribacteraceae fam. nov., Acanthopleuribacterales ord. nov., Holophagaceae fam. nov., Holophagales ord. nov. and Holophagae classis nov. in the phylum 'Acidobacteria'
Int J Syst Evol Microbiol, November 1, 2008; 58(11): 2597 - 2601.
[Abstract] [Full Text] [PDF]


Home page
Appl. Environ. Microbiol.Home page
J. R. Hall, K. R. Mitchell, O. Jackson-Weaver, A. S. Kooser, B. R. Cron, L. J. Crossey, and C. D. Takacs-Vesbach
Molecular Characterization of the Diversity and Distribution of a Thermal Spring Microbial Community by Using rRNA and Metabolic Genes
Appl. Envir. Microbiol., August 1, 2008; 74(15): 4910 - 4922.
[Abstract] [Full Text] [PDF]


Home page
Appl. Environ. Microbiol.Home page
S. A. Haveman, R. J. DiDonato Jr., L. Villanueva, E. S. Shelobolina, B. L. Postier, B. Xu, A. Liu, and D. R. Lovley
Genome-Wide Gene Expression Patterns and Growth Requirements Suggest that Pelobacter carbinolicus Reduces Fe(III) Indirectly via Sulfide Production
Appl. Envir. Microbiol., July 15, 2008; 74(14): 4277 - 4284.
[Abstract] [Full Text] [PDF]


Home page
Appl. Environ. Microbiol.Home page
E. Cardenas, W.-M. Wu, M. B. Leigh, J. Carley, S. Carroll, T. Gentry, J. Luo, D. Watson, B. Gu, M. Ginder-Vogel, et al.
Microbial Communities in Contaminated Sediments, Associated with Bioremediation of Uranium to Submicromolar Levels
Appl. Envir. Microbiol., June 15, 2008; 74(12): 3718 - 3729.
[Abstract] [Full Text] [PDF]


Home page
Int. J. Syst. Evol. Microbiol.Home page
I. H. Koch, F. Gich, P. F. Dunfield, and J. Overmann
Edaphobacter modestus gen. nov., sp. nov., and Edaphobacter aggregans sp. nov., acidobacteria isolated from alpine and forest soils
Int J Syst Evol Microbiol, May 1, 2008; 58(5): 1114 - 1122.
[Abstract] [Full Text] [PDF]


Home page
Appl. Environ. Microbiol.Home page
C. M. Hansel, S. Fendorf, P. M. Jardine, and C. A. Francis
Changes in Bacterial and Archaeal Community Structure and Functional Diversity along a Geochemically Variable Soil Profile
Appl. Envir. Microbiol., March 1, 2008; 74(5): 1620 - 1633.
[Abstract] [Full Text] [PDF]


Home page
Appl. Environ. Microbiol.Home page
M. Blothe, D. M. Akob, J. E. Kostka, K. Goschel, H. L. Drake, and K. Kusel
pH Gradient-Induced Heterogeneity of Fe(III)-Reducing Microorganisms in Coal Mining-Associated Lake Sediments
Appl. Envir. Microbiol., February 15, 2008; 74(4): 1019 - 1029.
[Abstract] [Full Text] [PDF]


Home page
Eur J MineralHome page
V. S. Coker, C. I. Pearce, C. Lang, G. van der Laan, R. A. D. Pattrick, N. D. Telling, D. Schuler, E. Arenholz, and J. R. Lloyd
Cation site occupancy of biogenic magnetite compared to polygenic ferrite spinels determined by X-ray magnetic circular dichroism
European Journal of Mineralogy, October 1, 2007; 19(5): 707 - 716.
[Abstract] [Full Text] [PDF]


Home page
Appl. Environ. Microbiol.Home page
S. A. Eichorst, J. A. Breznak, and T. M. Schmidt
Isolation and Characterization of Soil Bacteria That Define Terriglobus gen. nov., in the Phylum Acidobacteria
Appl. Envir. Microbiol., April 15, 2007; 73(8): 2708 - 2717.
[Abstract] [Full Text] [PDF]


Home page
Appl. Environ. Microbiol.Home page
P. H. Janssen
Identifying the Dominant Soil Bacterial Taxa in Libraries of 16S rRNA and 16S rRNA Genes
Appl. Envir. Microbiol., March 1, 2006; 72(3): 1719 - 1728.
[Full Text] [PDF]


Home page
Appl. Environ. Microbiol.Home page
S. N. Dedysh, T. A. Pankratov, S. E. Belova, I. S. Kulichevskaya, and W. Liesack
Phylogenetic Analysis and In Situ Identification of Bacteria Community Composition in an Acidic Sphagnum Peat Bog
Appl. Envir. Microbiol., March 1, 2006; 72(3): 2110 - 2117.
[Abstract] [Full Text] [PDF]


Home page
Mineral MagHome page
F. S. Islam, C. Boothman, A. G. Gault, D. A. Polya, and J. R. Lloyd
Potential role of the Fe(III)-reducing bacteria Geobacter and Geothrix in controlling arsenic solubility in Bengal delta sediments
Mineralogical Magazine, October 1, 2005; 69(5): 865 - 875.
[Abstract] [Full Text] [PDF]


Home page
Appl. Environ. Microbiol.Home page
D. P. Lies, M. E. Hernandez, A. Kappler, R. E. Mielke, J. A. Gralnick, and D. K. Newman
Shewanella oneidensis MR-1 Uses Overlapping Pathways for Iron Reduction at a Distance and by Direct Contact under Conditions Relevant for Biofilms
Appl. Envir. Microbiol., August 1, 2005; 71(8): 4414 - 4426.
[Abstract] [Full Text] [PDF]


Home page
Appl. Environ. Microbiol.Home page
J. D. Coates, K. A. Cole, U. Michaelidou, J. Patrick, M. J. McInerney, and L. A. Achenbach
Biological Control of Hog Waste Odor through Stimulated Microbial Fe(III) Reduction
Appl. Envir. Microbiol., August 1, 2005; 71(8): 4728 - 4735.
[Abstract] [Full Text] [PDF]


Home page
Appl. Environ. Microbiol.Home page
D. R. Bond and D. R. Lovley
Evidence for Involvement of an Electron Shuttle in Electricity Generation by Geothrix fermentans
Appl. Envir. Microbiol., April 1, 2005; 71(4): 2186 - 2189.
[Abstract] [Full Text] [PDF]


Home page
Int. J. Syst. Evol. Microbiol.Home page
K. T. Finneran, C. V. Johnsen, and D. R. Lovley
Rhodoferax ferrireducens sp. nov., a psychrotolerant, facultatively anaerobic bacterium that oxidizes acetate with the reduction of Fe(III)
Int J Syst Evol Microbiol, May 1, 2003; 53(3): 669 - 673.
[Abstract] [Full Text] [PDF]


Home page
Appl. Environ. Microbiol.Home page
K. Kashefi, D. E. Holmes, J. A. Baross, and D. R. Lovley
Thermophily in the Geobacteraceae: Geothermobacter ehrlichii gen. nov., sp. nov., a Novel Thermophilic Member of the Geobacteraceae from the "Bag City" Hydrothermal Vent
Appl. Envir. Microbiol., May 1, 2003; 69(5): 2985 - 2993.
[Abstract] [Full Text] [PDF]


Home page
Appl. Environ. Microbiol.Home page
K. P. Nevin and D. R. Lovley
Mechanisms for Accessing Insoluble Fe(III) Oxide during Dissimilatory Fe(III) Reduction by Geothrix fermentans
Appl. Envir. Microbiol., May 1, 2002; 68(5): 2294 - 2299.
[Abstract] [Full Text] [PDF]


Home page
Appl. Environ. Microbiol.Home page
P. H. Janssen, P. S. Yates, B. E. Grinton, P. M. Taylor, and M. Sait
Improved Culturability of Soil Bacteria and Isolation in Pure Culture of Novel Members of the Divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia
Appl. Envir. Microbiol., May 1, 2002; 68(5): 2391 - 2396.
[Abstract] [Full Text] [PDF]


Home page
Appl. Environ. Microbiol.Home page
R. M. M. Abed, N. M. D. Safi, J. Koster, D. de Beer, Y. El-Nahhal, J. Rullkotter, and F. Garcia-Pichel
Microbial Diversity of a Heavily Polluted Microbial Mat and Its Community Changes following Degradation of Petroleum Compounds
Appl. Envir. Microbiol., April 1, 2002; 68(4): 1674 - 1683.
[Abstract] [Full Text] [PDF]


Home page
Appl. Environ. Microbiol.Home page
W. F. M. Roling, B. M. van Breukelen, M. Braster, B. Lin, and H. W. van Verseveld
Relationships between Microbial Community Structure and Hydrochemistry in a Landfill Leachate-Polluted Aquifer
Appl. Envir. Microbiol., October 1, 2001; 67(10): 4619 - 4629.
[Abstract] [Full Text] [PDF]


Home page
Appl. Environ. Microbiol.Home page
K. P. Nevin and D. R. Lovley
Lack of Production of Electron-Shuttling Compounds or Solubilization of Fe(III) during Reduction of Insoluble Fe(III) Oxide by Geobacter metallireducens
Appl. Envir. Microbiol., May 1, 2000; 66(5): 2248 - 2251.
[Abstract] [Full Text] [PDF]




HOME HELP FEEDBACK SUBSCRIPTIONS ARCHIVE SEARCH TABLE OF CONTENTS
INT J SYST EVOL MICROBIOL MICROBIOLOGY J GEN VIROL
J MED MICROBIOL ALL SGM JOURNALS
Copyright © 1999 by the International Union of Microbiological Societies.