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Int J Syst Bacteriol 47 (1997), 479-491; DOI 10.1099/00207713-47-2-479
© 1997 Society for General Microbiology
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Proposal for a New Hierarchic Classification System, Actinobacteria classis nov.

ERKO STACKEBRANDT*, FRED A. RAINEY and NAOMI L. WARD-RAINEY

DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, 38124 Braunschweig, Germany

* Corresponding author. Mailing address: DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Mascheroder Weg lb, 38124 Soanschweig, Germany. Phone: 49 531 2616 352. Fax: 49 531 2616 418. E-mail: erko{at}gbf-braunschweig.de.

ABSTRACT

A new hierarchic classification structure for the taxa between the taxonomic levels of genus and class is Proposed for the actinomycete line of descent as defined by analysis of small subunit (16S) rRNA and genes coding for this molecule (rDNA). While the traditional circumscription of a genus of the actinomycete subphylum is by and large in accord with the 16S rRNA/rDNA-based phylogenetic clustering of these organisms. most of the higher taxa proposed in the past do not take into account the phylogenetic clustering of genera. The rich chemical, morphological and physiological diversity of phylogenetically closely related genera makes the description of families and higher taxa so broad that they become meaningless for the description of the enclosed taxa. Here we present a classification system in which phylogenetically neighboring taxa at the genus level are clustered into families, suborders, orders, subclasses, and a class irrespective of those phenotypec characteristics on which the delineation of taxa has been based in the past. Rather than being based on a listing of a wide array of chemotaxonomic, morphological, and physiological properties, the delineation is based solely on 16S rDNA/rRNA sequence-based phylogenetic clustering and the presence of taxon-specific 16S rDNA RNA signature nucleotides.




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Streptomyces griseus 45H, a producer of the extracellular autoregulator protein factor C, is a member of the species Streptomyces albidoflavus
Int J Syst Evol Microbiol, April 1, 2008; 58(4): 1029 - 1031.
[Abstract] [Full Text] [PDF]


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Int. J. Syst. Evol. Microbiol.Home page
Y. Jiang, J. Wiese, S.-K. Tang, L.-H. Xu, J. F. Imhoff, and C.-L. Jiang
Actinomycetospora chiangmaiensis gen. nov., sp. nov., a new member of the family Pseudonocardiaceae
Int J Syst Evol Microbiol, February 1, 2008; 58(2): 408 - 413.
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Int. J. Syst. Evol. Microbiol.Home page
S. D. Lee
Brevibacterium marinum sp. nov., isolated from seawater
Int J Syst Evol Microbiol, February 1, 2008; 58(2): 500 - 504.
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Int. J. Syst. Evol. Microbiol.Home page
A. L. Jones, R. J. Koerner, S. Natarajan, J. D. Perry, and M. Goodfellow
Dietzia papillomatosis sp. nov., a novel actinomycete isolated from the skin of an immunocompetent patient with confluent and reticulated papillomatosis
Int J Syst Evol Microbiol, January 1, 2008; 58(1): 68 - 72.
[Abstract] [Full Text] [PDF]


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Int. J. Syst. Evol. Microbiol.Home page
Y.-J. Chou, J.-H. Chou, K.-Y. Lin, M.-C. Lin, Y.-H. Wei, A. B. Arun, C.-C. Young, and W.-M. Chen
Rothia terrae sp. nov. isolated from soil in Taiwan
Int J Syst Evol Microbiol, January 1, 2008; 58(1): 84 - 88.
[Abstract] [Full Text] [PDF]


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Int. J. Syst. Evol. Microbiol.Home page
X.-Y. Liu, B.-J. Wang, C.-Y. Jiang, and S.-J. Liu
Ornithinimicrobium pekingense sp. nov., isolated from activated sludge
Int J Syst Evol Microbiol, January 1, 2008; 58(1): 116 - 119.
[Abstract] [Full Text] [PDF]


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Int. J. Syst. Evol. Microbiol.Home page
S. D. Lee and D. W. Lee
Lapillicoccus jejuensis gen. nov., sp. nov., a novel actinobacterium of the family Intrasporangiaceae, isolated from stone
Int J Syst Evol Microbiol, December 1, 2007; 57(12): 2794 - 2798.
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Int. J. Syst. Evol. Microbiol.Home page
M. E. Trujillo, R. M. Kroppenstedt, C. Fernandez-Molinero, P. Schumann, and E. Martinez-Molina
Micromonospora lupini sp. nov. and Micromonospora saelicesensis sp. nov., isolated from root nodules of Lupinus angustifolius
Int J Syst Evol Microbiol, December 1, 2007; 57(12): 2799 - 2804.
[Abstract] [Full Text] [PDF]


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Int. J. Syst. Evol. Microbiol.Home page
W. Wang, Z. Zhang, Q. Tang, J. Mao, D. Wei, Y. Huang, Z. Liu, Y. Shi, and M. Goodfellow
Lechevalieria xinjiangensis sp. nov., a novel actinomycete isolated from radiation-polluted soil in China
Int J Syst Evol Microbiol, December 1, 2007; 57(12): 2819 - 2822.
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Int. J. Syst. Evol. Microbiol.Home page
J. P. Seo, Y.-W. Yun, and S. D. Lee
Nocardia speluncae sp. nov., isolated from a cave
Int J Syst Evol Microbiol, December 1, 2007; 57(12): 2932 - 2935.
[Abstract] [Full Text] [PDF]


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Int. J. Syst. Evol. Microbiol.Home page
S. D. Lee
Labedella gwakjiensis gen. nov., sp. nov., a novel actinomycete of the family Microbacteriaceae
Int J Syst Evol Microbiol, November 1, 2007; 57(11): 2498 - 2502.
[Abstract] [Full Text] [PDF]


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Int. J. Syst. Evol. Microbiol.Home page
Y. Jiang, S.-K. Tang, J. Wiese, L.-H. Xu, J. F. Imhoff, and C.-L. Jiang
Streptomyces hainanensis sp. nov., a novel member of the genus Streptomyces
Int J Syst Evol Microbiol, November 1, 2007; 57(11): 2694 - 2698.
[Abstract] [Full Text] [PDF]


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Int. J. Syst. Evol. Microbiol.Home page
M. R. Carlsohn, I. Groth, C. Sproer, B. Schutze, H.-P. Saluz, T. Munder, and E. Stackebrandt
Kribbella aluminosa sp. nov., isolated from a medieval alum slate mine
Int J Syst Evol Microbiol, September 1, 2007; 57(9): 1943 - 1947.
[Abstract] [Full Text] [PDF]


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Int. J. Syst. Evol. Microbiol.Home page
Q. Gu, W. Zheng, and Y. Huang
Glycomyces sambucus sp. nov., an endophytic actinomycete isolated from the stem of Sambucus adnata Wall
Int J Syst Evol Microbiol, September 1, 2007; 57(9): 1995 - 1998.
[Abstract] [Full Text] [PDF]


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Int. J. Syst. Evol. Microbiol.Home page
M. Savic, I. Bratic, and B. Vasiljevic
Streptomyces durmitorensis sp. nov., a producer of an FK506-like immunosuppressant
Int J Syst Evol Microbiol, September 1, 2007; 57(9): 2119 - 2124.
[Abstract] [Full Text] [PDF]


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MicrobiologyHome page
R. V. V. Tatituri, L. J. Alderwick, A. K. Mishra, J. Nigou, M. Gilleron, K. Krumbach, P. Hitchen, A. Giordano, H. R. Morris, A. Dell, et al.
Structural characterization of a partially arabinosylated lipoarabinomannan variant isolated from a Corynebacterium glutamicum ubiA mutant
Microbiology, August 1, 2007; 153(8): 2621 - 2629.
[Abstract] [Full Text] [PDF]


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Appl. Environ. Microbiol.Home page
S. N. Lindner, D. Vidaurre, S. Willbold, S. M. Schoberth, and V. F. Wendisch
NCgl2620 Encodes a Class II Polyphosphate Kinase in Corynebacterium glutamicum
Appl. Envir. Microbiol., August 1, 2007; 73(15): 5026 - 5033.
[Abstract] [Full Text] [PDF]


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Int. J. Syst. Evol. Microbiol.Home page
S. D. Lee
Marmoricola aequoreus sp. nov., a novel actinobacterium isolated from marine sediment
Int J Syst Evol Microbiol, July 1, 2007; 57(7): 1391 - 1395.
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Int. J. Syst. Evol. Microbiol.Home page
G. Huys, M. Vancanneyt, K. D'Haene, E. Falsen, G. Wauters, and P. Vandamme
Alloscardovia omnicolens gen. nov., sp. nov., from human clinical samples
Int J Syst Evol Microbiol, July 1, 2007; 57(7): 1442 - 1446.
[Abstract] [Full Text] [PDF]


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Int. J. Syst. Evol. Microbiol.Home page
Y. Hoshino, K. Watanabe, S. Iida, S.-i. Suzuki, T. Kudo, T. Kogure, K. Yazawa, J. Ishikawa, R. M. Kroppenstedt, and Y. Mikami
Nocardia terpenica sp. nov., isolated from Japanese patients with nocardiosis
Int J Syst Evol Microbiol, July 1, 2007; 57(7): 1456 - 1460.
[Abstract] [Full Text] [PDF]


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Int. J. Syst. Evol. Microbiol.Home page
V. Rodriguez-Nava, Z. U. Khan, G. Potter, R. M. Kroppenstedt, P. Boiron, and F. Laurent
Nocardia coubleae sp. nov., isolated from oil-contaminated Kuwaiti soil
Int J Syst Evol Microbiol, July 1, 2007; 57(7): 1482 - 1486.
[Abstract] [Full Text] [PDF]


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Int. J. Syst. Evol. Microbiol.Home page
H. Yamamura, T. Tamura, Y. Sakiyama, and S. Harayama
Nocardia amamiensis sp. nov., isolated from a sugar-cane field in Japan
Int J Syst Evol Microbiol, July 1, 2007; 57(7): 1599 - 1602.
[Abstract] [Full Text] [PDF]


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Int. J. Syst. Evol. Microbiol.Home page
M. R. Carlsohn, I. Groth, G. Y. A. Tan, B. Schutze, H.-P. Saluz, T. Munder, J. Yang, J. Wink, and M. Goodfellow
Amycolatopsis saalfeldensis sp. nov., a novel actinomycete isolated from a medieval alum slate mine
Int J Syst Evol Microbiol, July 1, 2007; 57(7): 1640 - 1646.
[Abstract] [Full Text] [PDF]


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Int. J. Syst. Evol. Microbiol.Home page
J. P. Euzeby
Proposal to modify Rule 8 of the Bacteriological Code (1990 Revision)
Int J Syst Evol Microbiol, July 1, 2007; 57(7): 1672 - 1672.
[Abstract] [Full Text] [PDF]


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MicrobiologyHome page
G. M. Seibold and B. J. Eikmanns
The glgX gene product of Corynebacterium glutamicum is required for glycogen degradation and for fast adaptation to hyperosmotic stress
Microbiology, July 1, 2007; 153(7): 2212 - 2220.
[Abstract] [Full Text] [PDF]


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Int. J. Syst. Evol. Microbiol.Home page
L. Zhang, Z. Xu, and B. K. C. Patel
Frondicola australicus gen. nov., sp. nov., isolated from decaying leaf litter from a pine forest
Int J Syst Evol Microbiol, June 1, 2007; 57(6): 1177 - 1182.
[Abstract] [Full Text] [PDF]


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Int. J. Syst. Evol. Microbiol.Home page
M.-S. Kang, W.-T. Im, H.-M. Jung, M. K. Kim, M. Goodfellow, K. K. Kim, H.-C. Yang, D.-S. An, and S.-T. Lee
Cellulomonas composti sp. nov., a cellulolytic bacterium isolated from cattle farm compost
Int J Syst Evol Microbiol, June 1, 2007; 57(6): 1256 - 1260.
[Abstract] [Full Text] [PDF]


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Appl. Environ. Microbiol.Home page
J. J. Walker and N. R. Pace
Phylogenetic Composition of Rocky Mountain Endolithic Microbial Ecosystems
Appl. Envir. Microbiol., June 1, 2007; 73(11): 3497 - 3504.
[Abstract] [Full Text] [PDF]


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Int. J. Syst. Evol. Microbiol.Home page
Y.-Q. Zhang, P. Schumann, L.-Y. Yu, H.-Y. Liu, Y.-Q. Zhang, L.-H. Xu, E. Stackebrandt, C.-L. Jiang, and W.-J. Li
Zhihengliuella halotolerans gen. nov., sp. nov., a novel member of the family Micrococcaceae
Int J Syst Evol Microbiol, May 1, 2007; 57(5): 1018 - 1023.
[Abstract] [Full Text] [PDF]


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Int. J. Syst. Evol. Microbiol.Home page
A. F. Yassin, F.-T. Shen, H. Hupfer, A. B. Arun, W.-A. Lai, P. D. Rekha, and C. C. Young
Gordonia malaquae sp. nov., isolated from sludge of a wastewater treatment plant
Int J Syst Evol Microbiol, May 1, 2007; 57(5): 1065 - 1068.
[Abstract] [Full Text] [PDF]


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Int. J. Syst. Evol. Microbiol.Home page
P. Kampfer, B. Huber, K. Thummes, I. Grun-Wollny, and H.-J. Busse
Actinoplanes couchii sp. nov.
Int J Syst Evol Microbiol, April 1, 2007; 57(4): 721 - 724.
[Abstract] [Full Text] [PDF]


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Int. J. Syst. Evol. Microbiol.Home page
A. M. Maszenan, H. L. Jiang, J.-H. Tay, P. Schumann, R. M. Kroppenstedt, and S. T.-L. Tay
Granulicoccus phenolivorans gen. nov., sp. nov., a Gram-positive, phenol-degrading coccus isolated from phenol-degrading aerobic granules
Int J Syst Evol Microbiol, April 1, 2007; 57(4): 730 - 737.
[Abstract] [Full Text] [PDF]


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Int. J. Syst. Evol. Microbiol.Home page
Q. Gu, M. Pasciak, H. Luo, A. Gamian, Z. Liu, and Y. Huang
Ruania albidiflava gen. nov., sp. nov., a novel member of the suborder Micrococcineae
Int J Syst Evol Microbiol, April 1, 2007; 57(4): 809 - 814.
[Abstract] [Full Text] [PDF]


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Int. J. Syst. Evol. Microbiol.Home page
J. Zhang, Q. Xie, Z. Liu, and M. Goodfellow
Lechevalieria fradiae sp. nov., a novel actinomycete isolated from soil in China
Int J Syst Evol Microbiol, April 1, 2007; 57(4): 832 - 836.
[Abstract] [Full Text] [PDF]


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MicrobiologyHome page
H. Yukawa, C. A. Omumasaba, H. Nonaka, P. Kos, N. Okai, N. Suzuki, M. Suda, Y. Tsuge, J. Watanabe, Y. Ikeda, et al.
Comparative analysis of the Corynebacterium glutamicum group and complete genome sequence of strain R
Microbiology, April 1, 2007; 153(4): 1042 - 1058.
[Abstract] [Full Text] [PDF]


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Int. J. Syst. Evol. Microbiol.Home page
A. F. Yassin, C. C. Young, W.-A. Lai, H. Hupfer, A. B. Arun, F.-T. Shen, P. D. Rekha, and M.-J. Ho
Williamsia serinedens sp. nov., isolated from an oil-contaminated soil
Int J Syst Evol Microbiol, March 1, 2007; 57(3): 558 - 561.
[Abstract] [Full Text] [PDF]


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Int. J. Syst. Evol. Microbiol.Home page
H. Luo, Q. Gu, J. Xie, C. Hu, Z. Liu, and Y. Huang
Gordonia shandongensis sp. nov., isolated from soil in China
Int J Syst Evol Microbiol, March 1, 2007; 57(3): 605 - 608.
[Abstract] [Full Text] [PDF]


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MicrobiologyHome page
M. T. Chaudhry, Y. Huang, X.-H. Shen, A. Poetsch, C.-Y. Jiang, and S.-J. Liu
Genome-wide investigation of aromatic acid transporters in Corynebacterium glutamicum
Microbiology, March 1, 2007; 153(3): 857 - 865.
[Abstract] [Full Text] [PDF]


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J. Biol. Chem.Home page
R. V. V. Tatituri, P. A. Illarionov, L. G. Dover, J. Nigou, M. Gilleron, P. Hitchen, K. Krumbach, H. R. Morris, N. Spencer, A. Dell, et al.
Inactivation of Corynebacterium glutamicum NCgl0452 and the Role of MgtA in the Biosynthesis of a Novel Mannosylated Glycolipid Involved in Lipomannan Biosynthesis
J. Biol. Chem., February 16, 2007; 282(7): 4561 - 4572.
[Abstract] [Full Text] [PDF]


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Int. J. Syst. Evol. Microbiol.Home page
K. Adachi, A. Katsuta, S. Matsuda, X. Peng, N. Misawa, Y. Shizuri, R. M. Kroppenstedt, A. Yokota, and H. Kasai
Smaragdicoccus niigatensis gen. nov., sp. nov., a novel member of the suborder Corynebacterineae
Int J Syst Evol Microbiol, February 1, 2007; 57(2): 297 - 301.
[Abstract] [Full Text] [PDF]


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Int. J. Syst. Evol. Microbiol.Home page
S. D. Lee and S. J. Kim
Aeromicrobium tamlense sp. nov., isolated from dried seaweed
Int J Syst Evol Microbiol, February 1, 2007; 57(2): 337 - 341.
[Abstract] [Full Text] [PDF]




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