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Proposal for a New Hierarchic Classification System, Actinobacteria classis nov.

DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, 38124 Braunschweig, Germany

^* Corresponding author. Mailing address: DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Mascheroder Weg lb, 38124 Soanschweig, Germany. Phone: 49 531 2616 352. Fax: 49 531 2616 418. E-mail: erko{at}gbf-braunschweig.de.

ABSTRACT

A new hierarchic classification structure for the taxa between the taxonomic levels of genus and class is Proposed for the actinomycete line of descent as defined by analysis of small subunit (16S) rRNA and genes coding for this molecule (rDNA). While the traditional circumscription of a genus of the actinomycete subphylum is by and large in accord with the 16S rRNA/rDNA-based phylogenetic clustering of these organisms. most of the higher taxa proposed in the past do not take into account the phylogenetic clustering of genera. The rich chemical, morphological and physiological diversity of phylogenetically closely related genera makes the description of families and higher taxa so broad that they become meaningless for the description of the enclosed taxa. Here we present a classification system in which phylogenetically neighboring taxa at the genus level are clustered into families, suborders, orders, subclasses, and a class irrespective of those phenotypec characteristics on which the delineation of taxa has been based in the past. Rather than being based on a listing of a wide array of chemotaxonomic, morphological, and physiological properties, the delineation is based solely on 16S rDNA/rRNA sequence-based phylogenetic clustering and the presence of taxon-specific 16S rDNA RNA signature nucleotides.

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				S. N. Lindner, D. Vidaurre, S. Willbold, S. M. Schoberth, and V. F. Wendisch NCgl2620 Encodes a Class II Polyphosphate Kinase in Corynebacterium glutamicum Appl. Envir. Microbiol., August 1, 2007; 73(15): 5026 - 5033. [Abstract] [Full Text] [PDF]

				S. D. Lee Marmoricola aequoreus sp. nov., a novel actinobacterium isolated from marine sediment Int J Syst Evol Microbiol, July 1, 2007; 57(7): 1391 - 1395. [Abstract] [Full Text] [PDF]

				G. Huys, M. Vancanneyt, K. D'Haene, E. Falsen, G. Wauters, and P. Vandamme Alloscardovia omnicolens gen. nov., sp. nov., from human clinical samples Int J Syst Evol Microbiol, July 1, 2007; 57(7): 1442 - 1446. [Abstract] [Full Text] [PDF]

				Y. Hoshino, K. Watanabe, S. Iida, S.-i. Suzuki, T. Kudo, T. Kogure, K. Yazawa, J. Ishikawa, R. M. Kroppenstedt, and Y. Mikami Nocardia terpenica sp. nov., isolated from Japanese patients with nocardiosis Int J Syst Evol Microbiol, July 1, 2007; 57(7): 1456 - 1460. [Abstract] [Full Text] [PDF]

				V. Rodriguez-Nava, Z. U. Khan, G. Potter, R. M. Kroppenstedt, P. Boiron, and F. Laurent Nocardia coubleae sp. nov., isolated from oil-contaminated Kuwaiti soil Int J Syst Evol Microbiol, July 1, 2007; 57(7): 1482 - 1486. [Abstract] [Full Text] [PDF]

				H. Yamamura, T. Tamura, Y. Sakiyama, and S. Harayama Nocardia amamiensis sp. nov., isolated from a sugar-cane field in Japan Int J Syst Evol Microbiol, July 1, 2007; 57(7): 1599 - 1602. [Abstract] [Full Text] [PDF]

				M. R. Carlsohn, I. Groth, G. Y. A. Tan, B. Schutze, H.-P. Saluz, T. Munder, J. Yang, J. Wink, and M. Goodfellow Amycolatopsis saalfeldensis sp. nov., a novel actinomycete isolated from a medieval alum slate mine Int J Syst Evol Microbiol, July 1, 2007; 57(7): 1640 - 1646. [Abstract] [Full Text] [PDF]

				J. P. Euzeby Proposal to modify Rule 8 of the Bacteriological Code (1990 Revision) Int J Syst Evol Microbiol, July 1, 2007; 57(7): 1672 - 1672. [Abstract] [Full Text] [PDF]

				G. M. Seibold and B. J. Eikmanns The glgX gene product of Corynebacterium glutamicum is required for glycogen degradation and for fast adaptation to hyperosmotic stress Microbiology, July 1, 2007; 153(7): 2212 - 2220. [Abstract] [Full Text] [PDF]

				L. Zhang, Z. Xu, and B. K. C. Patel Frondicola australicus gen. nov., sp. nov., isolated from decaying leaf litter from a pine forest Int J Syst Evol Microbiol, June 1, 2007; 57(6): 1177 - 1182. [Abstract] [Full Text] [PDF]

				M.-S. Kang, W.-T. Im, H.-M. Jung, M. K. Kim, M. Goodfellow, K. K. Kim, H.-C. Yang, D.-S. An, and S.-T. Lee Cellulomonas composti sp. nov., a cellulolytic bacterium isolated from cattle farm compost Int J Syst Evol Microbiol, June 1, 2007; 57(6): 1256 - 1260. [Abstract] [Full Text] [PDF]

				J. J. Walker and N. R. Pace Phylogenetic Composition of Rocky Mountain Endolithic Microbial Ecosystems Appl. Envir. Microbiol., June 1, 2007; 73(11): 3497 - 3504. [Abstract] [Full Text] [PDF]

				Y.-Q. Zhang, P. Schumann, L.-Y. Yu, H.-Y. Liu, Y.-Q. Zhang, L.-H. Xu, E. Stackebrandt, C.-L. Jiang, and W.-J. Li Zhihengliuella halotolerans gen. nov., sp. nov., a novel member of the family Micrococcaceae Int J Syst Evol Microbiol, May 1, 2007; 57(5): 1018 - 1023. [Abstract] [Full Text] [PDF]

				A. F. Yassin, F.-T. Shen, H. Hupfer, A. B. Arun, W.-A. Lai, P. D. Rekha, and C. C. Young Gordonia malaquae sp. nov., isolated from sludge of a wastewater treatment plant Int J Syst Evol Microbiol, May 1, 2007; 57(5): 1065 - 1068. [Abstract] [Full Text] [PDF]

				P. Kampfer, B. Huber, K. Thummes, I. Grun-Wollny, and H.-J. Busse Actinoplanes couchii sp. nov. Int J Syst Evol Microbiol, April 1, 2007; 57(4): 721 - 724. [Abstract] [Full Text] [PDF]

				A. M. Maszenan, H. L. Jiang, J.-H. Tay, P. Schumann, R. M. Kroppenstedt, and S. T.-L. Tay Granulicoccus phenolivorans gen. nov., sp. nov., a Gram-positive, phenol-degrading coccus isolated from phenol-degrading aerobic granules Int J Syst Evol Microbiol, April 1, 2007; 57(4): 730 - 737. [Abstract] [Full Text] [PDF]

				Q. Gu, M. Pasciak, H. Luo, A. Gamian, Z. Liu, and Y. Huang Ruania albidiflava gen. nov., sp. nov., a novel member of the suborder Micrococcineae Int J Syst Evol Microbiol, April 1, 2007; 57(4): 809 - 814. [Abstract] [Full Text] [PDF]

				J. Zhang, Q. Xie, Z. Liu, and M. Goodfellow Lechevalieria fradiae sp. nov., a novel actinomycete isolated from soil in China Int J Syst Evol Microbiol, April 1, 2007; 57(4): 832 - 836. [Abstract] [Full Text] [PDF]

				H. Yukawa, C. A. Omumasaba, H. Nonaka, P. Kos, N. Okai, N. Suzuki, M. Suda, Y. Tsuge, J. Watanabe, Y. Ikeda, et al. Comparative analysis of the Corynebacterium glutamicum group and complete genome sequence of strain R Microbiology, April 1, 2007; 153(4): 1042 - 1058. [Abstract] [Full Text] [PDF]

				A. F. Yassin, C. C. Young, W.-A. Lai, H. Hupfer, A. B. Arun, F.-T. Shen, P. D. Rekha, and M.-J. Ho Williamsia serinedens sp. nov., isolated from an oil-contaminated soil Int J Syst Evol Microbiol, March 1, 2007; 57(3): 558 - 561. [Abstract] [Full Text] [PDF]

				H. Luo, Q. Gu, J. Xie, C. Hu, Z. Liu, and Y. Huang Gordonia shandongensis sp. nov., isolated from soil in China Int J Syst Evol Microbiol, March 1, 2007; 57(3): 605 - 608. [Abstract] [Full Text] [PDF]

				M. T. Chaudhry, Y. Huang, X.-H. Shen, A. Poetsch, C.-Y. Jiang, and S.-J. Liu Genome-wide investigation of aromatic acid transporters in Corynebacterium glutamicum Microbiology, March 1, 2007; 153(3): 857 - 865. [Abstract] [Full Text] [PDF]

				R. V. V. Tatituri, P. A. Illarionov, L. G. Dover, J. Nigou, M. Gilleron, P. Hitchen, K. Krumbach, H. R. Morris, N. Spencer, A. Dell, et al. Inactivation of Corynebacterium glutamicum NCgl0452 and the Role of MgtA in the Biosynthesis of a Novel Mannosylated Glycolipid Involved in Lipomannan Biosynthesis J. Biol. Chem., February 16, 2007; 282(7): 4561 - 4572. [Abstract] [Full Text] [PDF]

				K. Adachi, A. Katsuta, S. Matsuda, X. Peng, N. Misawa, Y. Shizuri, R. M. Kroppenstedt, A. Yokota, and H. Kasai Smaragdicoccus niigatensis gen. nov., sp. nov., a novel member of the suborder Corynebacterineae Int J Syst Evol Microbiol, February 1, 2007; 57(2): 297 - 301. [Abstract] [Full Text] [PDF]

				S. D. Lee and S. J. Kim Aeromicrobium tamlense sp. nov., isolated from dried seaweed Int J Syst Evol Microbiol, February 1, 2007; 57(2): 337 - 341. [Abstract] [Full Text] [PDF]